Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76204 * 100.00137 * 2 1 4 4 N 1.32435 * 119.83240 * 0.24886 * 3 2 1 5 5 C 1.31899 * 121.76989 * 180.28802 * 4 3 2 6 6 C 1.38413 * 121.23158 * 359.74612 * 5 4 3 7 7 C 1.50697 * 120.23666 * 179.97438 * 6 5 4 8 8 C 1.38373 * 119.52536 * 359.97438 * 6 5 4 9 9 C 1.39960 * 118.37382 * 359.97438 * 8 6 5 10 10 C 1.47519 * 120.61887 * 180.02562 * 9 8 6 11 11 C 1.39858 * 120.66558 * 65.02159 * 10 9 8 12 12 C 1.38271 * 118.47077 * 179.97438 * 11 10 9 13 13 C 1.39115 * 119.75304 * 359.97438 * 12 11 10 14 14 N 1.31251 * 121.37340 * 0.02562 * 13 12 11 15 15 C 1.33742 * 121.64240 * 359.97438 * 14 13 12 16 16 C 1.40686 * 119.95375 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00166 * 175.83867 * 16 15 14 18 18 C 1.40112 * 120.00122 * 355.84405 * 16 15 14 19 19 N 1.30718 * 119.99967 * 6.79521 * 18 16 15 20 20 Si 1.86803 * 120.00052 * 186.79736 * 18 16 15 21 21 H 1.48503 * 109.46817 * 94.97580 * 20 18 16 22 22 H 1.48491 * 109.47055 * 214.97664 * 20 18 16 23 23 H 1.48497 * 109.47098 * 334.97974 * 20 18 16 24 24 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47172 * 299.99947 * 1 2 3 26 26 H 1.09001 * 109.47530 * 59.99762 * 1 2 3 27 27 H 1.07993 * 119.38198 * 179.72311 * 5 4 3 28 28 H 1.08994 * 109.47191 * 270.02439 * 7 6 5 29 29 H 1.09004 * 109.47171 * 30.02423 * 7 6 5 30 30 H 1.09002 * 109.47347 * 150.02204 * 7 6 5 31 31 H 1.08001 * 120.81454 * 180.02562 * 8 6 5 32 32 H 1.08001 * 120.75898 * 359.97438 * 11 10 9 33 33 H 1.07999 * 120.12602 * 180.02562 * 12 11 10 34 34 H 1.08004 * 119.31052 * 180.27646 * 13 12 11 35 35 H 0.97000 * 119.99846 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0990 2.5836 0.0050 5 6 1.2840 3.8895 -0.0005 6 6 2.5565 4.4341 -0.0064 7 6 2.7419 5.9296 -0.0132 8 6 3.6571 3.5955 -0.0062 9 6 3.4398 2.2128 0.0007 10 6 4.5773 1.2735 0.0019 11 6 5.4538 1.2160 1.0902 12 6 6.5045 0.3183 1.0436 13 6 6.6654 -0.4989 -0.0706 14 7 5.8380 -0.4383 -1.0877 15 6 4.8035 0.4092 -1.1011 16 6 3.9389 0.4448 -2.2103 17 1 3.0655 1.0798 -2.1941 18 6 4.2109 -0.3436 -3.3362 19 7 5.1897 -1.2096 -3.3067 20 14 3.1748 -0.1573 -4.8794 21 1 3.8442 0.7822 -5.8145 22 1 3.0197 -1.4810 -5.5342 23 1 1.8370 0.3751 -4.5161 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.4266 4.5461 -0.0006 28 1 2.7832 6.2860 -1.0424 29 1 1.9051 6.4018 0.5016 30 1 3.6715 6.1828 0.4965 31 1 4.6593 3.9979 -0.0104 32 1 5.3131 1.8579 1.9472 33 1 7.1972 0.2513 1.8695 34 1 7.4860 -1.2007 -0.0975 35 1 5.3777 -1.7557 -4.0860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244879986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = 58.456155 kcal Electronic energy + Delta-G solvation = -19980.392911 eV Core-core repulsion = 17069.033195 eV Total energy + Delta-G solvation = -2911.359716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.58683 -37.95309 -33.72812 -33.20735 -32.76132 -30.33927 -28.85556 -28.47174 -26.85362 -25.75000 -23.42449 -22.15233 -21.39004 -20.07077 -17.57661 -17.33752 -16.14189 -15.62064 -14.99868 -14.57840 -14.36536 -14.23801 -13.81064 -13.28160 -13.13463 -12.95864 -12.67462 -12.40804 -12.37636 -12.18777 -11.98889 -11.82427 -11.40220 -11.26656 -11.08300 -10.93619 -10.47746 -10.08177 -9.73440 -9.41333 -9.24009 -9.09815 -8.78392 -8.16924 -7.62229 -7.60851 -6.64513 -6.46371 -4.54602 1.52778 1.81004 2.30525 2.68085 2.84824 3.04969 3.06282 3.11112 3.20343 3.90942 4.22835 4.69549 5.07104 5.20201 5.28771 5.48475 5.61528 5.65173 5.65904 5.74229 5.86275 5.91823 6.05597 6.08632 6.15156 6.23449 6.43415 6.50169 6.66606 6.73792 6.87691 7.03722 7.14807 7.29350 7.52396 7.68074 7.98290 8.20264 8.32000 8.57052 8.87121 10.02882 10.21102 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.008258 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.842836 B = 3390.027214 C = 4055.331489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 S -0.009 6.009 3 C 0.106 3.894 4 N -0.491 5.491 5 C 0.084 3.916 6 C -0.151 4.151 7 C -0.101 4.101 8 C -0.072 4.072 9 C 0.006 3.994 10 C -0.249 4.249 11 C -0.023 4.023 12 C -0.324 4.324 13 C 0.136 3.864 14 N -0.480 5.480 15 C 0.275 3.725 16 C -0.394 4.394 17 H 0.085 0.915 18 C 0.072 3.928 19 N -0.704 5.704 20 Si 0.899 3.101 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.258 1.258 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.177 6.417 3.518 8.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 S 0.232 5.768 3 C -0.142 4.142 4 N -0.203 5.203 5 C -0.076 4.076 6 C -0.156 4.156 7 C -0.159 4.159 8 C -0.099 4.099 9 C -0.003 4.003 10 C -0.255 4.255 11 C -0.048 4.048 12 C -0.347 4.347 13 C -0.033 4.033 14 N -0.191 5.191 15 C 0.152 3.848 16 C -0.424 4.424 17 H 0.103 0.897 18 C -0.155 4.155 19 N -0.324 5.324 20 Si 0.723 3.277 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.182 1.182 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.210 4.266 2.626 7.228 hybrid contribution -0.503 2.117 0.079 2.177 sum -5.713 6.383 2.705 8.983 Atomic orbital electron populations 1.23479 0.98787 1.04832 1.05713 1.86573 1.02243 0.97726 1.90211 1.23451 0.91197 0.98508 1.01053 1.67830 1.33598 1.03895 1.15003 1.22310 0.95555 0.90874 0.98902 1.20646 0.94272 0.96691 1.04022 1.20620 1.02143 0.91113 1.01999 1.21539 0.98475 0.92122 0.97781 1.19214 0.92118 0.92873 0.96089 1.19077 1.00135 1.06351 0.99947 1.20800 0.92968 0.95721 0.95304 1.21152 1.04140 1.07238 1.02176 1.22611 0.96242 0.94781 0.89700 1.68771 1.04430 1.21428 1.24460 1.18398 0.89787 0.86511 0.90088 1.19580 1.06648 1.19231 0.96937 0.89667 1.26081 0.95072 0.94047 1.00349 1.70118 1.21485 1.12142 1.28624 0.86415 0.81331 0.78815 0.81153 1.19382 1.19793 1.18168 0.89162 0.90494 0.90105 0.83772 0.91493 0.91861 0.91796 0.85284 0.88829 0.88707 0.86381 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.65 101.05 0.97 -1.60 16 2 S -0.01 -0.19 19.45 -107.50 -2.09 -2.28 16 3 C 0.11 2.25 5.91 -16.35 -0.10 2.16 16 4 N -0.49 -9.47 9.13 -11.64 -0.11 -9.58 16 5 C 0.08 1.39 10.84 -17.46 -0.19 1.20 16 6 C -0.15 -2.40 5.89 -104.51 -0.62 -3.02 16 7 C -0.10 -1.17 10.03 36.00 0.36 -0.81 16 8 C -0.07 -1.34 9.57 -38.89 -0.37 -1.71 16 9 C 0.01 0.13 4.53 -104.53 -0.47 -0.34 16 10 C -0.25 -5.92 4.69 -104.09 -0.49 -6.40 16 11 C -0.02 -0.52 9.89 -38.96 -0.39 -0.91 16 12 C -0.32 -7.10 10.10 -39.24 -0.40 -7.50 16 13 C 0.14 3.22 11.17 -17.47 -0.20 3.03 16 14 N -0.48 -12.84 7.87 -10.89 -0.09 -12.92 16 15 C 0.28 7.22 6.01 -84.69 -0.51 6.71 16 16 C -0.39 -10.23 7.26 -37.95 -0.28 -10.51 16 17 H 0.09 2.21 5.70 -52.49 -0.30 1.91 16 18 C 0.07 1.79 5.49 -17.32 -0.10 1.69 16 19 N -0.70 -18.19 11.48 55.56 0.64 -17.55 16 20 Si 0.90 18.72 29.57 -169.99 -5.03 13.69 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 H 0.09 1.25 8.14 -51.91 -0.42 0.82 16 25 H 0.08 1.18 8.12 -51.92 -0.42 0.76 16 26 H 0.08 1.32 8.13 -51.92 -0.42 0.90 16 27 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 32 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 35 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -28.97 312.85 -8.79 -37.76 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.08 Total: 4.17 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -2.76 Total: -18.00 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.45 Total: -40.05 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.09 Total: -2.28 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.97 -8.79 -37.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244879986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.215 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds