Wall clock time and date at job start Tue Mar 31 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48498 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47224 * 300.00004 * 3 2 1 6 6 H 1.48500 * 109.47305 * 60.00126 * 3 2 1 7 7 C 1.38640 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99853 * 180.02562 * 7 2 1 9 9 O 1.34808 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.35674 * 116.99582 * 185.06396 * 9 7 2 11 11 C 1.38746 * 120.14314 * 354.40100 * 10 9 7 12 12 C 1.38114 * 120.05662 * 180.30021 * 11 10 9 13 13 C 1.38442 * 120.32382 * 359.72330 * 12 11 10 14 14 C 1.38014 * 120.27305 * 359.97438 * 13 12 11 15 15 C 1.39302 * 119.94008 * 0.02562 * 14 13 12 16 16 C 1.48272 * 120.15752 * 180.02562 * 15 14 13 17 17 C 1.39446 * 120.07125 * 129.99970 * 16 15 14 18 18 C 1.37874 * 119.92995 * 179.97438 * 17 16 15 19 19 C 1.38857 * 120.06921 * 359.97438 * 18 17 16 20 20 O 1.35882 * 119.93209 * 180.02562 * 19 18 17 21 21 C 1.38822 * 120.14660 * 0.02562 * 19 18 17 22 22 C 1.50697 * 119.97064 * 180.02562 * 21 19 18 23 23 O 1.42899 * 109.47278 * 180.02562 * 22 21 19 24 24 C 1.37920 * 120.06260 * 0.02562 * 21 19 18 25 25 H 0.97002 * 119.99902 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.96885 * 0.02562 * 11 10 9 27 27 H 1.08001 * 119.84031 * 179.74353 * 12 11 10 28 28 H 1.08005 * 119.86809 * 179.97438 * 13 12 11 29 29 H 1.08000 * 120.03096 * 180.02562 * 14 13 12 30 30 H 1.08004 * 120.03404 * 0.25513 * 17 16 15 31 31 H 1.08001 * 119.96475 * 180.02562 * 18 17 16 32 32 H 0.96695 * 114.00688 * 89.98788 * 20 19 18 33 33 H 1.08995 * 109.46794 * 300.00230 * 22 21 19 34 34 H 1.08997 * 109.46919 * 60.00123 * 22 21 19 35 35 H 0.96698 * 113.99889 * 180.02562 * 23 22 21 36 36 H 1.08002 * 120.03384 * 180.02562 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0087 -1.2007 0.0005 8 1 3.0887 -1.2007 0.0010 9 8 1.3346 -2.3681 0.0005 10 6 2.0695 -3.5036 0.1078 11 6 3.4554 -3.4404 0.0943 12 6 4.2017 -4.5980 0.1974 13 6 3.5738 -5.8258 0.3203 14 6 2.1961 -5.9037 0.3414 15 6 1.4324 -4.7432 0.2382 16 6 -0.0480 -4.8212 0.2610 17 6 -0.7780 -3.9988 1.1185 18 6 -2.1546 -4.0734 1.1369 19 6 -2.8142 -4.9659 0.3023 20 8 -4.1710 -5.0367 0.3223 21 6 -2.0905 -5.7860 -0.5526 22 6 -2.8104 -6.7527 -1.4572 23 8 -1.8561 -7.4791 -2.2341 24 6 -0.7132 -5.7169 -0.5750 25 1 -0.4850 0.8401 -0.0004 26 1 3.9511 -2.4856 -0.0013 27 1 5.2803 -4.5452 0.1824 28 1 4.1646 -6.7264 0.3999 29 1 1.7104 -6.8635 0.4378 30 1 -0.2658 -3.3010 1.7644 31 1 -2.7205 -3.4365 1.8006 32 1 -4.6054 -4.4382 -0.3007 33 1 -3.3932 -7.4491 -0.8543 34 1 -3.4763 -6.2017 -2.1213 35 1 -2.2497 -8.1210 -2.8408 36 1 -0.1507 -6.3548 -1.2406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244776419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:37 Heat of formation + Delta-G solvation = -70.409693 kcal Electronic energy + Delta-G solvation = -21887.644475 eV Core-core repulsion = 18495.651095 eV Total energy + Delta-G solvation = -3391.993381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.73367 -38.84046 -36.75631 -36.53703 -35.88065 -32.35357 -31.54327 -30.98363 -29.03889 -27.77068 -25.67998 -25.34515 -22.80926 -21.66580 -21.14413 -20.08495 -18.13691 -17.96433 -17.18036 -17.00571 -15.70204 -15.18492 -15.03239 -14.63519 -14.54295 -14.35211 -14.08924 -13.65288 -13.52317 -13.33954 -13.03025 -12.61542 -12.07810 -11.83185 -11.72464 -11.53469 -11.36289 -11.25404 -10.89668 -10.72180 -10.51121 -10.45638 -10.21102 -10.02921 -9.36681 -8.88769 -8.51592 -8.25743 -7.72175 -7.09637 -6.48348 -4.06409 1.49182 1.90442 2.27971 2.38492 3.10086 3.11793 3.16819 3.93020 4.08693 4.24729 4.55112 4.62871 5.05622 5.13432 5.21586 5.29574 5.48697 5.49774 5.54786 5.66492 5.81742 6.02938 6.06351 6.09920 6.20874 6.34298 6.55139 6.63390 6.70307 6.90553 6.95786 7.01884 7.16061 7.20018 7.34589 7.38486 7.44339 7.65873 7.79278 7.93765 7.96370 8.97030 9.66350 10.68522 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.005932 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.692458 B = 4718.723299 C = 6232.171298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.165 6.165 10 C 0.164 3.836 11 C -0.234 4.234 12 C -0.070 4.070 13 C -0.214 4.214 14 C -0.059 4.059 15 C -0.134 4.134 16 C -0.019 4.019 17 C -0.062 4.062 18 C -0.137 4.137 19 C 0.090 3.910 20 O -0.502 6.502 21 C -0.128 4.128 22 C 0.130 3.870 23 O -0.568 6.568 24 C -0.079 4.079 25 H 0.269 0.731 26 H 0.129 0.871 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.383 0.617 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.378 0.622 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -9.567 -1.466 10.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.068 6.068 10 C 0.110 3.890 11 C -0.253 4.253 12 C -0.089 4.089 13 C -0.233 4.233 14 C -0.077 4.077 15 C -0.135 4.135 16 C -0.019 4.019 17 C -0.080 4.080 18 C -0.156 4.156 19 C 0.046 3.954 20 O -0.312 6.312 21 C -0.129 4.129 22 C 0.053 3.947 23 O -0.373 6.373 24 C -0.097 4.097 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.238 0.762 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.224 0.776 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.222 -9.382 -0.712 9.945 hybrid contribution 0.029 1.027 -0.722 1.256 sum -3.193 -8.355 -1.434 9.058 Atomic orbital electron populations 1.70057 1.05832 1.27482 1.45669 1.25253 0.95834 0.98707 0.96506 0.85675 0.79203 0.80490 0.78240 1.19122 1.20187 1.20155 1.21387 0.91868 0.80851 1.52877 0.89059 1.83986 1.34015 1.11185 1.77614 1.19320 0.90038 0.87463 0.92196 1.21118 0.93532 0.99123 1.11540 1.20817 0.98516 0.92383 0.97140 1.20531 0.94153 0.97005 1.11621 1.20739 0.93434 0.96018 0.97526 1.17849 0.91125 0.91236 1.13289 1.18684 0.92165 0.95566 0.95510 1.21173 0.92796 0.96545 0.97460 1.21184 0.94877 0.98676 1.00850 1.18097 0.82196 0.97477 0.97624 1.84767 1.16018 1.65670 1.64727 1.19732 0.94450 1.00010 0.98707 1.20627 0.89566 0.92553 0.91942 1.86498 1.36114 1.56975 1.57683 1.20876 0.92709 0.98146 0.97966 0.92124 0.85380 0.87446 0.87450 0.86826 0.85186 0.85694 0.76225 0.92473 0.92977 0.77577 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.22 13.67 55.48 0.76 -23.46 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.13 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.39 -10.70 9.49 30.88 0.29 -10.40 16 8 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 9 O -0.17 -4.54 8.12 0.35 0.00 -4.54 16 10 C 0.16 3.95 6.56 -38.74 -0.25 3.70 16 11 C -0.23 -5.07 9.16 -39.44 -0.36 -5.43 16 12 C -0.07 -1.30 10.03 -39.55 -0.40 -1.69 16 13 C -0.21 -3.77 10.03 -39.59 -0.40 -4.17 16 14 C -0.06 -1.11 9.50 -39.27 -0.37 -1.48 16 15 C -0.13 -2.90 5.49 -104.72 -0.57 -3.47 16 16 C -0.02 -0.40 5.27 -104.89 -0.55 -0.96 16 17 C -0.06 -1.30 8.79 -39.27 -0.34 -1.65 16 18 C -0.14 -2.58 9.97 -39.49 -0.39 -2.98 16 19 C 0.09 1.55 6.68 -39.14 -0.26 1.29 16 20 O -0.50 -7.14 12.92 -19.37 -0.25 -7.39 16 21 C -0.13 -2.20 5.89 -104.52 -0.62 -2.82 16 22 C 0.13 1.73 6.90 36.00 0.25 1.98 16 23 O -0.57 -7.29 12.13 -35.23 -0.43 -7.72 16 24 C -0.08 -1.50 8.83 -39.26 -0.35 -1.85 16 25 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 26 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.11 1.87 8.04 -52.49 -0.42 1.45 16 30 H 0.13 2.95 7.69 -52.48 -0.40 2.55 16 31 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 32 H 0.38 3.78 9.06 45.56 0.41 4.20 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.38 2.74 9.12 45.56 0.42 3.16 16 36 H 0.13 2.44 6.98 -52.49 -0.37 2.08 16 LS Contribution 316.30 15.07 4.77 4.77 Total: -1.00 -32.17 316.30 -6.78 -38.95 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -2.18 Total: 13.18 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -4.43 Total: -28.92 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.76 Total: -23.46 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.67 Total: -19.65 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.17 -6.78 -38.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244776419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.456 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds