Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76195 * 99.99799 * 2 1 4 4 N 1.32437 * 119.83000 * 359.72159 * 3 2 1 5 5 C 1.31894 * 121.76528 * 179.75130 * 4 3 2 6 6 C 1.38378 * 121.21176 * 0.53097 * 5 4 3 7 7 C 1.50703 * 120.24109 * 179.71581 * 6 5 4 8 8 C 1.38401 * 119.51629 * 359.74562 * 6 5 4 9 9 C 1.39878 * 118.37583 * 359.97438 * 8 6 5 10 10 C 1.47683 * 120.60651 * 180.02562 * 9 8 6 11 11 C 1.40048 * 119.46029 * 312.53704 * 10 9 8 12 12 C 1.36516 * 119.46087 * 179.97438 * 11 10 9 13 13 C 1.41355 * 118.42725 * 359.97438 * 12 11 10 14 14 C 1.40988 * 120.54097 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99702 * 150.37412 * 14 13 12 16 16 C 1.39976 * 120.00174 * 330.37030 * 14 13 12 17 17 N 1.30821 * 119.99946 * 345.01817 * 16 14 13 18 18 Si 1.86800 * 120.00032 * 165.01408 * 16 14 13 19 19 H 1.48499 * 109.47088 * 90.00228 * 18 16 14 20 20 H 1.48498 * 109.47232 * 210.00249 * 18 16 14 21 21 H 1.48498 * 109.47002 * 330.00470 * 18 16 14 22 22 C 1.40969 * 118.91266 * 0.02562 * 13 12 11 23 23 N 1.31243 * 120.41261 * 359.74337 * 22 13 12 24 24 H 1.08999 * 109.47434 * 60.00070 * 1 2 3 25 25 H 1.09009 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47332 * 299.99573 * 1 2 3 27 27 H 1.07998 * 119.39518 * 180.25459 * 5 4 3 28 28 H 1.09000 * 109.47371 * 270.02625 * 7 6 5 29 29 H 1.09005 * 109.46764 * 30.02606 * 7 6 5 30 30 H 1.09001 * 109.46738 * 150.02639 * 7 6 5 31 31 H 1.07997 * 120.81631 * 180.02562 * 8 6 5 32 32 H 1.08002 * 120.27006 * 359.97438 * 11 10 9 33 33 H 1.07995 * 120.78306 * 180.02562 * 12 11 10 34 34 H 0.97001 * 119.99904 * 179.97438 * 17 16 14 35 35 H 1.07997 * 119.79286 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0988 2.5834 -0.0056 5 6 1.2838 3.8893 -0.0009 6 6 2.5562 4.4334 -0.0009 7 6 2.7422 5.9289 -0.0020 8 6 3.6566 3.5940 -0.0005 9 6 3.4388 2.2123 0.0004 10 6 4.5773 1.2717 0.0014 11 6 5.6337 1.4678 -0.8969 12 6 6.6864 0.5986 -0.8956 13 6 6.6701 -0.4766 0.0219 14 6 7.7339 -1.4010 0.0612 15 1 7.9855 -1.8955 0.9878 16 6 8.4638 -1.6780 -1.1006 17 7 7.9949 -1.3205 -2.2685 18 14 10.1074 -2.5579 -0.9836 19 1 9.8908 -4.0246 -1.0683 20 1 10.9831 -2.1216 -2.1006 21 1 10.7548 -2.2272 0.3113 22 6 5.5723 -0.6100 0.8961 23 7 4.5853 0.2543 0.8600 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.4265 4.5461 -0.0016 28 1 2.7869 6.2887 -1.0299 29 1 1.9039 6.3996 0.5116 30 1 3.6703 6.1799 0.5116 31 1 4.6590 3.9960 -0.0001 32 1 5.6157 2.3000 -1.5851 33 1 7.5124 0.7299 -1.5788 34 1 8.5009 -1.5121 -3.0735 35 1 5.5450 -1.4265 1.6025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244879595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = 30.447457 kcal Electronic energy + Delta-G solvation = -19164.142447 eV Core-core repulsion = 16251.568183 eV Total energy + Delta-G solvation = -2912.574264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14675 -39.93716 -36.11667 -34.57198 -33.81807 -32.59757 -31.02504 -29.82189 -28.10946 -27.44877 -24.69345 -24.13182 -23.11056 -21.98056 -19.31400 -18.94367 -17.68867 -17.37825 -17.03908 -16.29479 -16.10832 -15.60837 -15.35477 -14.69826 -14.56050 -14.34016 -14.26203 -14.19590 -13.74664 -13.57171 -13.52491 -13.23913 -13.20691 -13.15186 -12.83212 -12.51189 -12.25128 -11.75748 -11.28984 -11.19575 -10.76656 -10.61249 -10.48025 -10.22638 -9.91289 -9.40233 -8.76409 -8.26942 -6.46905 -0.09073 0.22871 0.74193 0.82787 1.08118 1.39672 1.49524 1.54018 1.55703 2.17181 2.60787 2.79540 3.52932 3.61625 3.87328 3.96500 4.09657 4.20903 4.28413 4.36749 4.39712 4.44824 4.70923 4.75637 4.87961 4.90715 4.94574 4.96719 5.12690 5.17119 5.19865 5.33395 5.36486 5.66029 5.82063 5.88587 5.96146 6.43998 6.69223 6.72973 6.81716 7.66055 8.20161 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.004519 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.953402 B = 6194.639223 C = 7079.987048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.080 6.080 3 C 0.098 3.902 4 N -0.498 5.498 5 C 0.093 3.907 6 C -0.134 4.134 7 C -0.100 4.100 8 C -0.073 4.073 9 C -0.043 4.043 10 C -0.004 4.004 11 C -0.121 4.121 12 C -0.152 4.152 13 C 0.051 3.949 14 C -0.473 4.473 15 H 0.090 0.910 16 C 0.037 3.963 17 N -0.816 5.816 18 Si 0.989 3.011 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.255 1.255 22 C -0.030 4.030 23 N -0.441 5.441 24 H 0.082 0.918 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.191 0.809 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.294 0.706 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 9.202 0.841 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.160 5.840 3 C -0.150 4.150 4 N -0.210 5.210 5 C -0.068 4.068 6 C -0.139 4.139 7 C -0.157 4.157 8 C -0.101 4.101 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.141 4.141 12 C -0.177 4.177 13 C 0.047 3.953 14 C -0.502 4.502 15 H 0.108 0.892 16 C -0.181 4.181 17 N -0.441 5.441 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.179 1.179 22 C -0.194 4.194 23 N -0.148 5.148 24 H 0.101 0.899 25 H 0.133 0.867 26 H 0.102 0.898 27 H 0.208 0.792 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.323 7.680 1.137 11.382 hybrid contribution 1.511 0.736 -0.757 1.843 sum -6.812 8.416 0.380 10.834 Atomic orbital electron populations 1.23458 0.94317 1.06585 1.06051 1.86717 1.07146 0.99078 1.91089 1.23191 0.91240 0.98702 1.01844 1.67903 1.32725 1.05065 1.15288 1.23198 0.97525 0.90299 0.95821 1.21125 0.92927 0.99046 1.00807 1.20753 1.03997 0.87313 1.03650 1.21722 1.00529 0.90728 0.97091 1.19246 0.91241 0.93785 1.00948 1.18960 0.96255 0.98383 1.00403 1.21423 0.94446 0.99674 0.98555 1.21205 0.99115 0.94983 1.02421 1.18879 0.92791 0.92041 0.91632 1.19857 1.12275 1.20880 0.97148 0.89196 1.26885 1.02296 0.95156 0.93717 1.69831 1.37988 1.36407 0.99830 0.85089 0.75832 0.78611 0.79585 1.18582 1.18980 1.17854 1.22698 0.91454 1.00199 1.05017 1.67057 1.26198 1.01700 1.19891 0.89927 0.86719 0.89789 0.79237 0.89653 0.89108 0.90885 0.83846 0.86304 0.86958 0.89500 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.65 113.37 1.09 -2.73 16 2 S -0.08 -3.16 20.53 -56.49 -1.16 -4.32 16 3 C 0.10 3.89 7.00 85.19 0.60 4.49 16 4 N -0.50 -16.84 9.13 -190.86 -1.74 -18.58 16 5 C 0.09 2.46 10.84 84.72 0.92 3.38 16 6 C -0.13 -3.43 5.89 -19.79 -0.12 -3.54 16 7 C -0.10 -1.57 10.03 71.24 0.71 -0.86 16 8 C -0.07 -2.39 9.24 22.71 0.21 -2.18 16 9 C -0.04 -1.78 5.63 -19.80 -0.11 -1.89 16 10 C 0.00 -0.17 5.86 41.88 0.25 0.07 16 11 C -0.12 -5.70 9.43 22.31 0.21 -5.49 16 12 C -0.15 -7.82 8.69 22.63 0.20 -7.63 16 13 C 0.05 2.71 5.53 -21.17 -0.12 2.60 16 14 C -0.47 -24.17 9.04 23.37 0.21 -23.96 16 15 H 0.09 4.35 7.89 -2.91 -0.02 4.32 16 16 C 0.04 1.73 5.18 85.26 0.44 2.18 16 17 N -0.82 -40.72 11.17 21.83 0.24 -40.47 16 18 Si 0.99 35.72 29.59 68.60 2.03 37.75 16 19 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 20 H -0.27 -9.12 7.11 99.48 0.71 -8.42 16 21 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 22 C -0.03 -1.54 10.97 85.45 0.94 -0.61 16 23 N -0.44 -22.19 8.65 -182.79 -1.58 -23.77 16 24 H 0.08 2.26 8.12 -2.40 -0.02 2.24 16 25 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.08 2.31 8.13 -2.40 -0.02 2.29 16 27 H 0.19 3.36 8.06 -2.91 -0.02 3.33 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.03 8.09 -2.38 -0.02 1.01 16 30 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 31 H 0.14 4.28 8.03 -2.91 -0.02 4.26 16 32 H 0.12 4.92 7.98 -2.91 -0.02 4.90 16 33 H 0.11 5.87 6.54 -2.91 -0.02 5.85 16 34 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 35 H 0.14 6.57 8.06 -2.91 -0.02 6.54 16 Total: -1.00 -63.06 316.94 4.32 -58.73 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.10 Total: 26.84 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 5.43 Total: -36.17 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -3.08 Total: -82.83 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -1.16 Total: -4.32 kcal Total: -63.06 4.32 -58.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244879595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.182 kcal (2) G-P(sol) polarization free energy of solvation -63.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds