Wall clock time and date at job start Tue Mar 31 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48498 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47224 * 300.00004 * 3 2 1 6 6 H 1.48500 * 109.47305 * 60.00126 * 3 2 1 7 7 C 1.38640 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99853 * 180.02562 * 7 2 1 9 9 O 1.34808 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.35674 * 116.99582 * 185.06396 * 9 7 2 11 11 C 1.38746 * 120.14314 * 354.40100 * 10 9 7 12 12 C 1.38114 * 120.05662 * 180.30021 * 11 10 9 13 13 C 1.38442 * 120.32382 * 359.72330 * 12 11 10 14 14 C 1.38014 * 120.27305 * 359.97438 * 13 12 11 15 15 C 1.39302 * 119.94008 * 0.02562 * 14 13 12 16 16 C 1.48272 * 120.15752 * 180.02562 * 15 14 13 17 17 C 1.39446 * 120.07125 * 129.99970 * 16 15 14 18 18 C 1.37874 * 119.92995 * 179.97438 * 17 16 15 19 19 C 1.38857 * 120.06921 * 359.97438 * 18 17 16 20 20 O 1.35882 * 119.93209 * 180.02562 * 19 18 17 21 21 C 1.38822 * 120.14660 * 0.02562 * 19 18 17 22 22 C 1.50697 * 119.97064 * 180.02562 * 21 19 18 23 23 O 1.42899 * 109.47278 * 180.02562 * 22 21 19 24 24 C 1.37920 * 120.06260 * 0.02562 * 21 19 18 25 25 H 0.97002 * 119.99902 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.96885 * 0.02562 * 11 10 9 27 27 H 1.08001 * 119.84031 * 179.74353 * 12 11 10 28 28 H 1.08005 * 119.86809 * 179.97438 * 13 12 11 29 29 H 1.08000 * 120.03096 * 180.02562 * 14 13 12 30 30 H 1.08004 * 120.03404 * 0.25513 * 17 16 15 31 31 H 1.08001 * 119.96475 * 180.02562 * 18 17 16 32 32 H 0.96695 * 114.00688 * 89.98788 * 20 19 18 33 33 H 1.08995 * 109.46794 * 300.00230 * 22 21 19 34 34 H 1.08997 * 109.46919 * 60.00123 * 22 21 19 35 35 H 0.96698 * 113.99889 * 180.02562 * 23 22 21 36 36 H 1.08002 * 120.03384 * 180.02562 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0087 -1.2007 0.0005 8 1 3.0887 -1.2007 0.0010 9 8 1.3346 -2.3681 0.0005 10 6 2.0695 -3.5036 0.1078 11 6 3.4554 -3.4404 0.0943 12 6 4.2017 -4.5980 0.1974 13 6 3.5738 -5.8258 0.3203 14 6 2.1961 -5.9037 0.3414 15 6 1.4324 -4.7432 0.2382 16 6 -0.0480 -4.8212 0.2610 17 6 -0.7780 -3.9988 1.1185 18 6 -2.1546 -4.0734 1.1369 19 6 -2.8142 -4.9659 0.3023 20 8 -4.1710 -5.0367 0.3223 21 6 -2.0905 -5.7860 -0.5526 22 6 -2.8104 -6.7527 -1.4572 23 8 -1.8561 -7.4791 -2.2341 24 6 -0.7132 -5.7169 -0.5750 25 1 -0.4850 0.8401 -0.0004 26 1 3.9511 -2.4856 -0.0013 27 1 5.2803 -4.5452 0.1824 28 1 4.1646 -6.7264 0.3999 29 1 1.7104 -6.8635 0.4378 30 1 -0.2658 -3.3010 1.7644 31 1 -2.7205 -3.4365 1.8006 32 1 -4.6054 -4.4382 -0.3007 33 1 -3.3932 -7.4491 -0.8543 34 1 -3.4763 -6.2017 -2.1213 35 1 -2.2497 -8.1210 -2.8408 36 1 -0.1507 -6.3548 -1.2406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244776419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:37 Heat of formation + Delta-G solvation = -93.919494 kcal Electronic energy + Delta-G solvation = -21888.663937 eV Core-core repulsion = 18495.651095 eV Total energy + Delta-G solvation = -3393.012842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23184 -40.38837 -38.22087 -37.75638 -37.24493 -34.28281 -32.99503 -32.40999 -30.65764 -29.28413 -27.31963 -26.87408 -24.30073 -23.23862 -22.69295 -21.54721 -19.80325 -19.36621 -18.78984 -18.19946 -17.19613 -16.53408 -16.49052 -16.28011 -16.00131 -15.62029 -15.52336 -15.35485 -15.10109 -14.70643 -14.58094 -14.32794 -13.55135 -13.47224 -13.32886 -12.93717 -12.90139 -12.61327 -12.48168 -12.30620 -12.12911 -12.00279 -11.39208 -11.21275 -11.14045 -10.80162 -10.04074 -9.68554 -9.27900 -8.75222 -8.44470 -6.10945 0.00410 0.42169 0.69776 0.81466 1.34805 1.42465 1.51749 2.16979 2.62627 2.87574 3.19885 3.27236 3.32969 3.49539 3.80518 3.97259 4.07701 4.20117 4.28730 4.39322 4.50235 4.57468 4.58889 4.65620 4.71212 4.92289 5.04486 5.08306 5.15039 5.18868 5.43963 5.47543 5.55590 5.65200 5.75146 5.81707 5.91696 6.05181 6.23202 6.81506 6.97385 6.99662 7.80543 8.76974 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.005932 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.692458 B = 4718.723299 C = 6232.171298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.016 4.016 3 Si 1.013 2.987 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.415 4.415 8 H 0.098 0.902 9 O -0.210 6.210 10 C 0.125 3.875 11 C -0.249 4.249 12 C -0.068 4.068 13 C -0.191 4.191 14 C -0.062 4.062 15 C -0.145 4.145 16 C -0.043 4.043 17 C -0.086 4.086 18 C -0.149 4.149 19 C 0.104 3.896 20 O -0.496 6.496 21 C -0.129 4.129 22 C 0.135 3.865 23 O -0.586 6.586 24 C -0.083 4.083 25 H 0.270 0.730 26 H 0.120 0.880 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.141 0.859 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.406 0.594 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 -11.851 -2.242 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.215 4.215 3 Si 0.833 3.167 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.492 4.492 8 H 0.116 0.884 9 O -0.115 6.115 10 C 0.073 3.927 11 C -0.268 4.268 12 C -0.086 4.086 13 C -0.209 4.209 14 C -0.080 4.080 15 C -0.146 4.146 16 C -0.043 4.043 17 C -0.104 4.104 18 C -0.167 4.167 19 C 0.059 3.941 20 O -0.309 6.309 21 C -0.130 4.130 22 C 0.058 3.942 23 O -0.396 6.396 24 C -0.101 4.101 25 H 0.079 0.921 26 H 0.138 0.862 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.158 0.842 30 H 0.114 0.886 31 H 0.151 0.849 32 H 0.265 0.735 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.253 0.747 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.667 -11.724 -1.508 12.118 hybrid contribution -0.141 1.404 -0.480 1.491 sum -2.808 -10.320 -1.989 10.878 Atomic orbital electron populations 1.70201 1.07692 1.28396 1.48328 1.26438 0.96807 1.02282 0.95963 0.84597 0.78286 0.75353 0.78421 1.17728 1.19523 1.19502 1.21829 0.92444 0.81654 1.53231 0.88446 1.83972 1.35150 1.11963 1.80443 1.19891 0.91341 0.87564 0.93867 1.21279 0.92933 1.00380 1.12207 1.21245 1.00361 0.91410 0.95585 1.21104 0.93905 0.98275 1.07631 1.21139 0.94202 0.96029 0.96624 1.18266 0.92085 0.91463 1.12767 1.18818 0.92219 0.96681 0.96564 1.20988 0.93987 0.97027 0.98438 1.21337 0.94093 0.99563 1.01750 1.18009 0.83463 0.96224 0.96389 1.84706 1.14135 1.66322 1.65706 1.20206 0.93958 1.00142 0.98664 1.20647 0.89150 0.92389 0.92045 1.86429 1.36895 1.57842 1.58387 1.20937 0.93772 0.97811 0.97608 0.92055 0.86180 0.83572 0.82930 0.84155 0.88607 0.84939 0.73493 0.90586 0.90729 0.74682 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.66 13.67 21.61 0.30 -54.37 16 2 C -0.02 -0.92 5.49 84.83 0.47 -0.45 16 3 Si 1.01 42.83 29.55 68.60 2.03 44.86 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.42 -23.99 9.49 67.92 0.64 -23.35 16 8 H 0.10 5.23 5.21 -2.91 -0.02 5.21 16 9 O -0.21 -12.41 8.12 -21.68 -0.18 -12.58 16 10 C 0.12 6.30 6.56 22.81 0.15 6.45 16 11 C -0.25 -10.98 9.16 22.36 0.20 -10.77 16 12 C -0.07 -2.35 10.03 22.29 0.22 -2.13 16 13 C -0.19 -6.04 10.03 22.27 0.22 -5.81 16 14 C -0.06 -2.22 9.50 22.47 0.21 -2.01 16 15 C -0.14 -6.44 5.49 -19.93 -0.11 -6.55 16 16 C -0.04 -1.87 5.27 -20.04 -0.11 -1.98 16 17 C -0.09 -3.92 8.79 22.47 0.20 -3.72 16 18 C -0.15 -5.82 9.97 22.33 0.22 -5.60 16 19 C 0.10 3.47 6.68 22.56 0.15 3.62 16 20 O -0.50 -12.90 12.92 -92.22 -1.19 -14.09 16 21 C -0.13 -4.25 5.89 -19.80 -0.12 -4.37 16 22 C 0.13 3.14 6.90 71.24 0.49 3.63 16 23 O -0.59 -13.26 12.13 -148.98 -1.81 -15.07 16 24 C -0.08 -3.16 8.83 22.48 0.20 -2.96 16 25 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 27 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 28 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.14 4.23 8.04 -2.91 -0.02 4.21 16 30 H 0.10 4.89 7.69 -2.91 -0.02 4.87 16 31 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.41 6.87 9.06 -74.06 -0.67 6.20 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.40 4.43 9.12 -74.06 -0.68 3.75 16 36 H 0.14 4.94 6.98 -2.91 -0.02 4.92 16 Total: -1.00 -75.34 316.30 2.00 -73.35 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.20 Total: 33.90 kcal Atomic # 6 Polarization: -59.05 SS G_CDS: 3.05 Total: -56.00 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.30 Total: -54.37 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -3.17 Total: -41.74 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -75.34 2.00 -73.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244776419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.574 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds