Wall clock time and date at job start Tue Mar 31 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38162 * 120.06974 * 2 1 4 4 Cl 1.73609 * 119.95022 * 359.97438 * 3 2 1 5 5 C 1.38410 * 120.09685 * 180.27202 * 3 2 1 6 6 C 1.38325 * 120.23179 * 359.70171 * 5 3 2 7 7 C 1.38006 * 120.13215 * 0.02562 * 6 5 3 8 8 C 1.39296 * 120.07023 * 179.72447 * 2 1 3 9 9 C 1.48400 * 120.11278 * 0.02562 * 8 2 1 10 10 C 1.39357 * 120.12183 * 309.72654 * 9 8 2 11 11 C 1.37994 * 119.87701 * 180.02562 * 10 9 8 12 12 C 1.38339 * 120.11959 * 0.27937 * 11 10 9 13 13 C 1.38301 * 120.24624 * 359.44542 * 12 11 10 14 14 C 1.50698 * 119.93941 * 180.29920 * 13 12 11 15 15 C 1.50706 * 109.47303 * 270.24863 * 14 13 12 16 16 H 1.07999 * 119.99444 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99994 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47260 * 89.99812 * 19 17 15 21 21 H 1.48503 * 109.47257 * 210.00104 * 19 17 15 22 22 H 1.48503 * 109.47220 * 330.00081 * 19 17 15 23 23 C 1.38044 * 120.11819 * 0.55019 * 13 12 11 24 24 H 1.08998 * 109.47270 * 270.27785 * 1 2 3 25 25 H 1.09000 * 109.46761 * 30.28035 * 1 2 3 26 26 H 1.08999 * 109.46703 * 150.27644 * 1 2 3 27 27 H 1.08002 * 119.88787 * 179.72553 * 5 3 2 28 28 H 1.07997 * 119.93687 * 179.97438 * 6 5 3 29 29 H 1.07998 * 120.04844 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.06134 * 359.97438 * 10 9 8 31 31 H 1.08002 * 119.93588 * 179.97438 * 11 10 9 32 32 H 1.08007 * 119.87864 * 179.71690 * 12 11 10 33 33 H 1.08994 * 109.47495 * 30.25192 * 14 13 12 34 34 H 1.08998 * 109.47156 * 150.25479 * 14 13 12 35 35 H 0.96996 * 119.99700 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.06163 * 179.70104 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1957 0.0000 4 17 1.3317 2.6995 -0.0007 5 6 3.5834 1.1963 -0.0057 6 6 4.2804 0.0016 -0.0052 7 6 3.5986 -1.1983 0.0005 8 6 2.2049 -1.2055 0.0058 9 6 1.4671 -2.4930 0.0114 10 6 0.4506 -2.7125 0.9391 11 6 -0.2320 -3.9118 0.9401 12 6 0.0952 -4.8975 0.0263 13 6 1.0993 -4.6829 -0.9003 14 6 1.4454 -5.7589 -1.8970 15 6 2.5090 -6.6563 -1.3185 16 1 2.8953 -6.4666 -0.3279 17 6 2.9888 -7.7193 -2.0538 18 7 2.5187 -7.9500 -3.2601 19 14 4.3066 -8.8320 -1.3364 20 1 3.6637 -9.9511 -0.6020 21 1 5.1454 -9.3773 -2.4339 22 1 5.1586 -8.0523 -0.4029 23 6 1.7885 -3.4869 -0.9104 24 1 -0.3634 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 4.1211 2.1330 -0.0102 28 1 5.3603 0.0076 -0.0100 29 1 4.1441 -2.1303 0.0013 30 1 0.1980 -1.9456 1.6564 31 1 -1.0196 -4.0830 1.6589 32 1 -0.4385 -5.8365 0.0335 33 1 0.5555 -6.3474 -2.1202 34 1 1.8165 -5.2997 -2.8132 35 1 2.8560 -8.6981 -3.7772 36 1 2.5757 -3.3222 -1.6312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244963431.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:31 Heat of formation + Delta-G solvation = 19.809953 kcal Electronic energy + Delta-G solvation = -18991.437044 eV Core-core repulsion = 16044.065045 eV Total energy + Delta-G solvation = -2947.371998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93387 -38.23065 -36.51234 -33.85519 -32.91467 -31.90178 -31.10954 -28.94970 -27.10035 -26.88084 -23.37034 -23.30927 -21.62065 -21.09964 -19.83096 -16.86895 -16.33217 -15.87134 -15.78643 -15.33465 -14.65658 -14.58192 -14.11874 -13.96068 -13.49812 -13.00960 -12.66259 -12.63007 -12.44972 -12.23908 -11.92963 -11.58878 -11.56243 -11.39866 -11.30190 -11.00053 -10.90117 -10.73763 -10.52523 -10.30454 -9.59891 -9.51869 -9.02794 -8.68382 -8.46117 -8.09576 -7.78680 -6.08081 -4.12244 0.98261 1.15957 1.96021 2.04148 2.11182 3.27709 3.34267 3.37929 3.58265 4.32079 4.48153 4.64251 4.72326 4.97978 5.03614 5.26434 5.28856 5.40607 5.49026 5.58588 5.63026 5.67145 5.70893 5.89889 6.04518 6.11444 6.14265 6.20502 6.29012 6.48620 6.53981 6.69240 6.75815 6.99925 7.10481 7.12807 7.45294 7.63691 7.78571 7.87591 8.27082 8.92985 9.51910 11.01832 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.003768 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.075087 B = 7428.543940 C = 8095.621664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.067 4.067 3 C -0.037 4.037 4 Cl -0.076 7.076 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.099 4.099 8 C -0.018 4.018 9 C -0.063 4.063 10 C -0.129 4.129 11 C -0.124 4.124 12 C -0.116 4.116 13 C -0.033 4.033 14 C 0.047 3.953 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.103 4.103 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 17.530 7.313 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.068 4.068 3 C -0.064 4.064 4 Cl -0.047 7.047 5 C -0.134 4.134 6 C -0.131 4.131 7 C -0.117 4.117 8 C -0.019 4.019 9 C -0.063 4.063 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.134 4.134 13 C -0.033 4.033 14 C 0.010 3.990 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.121 4.121 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.817 17.549 7.155 19.038 hybrid contribution 0.779 -0.557 0.345 1.018 sum -1.038 16.992 7.499 18.602 Atomic orbital electron populations 1.20966 0.90259 1.03678 1.02717 1.19782 0.96768 0.90486 0.99735 1.20669 0.92285 0.86274 1.07153 1.98341 1.77147 1.32237 1.97024 1.21006 0.91803 0.99121 1.01465 1.21025 1.00122 0.91514 1.00425 1.21463 0.93347 0.98772 0.98127 1.18731 0.92783 0.91631 0.98724 1.18557 0.97296 0.92463 0.97951 1.20916 0.96917 0.97651 0.99265 1.20968 1.00070 0.93878 0.99310 1.21194 0.98151 0.98660 0.95422 1.20637 0.92014 0.94638 0.96036 1.18370 0.97306 0.90909 0.92387 1.21046 1.20930 1.11282 1.01833 0.92459 1.25007 0.96861 0.97554 0.94851 1.69954 1.43076 1.29851 1.10335 0.86542 0.81656 0.80829 0.78725 1.20565 1.21135 1.19796 1.21120 0.99813 0.92633 0.98577 0.90809 0.91256 0.90195 0.85260 0.85066 0.84820 0.86934 0.86792 0.86313 0.95231 0.95282 0.92799 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.05 36.01 0.29 -1.12 16 2 C -0.07 -0.89 5.88 -104.26 -0.61 -1.50 16 3 C -0.04 -0.46 6.31 -39.55 -0.25 -0.71 16 4 Cl -0.08 -0.83 27.29 -51.86 -1.42 -2.25 16 5 C -0.12 -1.28 9.82 -39.49 -0.39 -1.67 16 6 C -0.11 -1.27 10.03 -39.63 -0.40 -1.67 16 7 C -0.10 -1.33 9.51 -39.25 -0.37 -1.71 16 8 C -0.02 -0.27 5.47 -104.90 -0.57 -0.84 16 9 C -0.06 -1.03 4.71 -104.90 -0.49 -1.52 16 10 C -0.13 -1.97 7.91 -39.25 -0.31 -2.28 16 11 C -0.12 -1.96 10.03 -39.63 -0.40 -2.35 16 12 C -0.12 -2.17 9.69 -39.52 -0.38 -2.56 16 13 C -0.03 -0.70 5.07 -104.67 -0.53 -1.23 16 14 C 0.05 1.18 5.10 -29.03 -0.15 1.04 16 15 C -0.51 -14.07 9.09 -34.44 -0.31 -14.38 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 19 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.10 -1.97 9.16 -39.25 -0.36 -2.33 16 24 H 0.07 0.78 7.51 -51.93 -0.39 0.39 16 25 H 0.07 0.75 6.91 -51.93 -0.36 0.40 16 26 H 0.08 1.02 6.46 -51.93 -0.34 0.69 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.13 1.78 8.04 -52.49 -0.42 1.36 16 30 H 0.11 1.47 6.88 -52.49 -0.36 1.10 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 33 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.12 2.26 8.04 -52.48 -0.42 1.84 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -28.89 321.05 -10.56 -39.45 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.36 Total: 0.35 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: -5.34 Total: -33.29 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.74 Total: -25.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.42 Total: -2.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.89 -10.56 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244963431.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.261 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds