Wall clock time and date at job start Tue Mar 31 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38162 * 120.06974 * 2 1 4 4 Cl 1.73609 * 119.95022 * 359.97438 * 3 2 1 5 5 C 1.38410 * 120.09685 * 180.27202 * 3 2 1 6 6 C 1.38325 * 120.23179 * 359.70171 * 5 3 2 7 7 C 1.38006 * 120.13215 * 0.02562 * 6 5 3 8 8 C 1.39296 * 120.07023 * 179.72447 * 2 1 3 9 9 C 1.48400 * 120.11278 * 0.02562 * 8 2 1 10 10 C 1.39357 * 120.12183 * 309.72654 * 9 8 2 11 11 C 1.37994 * 119.87701 * 180.02562 * 10 9 8 12 12 C 1.38339 * 120.11959 * 0.27937 * 11 10 9 13 13 C 1.38301 * 120.24624 * 359.44542 * 12 11 10 14 14 C 1.50698 * 119.93941 * 180.29920 * 13 12 11 15 15 C 1.50706 * 109.47303 * 270.24863 * 14 13 12 16 16 H 1.07999 * 119.99444 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99994 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47260 * 89.99812 * 19 17 15 21 21 H 1.48503 * 109.47257 * 210.00104 * 19 17 15 22 22 H 1.48503 * 109.47220 * 330.00081 * 19 17 15 23 23 C 1.38044 * 120.11819 * 0.55019 * 13 12 11 24 24 H 1.08998 * 109.47270 * 270.27785 * 1 2 3 25 25 H 1.09000 * 109.46761 * 30.28035 * 1 2 3 26 26 H 1.08999 * 109.46703 * 150.27644 * 1 2 3 27 27 H 1.08002 * 119.88787 * 179.72553 * 5 3 2 28 28 H 1.07997 * 119.93687 * 179.97438 * 6 5 3 29 29 H 1.07998 * 120.04844 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.06134 * 359.97438 * 10 9 8 31 31 H 1.08002 * 119.93588 * 179.97438 * 11 10 9 32 32 H 1.08007 * 119.87864 * 179.71690 * 12 11 10 33 33 H 1.08994 * 109.47495 * 30.25192 * 14 13 12 34 34 H 1.08998 * 109.47156 * 150.25479 * 14 13 12 35 35 H 0.96996 * 119.99700 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.06163 * 179.70104 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1957 0.0000 4 17 1.3317 2.6995 -0.0007 5 6 3.5834 1.1963 -0.0057 6 6 4.2804 0.0016 -0.0052 7 6 3.5986 -1.1983 0.0005 8 6 2.2049 -1.2055 0.0058 9 6 1.4671 -2.4930 0.0114 10 6 0.4506 -2.7125 0.9391 11 6 -0.2320 -3.9118 0.9401 12 6 0.0952 -4.8975 0.0263 13 6 1.0993 -4.6829 -0.9003 14 6 1.4454 -5.7589 -1.8970 15 6 2.5090 -6.6563 -1.3185 16 1 2.8953 -6.4666 -0.3279 17 6 2.9888 -7.7193 -2.0538 18 7 2.5187 -7.9500 -3.2601 19 14 4.3066 -8.8320 -1.3364 20 1 3.6637 -9.9511 -0.6020 21 1 5.1454 -9.3773 -2.4339 22 1 5.1586 -8.0523 -0.4029 23 6 1.7885 -3.4869 -0.9104 24 1 -0.3634 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 4.1211 2.1330 -0.0102 28 1 5.3603 0.0076 -0.0100 29 1 4.1441 -2.1303 0.0013 30 1 0.1980 -1.9456 1.6564 31 1 -1.0196 -4.0830 1.6589 32 1 -0.4385 -5.8365 0.0335 33 1 0.5555 -6.3474 -2.1202 34 1 1.8165 -5.2997 -2.8132 35 1 2.8560 -8.6981 -3.7772 36 1 2.5757 -3.3222 -1.6312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244963431.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:30 Heat of formation + Delta-G solvation = 7.893439 kcal Electronic energy + Delta-G solvation = -18991.953782 eV Core-core repulsion = 16044.065045 eV Total energy + Delta-G solvation = -2947.888737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04308 -39.48999 -37.42068 -35.59341 -34.26104 -33.03272 -32.73239 -30.14584 -28.86380 -27.89719 -25.25812 -24.49342 -22.67026 -22.40212 -21.16756 -18.53587 -17.92828 -17.11829 -16.84294 -16.57149 -16.30092 -15.92007 -15.37840 -15.02306 -14.54722 -14.51095 -14.13179 -14.07970 -13.50627 -13.36754 -13.31392 -13.25042 -12.90596 -12.66362 -12.50631 -12.46536 -12.37652 -12.23841 -11.87786 -11.60041 -11.54544 -11.34236 -10.61980 -10.16395 -9.62311 -9.51183 -9.12940 -8.21430 -6.34932 -0.09586 0.20214 0.63485 0.74521 1.14559 1.39331 1.40064 1.51585 2.38576 2.59101 3.01667 3.09489 3.56702 3.81515 4.02658 4.05084 4.15275 4.19596 4.37300 4.39923 4.58802 4.63351 4.72000 4.74281 4.76103 4.81754 5.03528 5.20069 5.23135 5.25395 5.32221 5.34789 5.42932 5.44825 5.61370 5.69660 5.75887 5.82993 6.06667 6.10524 6.24397 6.77698 7.33852 8.88059 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.003768 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.075087 B = 7428.543940 C = 8095.621664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.072 4.072 3 C -0.046 4.046 4 Cl -0.063 7.063 5 C -0.108 4.108 6 C -0.108 4.108 7 C -0.113 4.113 8 C -0.043 4.043 9 C -0.051 4.051 10 C -0.119 4.119 11 C -0.111 4.111 12 C -0.132 4.132 13 C -0.063 4.063 14 C 0.056 3.944 15 C -0.528 4.528 16 H 0.055 0.945 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.965 3.035 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.265 1.265 23 C -0.119 4.119 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.156 0.844 28 H 0.159 0.841 29 H 0.125 0.875 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.115 0.885 33 H 0.004 0.996 34 H 0.000 1.000 35 H 0.266 0.734 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 19.528 9.533 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.073 4.073 4 Cl -0.034 7.034 5 C -0.126 4.126 6 C -0.126 4.126 7 C -0.131 4.131 8 C -0.043 4.043 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.129 4.129 12 C -0.150 4.150 13 C -0.063 4.063 14 C 0.020 3.980 15 C -0.566 4.566 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.789 3.211 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.190 1.190 23 C -0.137 4.137 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.174 0.826 28 H 0.176 0.824 29 H 0.143 0.857 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.133 0.867 33 H 0.023 0.977 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.359 19.559 9.380 21.734 hybrid contribution 0.615 -1.010 -0.338 1.230 sum -0.744 18.548 9.042 20.648 Atomic orbital electron populations 1.20985 0.89415 1.03425 1.03690 1.19894 0.97485 0.90352 0.99535 1.20810 0.92922 0.86523 1.06998 1.98347 1.76970 1.31182 1.96948 1.21361 0.91573 1.00107 0.99592 1.21308 1.01501 0.90649 0.99178 1.21551 0.93203 0.99550 0.98779 1.18688 0.93263 0.91211 1.01169 1.18707 0.97208 0.92478 0.96755 1.21307 0.95582 0.97996 0.98743 1.21301 1.00257 0.92822 0.98471 1.21230 0.97937 0.99741 0.96079 1.20304 0.94599 0.94517 0.96845 1.18098 0.95650 0.91703 0.92590 1.21361 1.21516 1.11934 1.01789 0.92720 1.25926 0.99163 0.99106 0.95138 1.70081 1.44571 1.30632 1.11720 0.85444 0.78733 0.78757 0.78132 1.19619 1.20494 1.18968 1.21010 0.99963 0.93091 0.99670 0.89137 0.90464 0.91485 0.82645 0.82373 0.85678 0.83727 0.83037 0.86670 0.97748 0.98184 0.92552 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.05 71.24 0.57 -1.96 16 2 C -0.07 -1.77 5.88 -19.63 -0.12 -1.88 16 3 C -0.05 -1.01 6.31 22.29 0.14 -0.87 16 4 Cl -0.06 -1.21 27.29 -2.72 -0.07 -1.28 16 5 C -0.11 -2.08 9.82 22.33 0.22 -1.86 16 6 C -0.11 -2.20 10.03 22.24 0.22 -1.97 16 7 C -0.11 -2.94 9.51 22.49 0.21 -2.73 16 8 C -0.04 -1.21 5.47 -20.04 -0.11 -1.32 16 9 C -0.05 -1.67 4.71 -20.04 -0.09 -1.76 16 10 C -0.12 -3.34 7.91 22.48 0.18 -3.17 16 11 C -0.11 -3.27 10.03 22.24 0.22 -3.05 16 12 C -0.13 -5.01 9.69 22.31 0.22 -4.79 16 13 C -0.06 -2.78 5.07 -19.90 -0.10 -2.88 16 14 C 0.06 3.06 5.10 29.10 0.15 3.20 16 15 C -0.53 -30.27 9.09 25.60 0.23 -30.03 16 16 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 17 C 0.00 0.28 5.46 84.65 0.46 0.74 16 18 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 19 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 C -0.12 -4.75 9.16 22.48 0.21 -4.54 16 24 H 0.09 1.60 7.51 -2.39 -0.02 1.59 16 25 H 0.08 1.51 6.91 -2.39 -0.02 1.49 16 26 H 0.07 1.60 6.46 -2.39 -0.02 1.59 16 27 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.13 3.39 8.04 -2.91 -0.02 3.37 16 30 H 0.15 3.19 6.88 -2.91 -0.02 3.17 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.00 0.24 8.09 -2.39 -0.02 0.22 16 34 H 0.00 -0.01 8.08 -2.39 -0.02 -0.03 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.11 4.33 8.04 -2.91 -0.02 4.31 16 Total: -1.00 -64.74 321.05 5.93 -58.81 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.08 Total: 11.04 kcal Atomic # 6 Polarization: -61.48 SS G_CDS: 2.62 Total: -58.86 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.28 Total: -55.93 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.07 Total: -1.28 kcal Total: -64.74 5.93 -58.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244963431.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.705 kcal (2) G-P(sol) polarization free energy of solvation -64.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds