Wall clock time and date at job start Tue Mar 31 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76204 * 100.00137 * 2 1 4 4 N 1.32435 * 119.83240 * 0.24886 * 3 2 1 5 5 C 1.31899 * 121.76989 * 180.28802 * 4 3 2 6 6 C 1.38413 * 121.23158 * 359.74612 * 5 4 3 7 7 C 1.50697 * 120.23666 * 179.97438 * 6 5 4 8 8 C 1.38373 * 119.52536 * 359.97438 * 6 5 4 9 9 C 1.39960 * 118.37382 * 359.97438 * 8 6 5 10 10 C 1.47519 * 120.61887 * 180.02562 * 9 8 6 11 11 C 1.39858 * 120.66558 * 65.02159 * 10 9 8 12 12 C 1.38271 * 118.47077 * 179.97438 * 11 10 9 13 13 C 1.39115 * 119.75304 * 359.97438 * 12 11 10 14 14 N 1.31251 * 121.37340 * 0.02562 * 13 12 11 15 15 C 1.33742 * 121.64240 * 359.97438 * 14 13 12 16 16 C 1.40686 * 119.95375 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00166 * 175.83867 * 16 15 14 18 18 C 1.40112 * 120.00122 * 355.84405 * 16 15 14 19 19 N 1.30718 * 119.99967 * 6.79521 * 18 16 15 20 20 Si 1.86803 * 120.00052 * 186.79736 * 18 16 15 21 21 H 1.48503 * 109.46817 * 94.97580 * 20 18 16 22 22 H 1.48491 * 109.47055 * 214.97664 * 20 18 16 23 23 H 1.48497 * 109.47098 * 334.97974 * 20 18 16 24 24 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47172 * 299.99947 * 1 2 3 26 26 H 1.09001 * 109.47530 * 59.99762 * 1 2 3 27 27 H 1.07993 * 119.38198 * 179.72311 * 5 4 3 28 28 H 1.08994 * 109.47191 * 270.02439 * 7 6 5 29 29 H 1.09004 * 109.47171 * 30.02423 * 7 6 5 30 30 H 1.09002 * 109.47347 * 150.02204 * 7 6 5 31 31 H 1.08001 * 120.81454 * 180.02562 * 8 6 5 32 32 H 1.08001 * 120.75898 * 359.97438 * 11 10 9 33 33 H 1.07999 * 120.12602 * 180.02562 * 12 11 10 34 34 H 1.08004 * 119.31052 * 180.27646 * 13 12 11 35 35 H 0.97000 * 119.99846 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0990 2.5836 0.0050 5 6 1.2840 3.8895 -0.0005 6 6 2.5565 4.4341 -0.0064 7 6 2.7419 5.9296 -0.0132 8 6 3.6571 3.5955 -0.0062 9 6 3.4398 2.2128 0.0007 10 6 4.5773 1.2735 0.0019 11 6 5.4538 1.2160 1.0902 12 6 6.5045 0.3183 1.0436 13 6 6.6654 -0.4989 -0.0706 14 7 5.8380 -0.4383 -1.0877 15 6 4.8035 0.4092 -1.1011 16 6 3.9389 0.4448 -2.2103 17 1 3.0655 1.0798 -2.1941 18 6 4.2109 -0.3436 -3.3362 19 7 5.1897 -1.2096 -3.3067 20 14 3.1748 -0.1573 -4.8794 21 1 3.8442 0.7822 -5.8145 22 1 3.0197 -1.4810 -5.5342 23 1 1.8370 0.3751 -4.5161 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.4266 4.5461 -0.0006 28 1 2.7832 6.2860 -1.0424 29 1 1.9051 6.4018 0.5016 30 1 3.6715 6.1828 0.4965 31 1 4.6593 3.9979 -0.0104 32 1 5.3131 1.8579 1.9472 33 1 7.1972 0.2513 1.8695 34 1 7.4860 -1.2007 -0.0975 35 1 5.3777 -1.7557 -4.0860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244879986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:21 Heat of formation + Delta-G solvation = 43.028886 kcal Electronic energy + Delta-G solvation = -19981.061887 eV Core-core repulsion = 17069.033195 eV Total energy + Delta-G solvation = -2912.028692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06049 -39.69848 -35.54972 -34.49999 -34.35594 -32.15658 -30.49839 -29.78664 -28.05544 -27.55670 -24.96420 -23.61337 -23.19633 -21.65579 -19.38956 -18.81823 -17.70070 -17.26797 -16.56681 -16.13863 -16.03181 -15.92307 -15.21954 -14.59744 -14.54693 -14.33974 -14.16232 -13.97826 -13.78719 -13.51858 -13.34464 -13.18318 -12.96821 -12.89887 -12.73754 -12.56510 -12.14597 -11.80051 -11.29556 -11.14216 -10.73832 -10.48237 -10.28640 -9.95320 -9.45309 -9.39461 -8.35254 -8.13426 -6.42203 0.09328 0.35295 0.82721 0.92513 1.15631 1.35301 1.47680 1.50307 1.58720 2.19384 2.79876 2.86627 3.72947 3.88494 4.03622 4.07142 4.19496 4.30935 4.36461 4.37230 4.39100 4.40757 4.73227 4.83377 4.89060 4.90933 4.96119 5.03975 5.19688 5.20840 5.27579 5.39392 5.53325 5.69492 5.82897 5.93119 6.18736 6.32680 6.72820 6.89637 7.02135 8.20085 8.41752 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.008258 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.842836 B = 3390.027214 C = 4055.331489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.081 6.081 3 C 0.095 3.905 4 N -0.500 5.500 5 C 0.085 3.915 6 C -0.137 4.137 7 C -0.098 4.098 8 C -0.081 4.081 9 C -0.027 4.027 10 C -0.246 4.246 11 C -0.037 4.037 12 C -0.315 4.315 13 C 0.113 3.887 14 N -0.518 5.518 15 C 0.253 3.747 16 C -0.416 4.416 17 H 0.076 0.924 18 C 0.032 3.968 19 N -0.743 5.743 20 Si 0.963 3.037 21 H -0.263 1.263 22 H -0.262 1.262 23 H -0.262 1.262 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.186 0.814 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 8.803 3.976 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.160 5.840 3 C -0.153 4.153 4 N -0.212 5.212 5 C -0.076 4.076 6 C -0.142 4.142 7 C -0.156 4.156 8 C -0.108 4.108 9 C -0.036 4.036 10 C -0.251 4.251 11 C -0.061 4.061 12 C -0.338 4.338 13 C -0.054 4.054 14 N -0.230 5.230 15 C 0.129 3.871 16 C -0.446 4.446 17 H 0.095 0.905 18 C -0.191 4.191 19 N -0.364 5.364 20 Si 0.784 3.216 21 H -0.188 1.188 22 H -0.186 1.186 23 H -0.186 1.186 24 H 0.131 0.869 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.203 0.797 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.534 6.649 3.108 9.827 hybrid contribution -0.123 1.544 0.106 1.552 sum -6.657 8.193 3.214 11.035 Atomic orbital electron populations 1.23422 0.94619 1.06438 1.05897 1.86697 1.06962 0.99541 1.90816 1.23251 0.91420 0.98246 1.02344 1.67846 1.33067 1.05028 1.15273 1.23091 0.97351 0.90346 0.96858 1.21107 0.93078 0.98941 1.01107 1.20725 1.03935 0.87572 1.03327 1.21757 1.00007 0.91306 0.97732 1.19294 0.91769 0.93896 0.98631 1.19330 1.00658 1.05803 0.99343 1.21152 0.92929 0.96269 0.95760 1.21481 1.04192 1.05860 1.02234 1.23031 0.96616 0.95797 0.89946 1.68697 1.05525 1.22605 1.26162 1.18715 0.90026 0.87176 0.91184 1.19585 1.06871 1.20253 0.97915 0.90549 1.26818 0.96006 0.93447 1.02837 1.70193 1.23201 1.13295 1.29710 0.85466 0.79345 0.79187 0.77573 1.18769 1.18603 1.18557 0.86857 0.89634 0.90338 0.79710 0.90237 0.89119 0.90785 0.84486 0.86442 0.85598 0.84501 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.65 113.37 1.09 -3.17 16 2 S -0.08 -3.46 19.45 -56.49 -1.10 -4.56 16 3 C 0.09 4.01 5.91 85.21 0.50 4.51 16 4 N -0.50 -18.51 9.13 -190.74 -1.74 -20.25 16 5 C 0.08 2.52 10.84 84.72 0.92 3.44 16 6 C -0.14 -3.95 5.89 -19.79 -0.12 -4.06 16 7 C -0.10 -1.82 10.03 71.23 0.71 -1.11 16 8 C -0.08 -2.90 9.57 22.72 0.22 -2.69 16 9 C -0.03 -1.16 4.53 -19.80 -0.09 -1.25 16 10 C -0.25 -11.88 4.69 -19.52 -0.09 -11.97 16 11 C -0.04 -1.62 9.89 22.67 0.22 -1.40 16 12 C -0.31 -13.66 10.10 22.49 0.23 -13.43 16 13 C 0.11 5.46 11.17 84.99 0.95 6.41 16 14 N -0.52 -28.72 7.87 -188.37 -1.48 -30.20 16 15 C 0.25 13.74 6.01 40.37 0.24 13.98 16 16 C -0.42 -22.40 7.26 23.32 0.17 -22.23 16 17 H 0.08 4.12 5.70 -2.91 -0.02 4.11 16 18 C 0.03 1.65 5.49 85.31 0.47 2.12 16 19 N -0.74 -39.85 11.48 21.85 0.25 -39.60 16 20 Si 0.96 39.30 29.57 68.60 2.03 41.32 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 25 H 0.08 2.53 8.12 -2.39 -0.02 2.51 16 26 H 0.08 2.50 8.13 -2.39 -0.02 2.48 16 27 H 0.19 3.92 8.06 -2.91 -0.02 3.89 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.24 8.09 -2.38 -0.02 1.22 16 30 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 31 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 32 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 34 H 0.14 5.81 8.06 -2.91 -0.02 5.78 16 35 H 0.28 13.58 8.29 -92.71 -0.77 12.82 16 Total: -1.00 -65.63 312.85 4.49 -61.14 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 1.10 Total: 23.00 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 5.43 Total: -30.86 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.97 Total: -90.06 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.32 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.10 Total: -4.56 kcal Total: -65.63 4.49 -61.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244879986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.173 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds