Wall clock time and date at job start Tue Mar 31 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76205 * 99.99771 * 2 1 4 4 N 1.32418 * 119.80098 * 0.02562 * 3 2 1 5 5 C 1.31919 * 121.74194 * 180.02562 * 4 3 2 6 6 C 1.38216 * 121.13826 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.26240 * 179.97438 * 6 5 4 8 8 C 1.38563 * 119.47335 * 0.27599 * 6 5 4 9 9 C 1.39533 * 118.40025 * 359.46186 * 8 6 5 10 10 C 1.48221 * 120.57864 * 180.23375 * 9 8 6 11 11 C 1.40104 * 120.83238 * 310.30540 * 10 9 8 12 12 C 1.38450 * 119.42106 * 179.97438 * 11 10 9 13 13 N 1.31507 * 121.15345 * 0.02562 * 12 11 10 14 14 C 1.33667 * 121.81077 * 359.97438 * 13 12 11 15 15 C 1.41432 * 119.77532 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99597 * 179.97438 * 15 14 13 17 17 C 1.40032 * 120.00458 * 0.02562 * 15 14 13 18 18 N 1.30743 * 119.99474 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00241 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47291 * 90.00048 * 19 17 15 21 21 H 1.48504 * 109.46670 * 209.99909 * 19 17 15 22 22 H 1.48501 * 109.46797 * 329.99709 * 19 17 15 23 23 C 1.39415 * 120.82146 * 130.02110 * 10 9 8 24 24 H 1.09003 * 109.46892 * 299.99680 * 1 2 3 25 25 H 1.08996 * 109.47450 * 59.99601 * 1 2 3 26 26 H 1.09003 * 109.46829 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.42863 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46953 * 90.00156 * 7 6 5 29 29 H 1.09000 * 109.47318 * 209.99754 * 7 6 5 30 30 H 1.09000 * 109.47161 * 330.00384 * 7 6 5 31 31 H 1.07997 * 120.80540 * 179.69696 * 8 6 5 32 32 H 1.08005 * 120.28997 * 359.97438 * 11 10 9 33 33 H 1.07994 * 119.42969 * 179.97438 * 12 11 10 34 34 H 0.97001 * 119.99469 * 180.02562 * 18 17 15 35 35 H 1.08001 * 120.59103 * 0.02694 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0986 2.5829 0.0005 5 6 1.2835 3.8891 0.0000 6 6 2.5550 4.4309 -0.0016 7 6 2.7434 5.9262 -0.0027 8 6 3.6551 3.5885 -0.0085 9 6 3.4358 2.2105 -0.0021 10 6 4.5775 1.2652 -0.0039 11 6 5.6225 1.4032 -0.9268 12 6 6.6749 0.5040 -0.9020 13 7 6.7106 -0.4776 -0.0275 14 6 5.7396 -0.6537 0.8740 15 6 5.8214 -1.7245 1.7943 16 1 5.0390 -1.8699 2.5246 17 6 6.9172 -2.5956 1.7595 18 7 7.8645 -2.4193 0.8758 19 14 7.0256 -4.0094 2.9755 20 1 6.3692 -5.2100 2.3985 21 1 8.4520 -4.3122 3.2566 22 1 6.3419 -3.6299 4.2379 23 6 4.6411 0.2202 0.9168 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.4265 4.5463 0.0001 28 1 2.7898 6.2872 1.0247 29 1 3.6713 6.1751 -0.5175 30 1 1.9052 6.3976 -0.5159 31 1 4.6582 3.9886 -0.0148 32 1 5.6072 2.2040 -1.6514 33 1 7.4803 0.6099 -1.6136 34 1 8.6234 -3.0230 0.8514 35 1 3.8573 0.0826 1.6470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244881092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:35 Heat of formation + Delta-G solvation = 56.254307 kcal Electronic energy + Delta-G solvation = -19268.801222 eV Core-core repulsion = 16357.346027 eV Total energy + Delta-G solvation = -2911.455195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93819 -38.01696 -33.92626 -33.52687 -32.78715 -30.03515 -29.12609 -28.70368 -27.19046 -25.71086 -23.63268 -22.70338 -21.20586 -20.40853 -17.83766 -17.25612 -16.38653 -15.62226 -14.98368 -14.68854 -14.50529 -14.27458 -13.92171 -13.56713 -13.35080 -13.28967 -12.85087 -12.67113 -12.58417 -12.30849 -12.17164 -12.07520 -11.49849 -11.20788 -11.13061 -10.81175 -10.50872 -10.06454 -9.98726 -9.64427 -9.44953 -9.34509 -9.23284 -8.04909 -7.66246 -7.59896 -7.00497 -6.41385 -4.52855 1.13315 1.42500 1.93305 2.56769 2.79100 2.90657 3.09389 3.12451 3.19342 3.91424 3.95063 4.71918 4.72661 4.93426 5.00994 5.16491 5.31820 5.40673 5.43392 5.53848 5.60463 5.82912 5.88782 5.94965 6.01961 6.06670 6.27409 6.39214 6.45092 6.71770 6.79369 6.86391 7.11236 7.29601 7.49294 7.63704 7.91231 7.99813 8.22268 8.63500 8.90099 10.09287 10.30637 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.005019 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.281545 B = 5577.535557 C = 6467.903570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 S -0.019 6.019 3 C 0.109 3.891 4 N -0.488 5.488 5 C 0.096 3.904 6 C -0.148 4.148 7 C -0.104 4.104 8 C -0.057 4.057 9 C -0.041 4.041 10 C -0.006 4.006 11 C -0.299 4.299 12 C 0.126 3.874 13 N -0.481 5.481 14 C 0.257 3.743 15 C -0.427 4.427 16 H 0.085 0.915 17 C 0.069 3.931 18 N -0.715 5.715 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.236 4.236 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.273 0.727 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 8.866 -1.149 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 S 0.222 5.778 3 C -0.139 4.139 4 N -0.200 5.200 5 C -0.064 4.064 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.085 4.085 9 C -0.049 4.049 10 C -0.014 4.014 11 C -0.323 4.323 12 C -0.040 4.040 13 N -0.193 5.193 14 C 0.132 3.868 15 C -0.458 4.458 16 H 0.103 0.897 17 C -0.156 4.156 18 N -0.336 5.336 19 Si 0.730 3.270 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.261 4.261 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.169 0.831 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.439 6.741 -1.197 10.867 hybrid contribution -0.695 1.531 0.415 1.732 sum -9.135 8.271 -0.783 12.348 Atomic orbital electron populations 1.23528 0.97993 1.05251 1.05969 1.86752 1.03529 0.96893 1.90662 1.23272 0.91023 0.99068 1.00539 1.67909 1.33201 1.03959 1.14931 1.22443 0.95873 0.90857 0.97257 1.20733 0.94106 0.97110 1.03412 1.20657 1.02595 0.90567 1.02290 1.21506 0.99116 0.91707 0.96123 1.19624 0.92558 0.93802 0.98939 1.18379 0.92095 0.94060 0.96818 1.21233 0.99271 1.06064 1.05688 1.22422 0.94934 0.90833 0.95793 1.68737 1.26836 1.18948 1.04827 1.18512 0.86648 0.91163 0.90471 1.19640 1.05098 1.07798 1.13276 0.89715 1.26064 0.95113 0.98628 0.95816 1.70137 1.05620 1.31104 1.26733 0.86347 0.78315 0.81100 0.81216 1.19344 1.20130 1.18494 1.21834 1.02059 0.98955 1.03208 0.89970 0.90149 0.88748 0.83147 0.91204 0.91438 0.91530 0.84491 0.88826 0.86264 0.91605 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.65 101.05 0.97 -1.21 16 2 S -0.02 -0.35 19.61 -107.50 -2.11 -2.46 16 3 C 0.11 2.05 6.97 -16.53 -0.12 1.93 16 4 N -0.49 -8.19 9.13 -11.80 -0.11 -8.30 16 5 C 0.10 1.35 10.84 -17.52 -0.19 1.16 16 6 C -0.15 -2.02 5.89 -104.51 -0.62 -2.64 16 7 C -0.10 -0.99 10.03 36.01 0.36 -0.62 16 8 C -0.06 -0.94 9.37 -38.98 -0.37 -1.30 16 9 C -0.04 -0.80 5.54 -104.55 -0.58 -1.38 16 10 C -0.01 -0.14 5.09 -104.66 -0.53 -0.67 16 11 C -0.30 -6.66 9.67 -38.80 -0.38 -7.03 16 12 C 0.13 3.01 11.17 -17.61 -0.20 2.82 16 13 N -0.48 -13.14 7.85 -11.22 -0.09 -13.23 16 14 C 0.26 6.95 6.55 -85.02 -0.56 6.39 16 15 C -0.43 -11.34 9.14 -37.69 -0.34 -11.69 16 16 H 0.08 2.12 7.85 -52.48 -0.41 1.70 16 17 C 0.07 1.75 5.50 -17.34 -0.10 1.65 16 18 N -0.71 -18.91 11.46 55.55 0.64 -18.27 16 19 Si 0.91 18.51 29.56 -169.99 -5.02 13.48 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 C -0.24 -5.77 7.96 -38.32 -0.30 -6.08 16 24 H 0.08 1.11 8.12 -51.91 -0.42 0.69 16 25 H 0.08 1.08 8.12 -51.92 -0.42 0.66 16 26 H 0.09 1.10 8.14 -51.91 -0.42 0.68 16 27 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 34 H 0.27 6.53 8.29 -40.82 -0.34 6.20 16 35 H 0.11 2.55 7.15 -52.49 -0.38 2.18 16 LS Contribution 316.51 15.07 4.77 4.77 Total: -1.00 -29.72 316.51 -9.00 -38.72 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.14 Total: 3.95 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -2.94 Total: -18.67 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.44 Total: -39.79 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.48 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.11 Total: -2.46 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.72 -9.00 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244881092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.978 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds