Wall clock time and date at job start Tue Mar 31 2020 06:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76205 * 99.99771 * 2 1 4 4 N 1.32418 * 119.80098 * 0.02562 * 3 2 1 5 5 C 1.31919 * 121.74194 * 180.02562 * 4 3 2 6 6 C 1.38216 * 121.13826 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.26240 * 179.97438 * 6 5 4 8 8 C 1.38563 * 119.47335 * 0.27599 * 6 5 4 9 9 C 1.39533 * 118.40025 * 359.46186 * 8 6 5 10 10 C 1.48221 * 120.57864 * 180.23375 * 9 8 6 11 11 C 1.40104 * 120.83238 * 310.30540 * 10 9 8 12 12 C 1.38450 * 119.42106 * 179.97438 * 11 10 9 13 13 N 1.31507 * 121.15345 * 0.02562 * 12 11 10 14 14 C 1.33667 * 121.81077 * 359.97438 * 13 12 11 15 15 C 1.41432 * 119.77532 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99597 * 179.97438 * 15 14 13 17 17 C 1.40032 * 120.00458 * 0.02562 * 15 14 13 18 18 N 1.30743 * 119.99474 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00241 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47291 * 90.00048 * 19 17 15 21 21 H 1.48504 * 109.46670 * 209.99909 * 19 17 15 22 22 H 1.48501 * 109.46797 * 329.99709 * 19 17 15 23 23 C 1.39415 * 120.82146 * 130.02110 * 10 9 8 24 24 H 1.09003 * 109.46892 * 299.99680 * 1 2 3 25 25 H 1.08996 * 109.47450 * 59.99601 * 1 2 3 26 26 H 1.09003 * 109.46829 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.42863 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46953 * 90.00156 * 7 6 5 29 29 H 1.09000 * 109.47318 * 209.99754 * 7 6 5 30 30 H 1.09000 * 109.47161 * 330.00384 * 7 6 5 31 31 H 1.07997 * 120.80540 * 179.69696 * 8 6 5 32 32 H 1.08005 * 120.28997 * 359.97438 * 11 10 9 33 33 H 1.07994 * 119.42969 * 179.97438 * 12 11 10 34 34 H 0.97001 * 119.99469 * 180.02562 * 18 17 15 35 35 H 1.08001 * 120.59103 * 0.02694 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0986 2.5829 0.0005 5 6 1.2835 3.8891 0.0000 6 6 2.5550 4.4309 -0.0016 7 6 2.7434 5.9262 -0.0027 8 6 3.6551 3.5885 -0.0085 9 6 3.4358 2.2105 -0.0021 10 6 4.5775 1.2652 -0.0039 11 6 5.6225 1.4032 -0.9268 12 6 6.6749 0.5040 -0.9020 13 7 6.7106 -0.4776 -0.0275 14 6 5.7396 -0.6537 0.8740 15 6 5.8214 -1.7245 1.7943 16 1 5.0390 -1.8699 2.5246 17 6 6.9172 -2.5956 1.7595 18 7 7.8645 -2.4193 0.8758 19 14 7.0256 -4.0094 2.9755 20 1 6.3692 -5.2100 2.3985 21 1 8.4520 -4.3122 3.2566 22 1 6.3419 -3.6299 4.2379 23 6 4.6411 0.2202 0.9168 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.4265 4.5463 0.0001 28 1 2.7898 6.2872 1.0247 29 1 3.6713 6.1751 -0.5175 30 1 1.9052 6.3976 -0.5159 31 1 4.6582 3.9886 -0.0148 32 1 5.6072 2.2040 -1.6514 33 1 7.4803 0.6099 -1.6136 34 1 8.6234 -3.0230 0.8514 35 1 3.8573 0.0826 1.6470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244881092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:34 Heat of formation + Delta-G solvation = 40.102462 kcal Electronic energy + Delta-G solvation = -19269.501618 eV Core-core repulsion = 16357.346027 eV Total energy + Delta-G solvation = -2912.155592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24287 -39.81840 -35.70911 -34.63316 -34.42546 -31.92926 -30.69857 -29.84275 -28.25534 -27.56475 -25.05805 -24.11360 -22.96590 -22.00815 -19.32336 -18.85830 -17.67974 -17.39566 -16.46311 -16.17911 -16.06882 -16.00019 -15.37063 -14.78034 -14.65647 -14.37967 -14.29914 -14.09090 -14.02090 -13.58145 -13.37446 -13.24845 -12.94479 -12.86011 -12.77497 -12.47140 -12.23861 -11.75962 -11.41318 -11.24923 -10.92888 -10.63704 -10.55973 -9.76389 -9.57228 -9.50703 -8.40538 -8.28776 -6.50484 -0.16947 0.15176 0.61160 0.89379 1.16406 1.41010 1.42071 1.53555 1.56273 2.23915 2.64425 2.85986 3.47675 3.80925 3.82672 3.96223 4.05205 4.17743 4.23954 4.34086 4.36360 4.38352 4.66522 4.83126 4.84346 4.88129 4.91091 4.94474 5.06820 5.16127 5.23569 5.28200 5.47536 5.57433 5.70540 5.82709 6.10959 6.27791 6.70539 6.73314 6.96155 8.18480 8.46088 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.005019 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.281545 B = 5577.535557 C = 6467.903570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.091 6.091 3 C 0.100 3.900 4 N -0.495 5.495 5 C 0.100 3.900 6 C -0.134 4.134 7 C -0.102 4.102 8 C -0.062 4.062 9 C -0.077 4.077 10 C 0.002 3.998 11 C -0.292 4.292 12 C 0.107 3.893 13 N -0.517 5.517 14 C 0.228 3.772 15 C -0.465 4.465 16 H 0.085 0.915 17 C 0.026 3.974 18 N -0.755 5.755 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.266 1.266 22 H -0.256 1.256 23 C -0.248 4.248 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.194 0.806 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.141 0.859 34 H 0.279 0.721 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 11.061 -1.098 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.149 5.851 3 C -0.147 4.147 4 N -0.207 5.207 5 C -0.060 4.060 6 C -0.139 4.139 7 C -0.159 4.159 8 C -0.089 4.089 9 C -0.085 4.085 10 C -0.005 4.005 11 C -0.315 4.315 12 C -0.057 4.057 13 N -0.230 5.230 14 C 0.104 3.896 15 C -0.497 4.497 16 H 0.104 0.896 17 C -0.195 4.195 18 N -0.377 5.377 19 Si 0.804 3.196 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.180 1.180 23 C -0.272 4.272 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.134 0.866 27 H 0.211 0.789 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.090 0.910 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.165 8.958 -1.161 13.599 hybrid contribution -0.331 1.129 0.299 1.214 sum -10.496 10.087 -0.862 14.583 Atomic orbital electron populations 1.23480 0.93599 1.06799 1.06332 1.86926 1.08385 0.98645 1.91143 1.23087 0.91158 0.98870 1.01601 1.67950 1.32460 1.05070 1.15192 1.23256 0.97660 0.90297 0.94836 1.21178 0.92922 0.99179 1.00581 1.20774 1.04211 0.87186 1.03690 1.21731 1.00737 0.90680 0.95761 1.19564 0.91856 0.94651 1.02476 1.18650 0.92876 0.93653 0.95312 1.21538 0.98454 1.05928 1.05590 1.22870 0.96275 0.90729 0.95804 1.68681 1.27762 1.20610 1.05973 1.18903 0.87587 0.92161 0.90995 1.19949 1.06342 1.09162 1.14227 0.89642 1.26952 0.94115 1.00957 0.97519 1.70228 1.06383 1.32554 1.28562 0.85182 0.78677 0.77210 0.78493 1.18723 1.19063 1.17979 1.21790 1.01454 0.99826 1.04118 0.89556 0.89589 0.86624 0.78933 0.89754 0.90655 0.88919 0.83575 0.86044 0.84144 0.91025 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.65 113.37 1.09 -2.44 16 2 S -0.09 -3.41 19.61 -56.49 -1.11 -4.52 16 3 C 0.10 3.71 6.97 85.10 0.59 4.31 16 4 N -0.49 -15.53 9.13 -191.26 -1.75 -17.28 16 5 C 0.10 2.43 10.84 84.67 0.92 3.35 16 6 C -0.13 -3.14 5.89 -19.79 -0.12 -3.26 16 7 C -0.10 -1.42 10.03 71.24 0.71 -0.71 16 8 C -0.06 -1.91 9.37 22.66 0.21 -1.69 16 9 C -0.08 -2.98 5.54 -19.81 -0.11 -3.09 16 10 C 0.00 0.11 5.09 -19.89 -0.10 0.01 16 11 C -0.29 -13.09 9.67 22.77 0.22 -12.87 16 12 C 0.11 5.28 11.17 84.79 0.95 6.22 16 13 N -0.52 -29.52 7.85 -189.40 -1.49 -31.00 16 14 C 0.23 13.04 6.55 40.19 0.26 13.30 16 15 C -0.47 -26.04 9.14 23.49 0.21 -25.83 16 16 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 17 C 0.03 1.37 5.50 85.29 0.47 1.83 16 18 N -0.76 -41.52 11.46 21.84 0.25 -41.27 16 19 Si 0.98 38.98 29.56 68.60 2.03 41.00 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 23 C -0.25 -12.73 7.96 23.09 0.18 -12.55 16 24 H 0.09 2.21 8.12 -2.39 -0.02 2.19 16 25 H 0.09 2.17 8.12 -2.40 -0.02 2.15 16 26 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 30 H 0.09 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.14 6.06 8.06 -2.91 -0.02 6.04 16 34 H 0.28 13.82 8.29 -92.71 -0.77 13.05 16 35 H 0.10 5.25 7.15 -2.91 -0.02 5.23 16 Total: -1.00 -68.53 316.51 4.54 -63.99 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 1.10 Total: 22.48 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 5.50 Total: -33.41 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.98 Total: -89.55 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.11 Total: -4.52 kcal Total: -68.53 4.54 -63.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244881092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.092 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds