Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76198 * 100.00189 * 2 1 4 4 N 1.32446 * 119.83154 * 354.66626 * 3 2 1 5 5 C 1.31887 * 121.76581 * 179.97438 * 4 3 2 6 6 C 1.38393 * 121.23591 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.23958 * 179.97438 * 6 5 4 8 8 C 1.38378 * 119.52060 * 0.23048 * 6 5 4 9 9 C 1.39956 * 118.37132 * 359.53587 * 8 6 5 10 10 C 1.47502 * 120.61358 * 180.21833 * 9 8 6 11 11 N 1.32710 * 120.00715 * 229.87373 * 10 9 8 12 12 C 1.31706 * 121.70631 * 179.70482 * 11 10 9 13 13 C 1.38905 * 121.52084 * 0.57678 * 12 11 10 14 14 C 1.36859 * 119.82823 * 359.71670 * 13 12 11 15 15 C 1.41117 * 118.40847 * 359.97438 * 14 13 12 16 16 C 1.40802 * 120.72798 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00313 * 207.20728 * 16 15 14 18 18 C 1.40033 * 119.99655 * 27.21279 * 16 15 14 19 19 N 1.30803 * 120.00018 * 12.36198 * 18 16 15 20 20 Si 1.86807 * 119.99985 * 192.36564 * 18 16 15 21 21 H 1.48495 * 109.46896 * 94.98066 * 20 18 16 22 22 H 1.48493 * 109.46975 * 214.97900 * 20 18 16 23 23 H 1.48499 * 109.46865 * 334.97999 * 20 18 16 24 24 H 1.09007 * 109.47536 * 184.71602 * 1 2 3 25 25 H 1.09008 * 109.47104 * 304.71483 * 1 2 3 26 26 H 1.08999 * 109.47505 * 64.71791 * 1 2 3 27 27 H 1.08007 * 119.37845 * 179.97438 * 5 4 3 28 28 H 1.09009 * 109.47017 * 89.99855 * 7 6 5 29 29 H 1.08994 * 109.47325 * 210.00024 * 7 6 5 30 30 H 1.09005 * 109.47112 * 330.00318 * 7 6 5 31 31 H 1.07999 * 120.80867 * 179.72593 * 8 6 5 32 32 H 1.08000 * 119.23907 * 180.29212 * 12 11 10 33 33 H 1.08000 * 120.08424 * 179.69684 * 13 12 11 34 34 H 1.07999 * 120.79105 * 180.02562 * 14 13 12 35 35 H 0.97000 * 119.99568 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.1038 2.5827 -0.1068 5 6 1.2890 3.8885 -0.1104 6 6 2.5564 4.4339 -0.0027 7 6 2.7423 5.9294 -0.0099 8 6 3.6522 3.5960 0.1062 9 6 3.4343 2.2135 0.1133 10 6 4.5661 1.2752 0.2320 11 7 4.6830 0.2649 -0.6206 12 6 5.6830 -0.5892 -0.5489 13 6 6.6608 -0.4819 0.4319 14 6 6.5982 0.5336 1.3473 15 6 5.5282 1.4495 1.2618 16 6 5.4158 2.5123 2.1787 17 1 4.4455 2.9268 2.4087 18 6 6.5624 3.0318 2.7921 19 7 7.7478 2.7062 2.3452 20 14 6.3991 4.1898 4.2488 21 1 6.5055 3.4152 5.5112 22 1 7.4818 5.2047 4.1981 23 1 5.0801 4.8699 4.1950 24 1 -0.3634 -1.0242 0.0845 25 1 -0.3634 0.5853 0.8448 26 1 -0.3634 0.4389 -0.9292 27 1 0.4357 4.5445 -0.2000 28 1 2.6929 6.3065 1.0117 29 1 3.7135 6.1728 -0.4406 30 1 1.9546 6.3905 -0.6059 31 1 4.6509 3.9991 0.1870 32 1 5.7417 -1.3942 -1.2664 33 1 7.4681 -1.1981 0.4721 34 1 7.3503 0.6319 2.1161 35 1 8.5420 3.0664 2.7699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244878515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = 46.550159 kcal Electronic energy + Delta-G solvation = -19872.887430 eV Core-core repulsion = 16961.011431 eV Total energy + Delta-G solvation = -2911.875999 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.58097 -38.14656 -34.25986 -33.12962 -32.49624 -30.66052 -28.93191 -28.54019 -26.83731 -25.79554 -23.26279 -22.42753 -21.38748 -20.12941 -17.56369 -17.26119 -16.08805 -15.82006 -15.30590 -14.65062 -14.45399 -13.99950 -13.85653 -13.31479 -13.13783 -13.06877 -12.64972 -12.48052 -12.36183 -12.18592 -11.97101 -11.83699 -11.58976 -11.46134 -11.16830 -11.11296 -10.67489 -10.02818 -9.78726 -9.54881 -9.10345 -9.08032 -8.98531 -8.25156 -8.07915 -7.63163 -7.01570 -6.69436 -4.62704 1.50467 1.85321 2.24232 2.54496 2.88428 2.89159 2.94246 2.97738 3.14458 3.73838 4.27969 4.48483 5.06012 5.25134 5.35455 5.49372 5.53853 5.59793 5.64426 5.71201 5.84048 5.89591 6.13400 6.19081 6.20812 6.29936 6.41999 6.61623 6.73075 6.85487 6.88349 7.00642 7.09568 7.24191 7.63668 7.74671 7.83015 8.27658 8.34320 8.51151 8.59083 9.51225 9.90250 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.008036 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.642634 B = 3483.462058 C = 4874.739877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 S -0.025 6.025 3 C 0.105 3.895 4 N -0.494 5.494 5 C 0.087 3.913 6 C -0.153 4.153 7 C -0.102 4.102 8 C -0.042 4.042 9 C 0.007 3.993 10 C 0.005 3.995 11 N -0.437 5.437 12 C -0.026 4.026 13 C -0.147 4.147 14 C -0.127 4.127 15 C 0.092 3.908 16 C -0.438 4.438 17 H 0.085 0.915 18 C 0.075 3.925 19 N -0.786 5.786 20 Si 0.910 3.090 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.258 1.258 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.146 0.854 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 2.532 -0.768 6.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 S 0.215 5.785 3 C -0.144 4.144 4 N -0.205 5.205 5 C -0.074 4.074 6 C -0.158 4.158 7 C -0.159 4.159 8 C -0.070 4.070 9 C -0.002 4.002 10 C -0.133 4.133 11 N -0.144 5.144 12 C -0.188 4.188 13 C -0.167 4.167 14 C -0.153 4.153 15 C 0.087 3.913 16 C -0.467 4.467 17 H 0.103 0.897 18 C -0.145 4.145 19 N -0.410 5.410 20 Si 0.734 3.266 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.181 1.181 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.163 0.837 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.118 0.882 34 H 0.147 0.853 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.669 1.068 -1.450 6.907 hybrid contribution 0.815 2.052 1.421 2.626 sum -5.853 3.120 -0.029 6.633 Atomic orbital electron populations 1.23470 0.98559 1.04713 1.05809 1.86280 1.02394 0.98468 1.91398 1.23233 0.91228 0.98261 1.01641 1.67806 1.33314 1.03957 1.15463 1.22317 0.95648 0.90776 0.98650 1.20678 0.94230 0.96902 1.03949 1.20626 1.02306 0.90966 1.02009 1.21610 0.99286 0.91751 0.94376 1.18951 0.91087 0.92910 0.97222 1.19188 0.98941 0.97778 0.97386 1.66999 1.21319 1.01728 1.24348 1.21683 0.94353 1.01027 1.01702 1.21472 0.98944 0.98866 0.97419 1.21442 1.00425 0.93555 0.99873 1.18287 0.90531 0.92001 0.90481 1.19563 0.94424 1.13566 1.19179 0.89732 1.25998 0.94588 0.96743 0.97151 1.69755 0.99047 1.36567 1.35657 0.86236 0.79601 0.79793 0.81017 1.19057 1.19898 1.18141 0.89261 0.90298 0.90271 0.83693 0.91428 0.91573 0.91908 0.83996 0.85977 0.88227 0.85318 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.67 101.05 0.98 -1.40 16 2 S -0.02 -0.48 20.65 -107.50 -2.22 -2.70 16 3 C 0.10 2.24 7.00 -16.36 -0.11 2.13 16 4 N -0.49 -9.59 9.12 -11.66 -0.11 -9.69 16 5 C 0.09 1.48 10.84 -17.47 -0.19 1.29 16 6 C -0.15 -2.62 5.89 -104.51 -0.62 -3.24 16 7 C -0.10 -1.32 10.03 36.01 0.36 -0.96 16 8 C -0.04 -0.87 7.82 -38.89 -0.30 -1.17 16 9 C 0.01 0.16 5.08 -104.55 -0.53 -0.37 16 10 C 0.01 0.12 5.84 -82.27 -0.48 -0.36 16 11 N -0.44 -10.60 8.83 -9.20 -0.08 -10.68 16 12 C -0.03 -0.58 11.16 -17.36 -0.19 -0.77 16 13 C -0.15 -3.28 10.03 -39.83 -0.40 -3.68 16 14 C -0.13 -3.12 8.72 -38.99 -0.34 -3.46 16 15 C 0.09 2.32 5.57 -106.40 -0.59 1.73 16 16 C -0.44 -10.73 7.17 -37.94 -0.27 -11.00 16 17 H 0.08 2.07 6.67 -52.49 -0.35 1.72 16 18 C 0.07 1.72 5.25 -17.32 -0.09 1.63 16 19 N -0.79 -18.59 10.86 55.55 0.60 -17.99 16 20 Si 0.91 17.43 29.58 -169.99 -5.03 12.40 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 24 H 0.09 1.13 8.14 -51.91 -0.42 0.70 16 25 H 0.08 1.20 8.07 -51.91 -0.42 0.79 16 26 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 28 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.14 2.97 7.38 -52.49 -0.39 2.58 16 32 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 33 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.13 3.19 6.26 -52.49 -0.33 2.86 16 35 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -27.33 311.88 -8.91 -36.24 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.00 Total: 7.36 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -2.79 Total: -19.63 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.42 Total: -38.36 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.22 Total: -2.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.33 -8.91 -36.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244878515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.795 kcal (2) G-P(sol) polarization free energy of solvation -27.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds