Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76198 * 100.00189 * 2 1 4 4 N 1.32446 * 119.83154 * 354.66626 * 3 2 1 5 5 C 1.31887 * 121.76581 * 179.97438 * 4 3 2 6 6 C 1.38393 * 121.23591 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.23958 * 179.97438 * 6 5 4 8 8 C 1.38378 * 119.52060 * 0.23048 * 6 5 4 9 9 C 1.39956 * 118.37132 * 359.53587 * 8 6 5 10 10 C 1.47502 * 120.61358 * 180.21833 * 9 8 6 11 11 N 1.32710 * 120.00715 * 229.87373 * 10 9 8 12 12 C 1.31706 * 121.70631 * 179.70482 * 11 10 9 13 13 C 1.38905 * 121.52084 * 0.57678 * 12 11 10 14 14 C 1.36859 * 119.82823 * 359.71670 * 13 12 11 15 15 C 1.41117 * 118.40847 * 359.97438 * 14 13 12 16 16 C 1.40802 * 120.72798 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00313 * 207.20728 * 16 15 14 18 18 C 1.40033 * 119.99655 * 27.21279 * 16 15 14 19 19 N 1.30803 * 120.00018 * 12.36198 * 18 16 15 20 20 Si 1.86807 * 119.99985 * 192.36564 * 18 16 15 21 21 H 1.48495 * 109.46896 * 94.98066 * 20 18 16 22 22 H 1.48493 * 109.46975 * 214.97900 * 20 18 16 23 23 H 1.48499 * 109.46865 * 334.97999 * 20 18 16 24 24 H 1.09007 * 109.47536 * 184.71602 * 1 2 3 25 25 H 1.09008 * 109.47104 * 304.71483 * 1 2 3 26 26 H 1.08999 * 109.47505 * 64.71791 * 1 2 3 27 27 H 1.08007 * 119.37845 * 179.97438 * 5 4 3 28 28 H 1.09009 * 109.47017 * 89.99855 * 7 6 5 29 29 H 1.08994 * 109.47325 * 210.00024 * 7 6 5 30 30 H 1.09005 * 109.47112 * 330.00318 * 7 6 5 31 31 H 1.07999 * 120.80867 * 179.72593 * 8 6 5 32 32 H 1.08000 * 119.23907 * 180.29212 * 12 11 10 33 33 H 1.08000 * 120.08424 * 179.69684 * 13 12 11 34 34 H 1.07999 * 120.79105 * 180.02562 * 14 13 12 35 35 H 0.97000 * 119.99568 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.1038 2.5827 -0.1068 5 6 1.2890 3.8885 -0.1104 6 6 2.5564 4.4339 -0.0027 7 6 2.7423 5.9294 -0.0099 8 6 3.6522 3.5960 0.1062 9 6 3.4343 2.2135 0.1133 10 6 4.5661 1.2752 0.2320 11 7 4.6830 0.2649 -0.6206 12 6 5.6830 -0.5892 -0.5489 13 6 6.6608 -0.4819 0.4319 14 6 6.5982 0.5336 1.3473 15 6 5.5282 1.4495 1.2618 16 6 5.4158 2.5123 2.1787 17 1 4.4455 2.9268 2.4087 18 6 6.5624 3.0318 2.7921 19 7 7.7478 2.7062 2.3452 20 14 6.3991 4.1898 4.2488 21 1 6.5055 3.4152 5.5112 22 1 7.4818 5.2047 4.1981 23 1 5.0801 4.8699 4.1950 24 1 -0.3634 -1.0242 0.0845 25 1 -0.3634 0.5853 0.8448 26 1 -0.3634 0.4389 -0.9292 27 1 0.4357 4.5445 -0.2000 28 1 2.6929 6.3065 1.0117 29 1 3.7135 6.1728 -0.4406 30 1 1.9546 6.3905 -0.6059 31 1 4.6509 3.9991 0.1870 32 1 5.7417 -1.3942 -1.2664 33 1 7.4681 -1.1981 0.4721 34 1 7.3503 0.6319 2.1161 35 1 8.5420 3.0664 2.7699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244878515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = 32.696533 kcal Electronic energy + Delta-G solvation = -19873.488168 eV Core-core repulsion = 16961.011431 eV Total energy + Delta-G solvation = -2912.476737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12361 -39.86034 -36.03491 -34.50272 -34.10053 -32.47107 -30.61584 -29.78591 -28.13152 -27.54568 -24.86280 -23.99977 -23.11188 -21.75857 -19.32091 -18.79517 -17.66502 -17.48241 -16.93942 -16.20331 -16.06498 -15.64941 -15.29201 -14.70145 -14.55186 -14.32148 -14.19250 -14.15729 -13.83401 -13.50004 -13.29624 -13.27015 -13.22224 -13.11485 -12.79210 -12.55588 -12.21833 -11.73219 -11.30122 -11.23172 -10.69586 -10.58654 -10.43015 -10.04814 -9.87366 -9.40380 -8.73916 -8.23368 -6.46127 -0.02441 0.31250 0.76727 0.84429 1.13902 1.35807 1.46028 1.48622 1.58530 2.14072 2.69608 2.80566 3.59160 3.66627 3.93481 4.04845 4.17656 4.31281 4.38684 4.39135 4.42285 4.49973 4.71643 4.80934 4.88470 4.92674 4.98766 5.01590 5.15104 5.18244 5.25763 5.34093 5.48332 5.75643 5.84097 5.94348 6.01496 6.45988 6.70157 6.76707 6.86296 7.70426 8.19481 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.008036 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.642634 B = 3483.462058 C = 4874.739877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.075 6.075 3 C 0.092 3.908 4 N -0.497 5.497 5 C 0.092 3.908 6 C -0.143 4.143 7 C -0.099 4.099 8 C -0.057 4.057 9 C -0.029 4.029 10 C -0.004 4.004 11 N -0.451 5.451 12 C -0.035 4.035 13 C -0.145 4.145 14 C -0.151 4.151 15 C 0.064 3.936 16 C -0.456 4.456 17 H 0.075 0.925 18 C 0.041 3.959 19 N -0.813 5.813 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.262 1.262 23 H -0.257 1.257 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.192 0.808 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.151 0.849 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.716 4.030 -0.620 8.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.163 5.837 3 C -0.156 4.156 4 N -0.209 5.209 5 C -0.069 4.069 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.085 4.085 9 C -0.038 4.038 10 C -0.142 4.142 11 N -0.158 5.158 12 C -0.197 4.197 13 C -0.165 4.165 14 C -0.177 4.177 15 C 0.059 3.941 16 C -0.485 4.485 17 H 0.093 0.907 18 C -0.176 4.176 19 N -0.438 5.438 20 Si 0.796 3.204 21 H -0.188 1.188 22 H -0.186 1.186 23 H -0.180 1.180 24 H 0.136 0.864 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.208 0.792 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.148 0.852 34 H 0.138 0.862 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.246 2.550 -1.319 8.731 hybrid contribution 1.222 1.601 1.288 2.391 sum -7.024 4.151 -0.031 8.159 Atomic orbital electron populations 1.23458 0.94309 1.06606 1.06000 1.86304 1.07113 0.98683 1.91562 1.23241 0.91124 0.98956 1.02274 1.67877 1.32530 1.04893 1.15554 1.23111 0.97031 0.90462 0.96279 1.21114 0.93217 0.98897 1.01586 1.20727 1.03668 0.87797 1.03439 1.21628 0.99842 0.91602 0.95430 1.19090 0.91345 0.93599 0.99719 1.19538 0.99479 0.98102 0.97047 1.67082 1.21945 1.02150 1.24665 1.22227 0.93880 1.01383 1.02165 1.21752 0.99579 0.98649 0.96485 1.21490 1.00709 0.94735 1.00803 1.18632 0.91361 0.92809 0.91278 1.19579 0.94620 1.14104 1.20191 0.90662 1.26729 0.93829 0.97926 0.99106 1.69789 0.99776 1.37501 1.36689 0.85259 0.79759 0.77923 0.77459 1.18804 1.18614 1.18009 0.86431 0.90238 0.89796 0.79160 0.90179 0.91517 0.88617 0.85590 0.83185 0.85187 0.86250 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.67 113.37 1.10 -2.78 16 2 S -0.08 -3.01 20.65 -56.49 -1.17 -4.17 16 3 C 0.09 3.94 7.00 85.20 0.60 4.54 16 4 N -0.50 -18.56 9.12 -190.79 -1.74 -20.30 16 5 C 0.09 2.89 10.84 84.72 0.92 3.81 16 6 C -0.14 -4.67 5.89 -19.79 -0.12 -4.78 16 7 C -0.10 -2.26 10.03 71.24 0.71 -1.55 16 8 C -0.06 -2.38 7.82 22.72 0.18 -2.20 16 9 C -0.03 -1.35 5.08 -19.82 -0.10 -1.45 16 10 C 0.00 -0.18 5.84 42.39 0.25 0.06 16 11 N -0.45 -22.49 8.83 -183.02 -1.62 -24.11 16 12 C -0.04 -1.61 11.16 84.87 0.95 -0.66 16 13 C -0.14 -6.56 10.03 22.11 0.22 -6.33 16 14 C -0.15 -7.71 8.72 22.65 0.20 -7.51 16 15 C 0.06 3.38 5.57 -21.01 -0.12 3.26 16 16 C -0.46 -23.19 7.17 23.33 0.17 -23.02 16 17 H 0.08 3.84 6.67 -2.91 -0.02 3.82 16 18 C 0.04 1.92 5.25 85.28 0.45 2.37 16 19 N -0.81 -39.33 10.86 21.84 0.24 -39.09 16 20 Si 0.98 35.71 29.58 68.60 2.03 37.74 16 21 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 23 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 24 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 26 H 0.08 2.34 8.14 -2.40 -0.02 2.32 16 27 H 0.19 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 30 H 0.10 1.58 8.09 -2.38 -0.02 1.57 16 31 H 0.13 5.51 7.38 -2.91 -0.02 5.49 16 32 H 0.15 5.81 8.06 -2.91 -0.02 5.79 16 33 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.12 6.18 6.26 -2.91 -0.02 6.16 16 35 H 0.29 12.76 8.30 -92.71 -0.77 11.99 16 Total: -1.00 -61.73 311.88 4.25 -57.48 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 1.11 Total: 28.70 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 5.40 Total: -36.25 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -3.12 Total: -83.50 kcal Atomic # 14 Polarization: 35.71 SS G_CDS: 2.03 Total: 37.74 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -1.17 Total: -4.17 kcal Total: -61.73 4.25 -57.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244878515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.177 kcal (2) G-P(sol) polarization free energy of solvation -61.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds