Wall clock time and date at job start Tue Mar 31 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.36264 * 120.05950 * 2 1 4 4 C 1.39919 * 120.12058 * 180.02562 * 3 2 1 5 5 C 1.47988 * 119.88088 * 180.02562 * 4 3 2 6 6 C 1.39626 * 120.13741 * 309.72159 * 5 4 3 7 7 C 1.37921 * 119.88105 * 179.74349 * 6 5 4 8 8 C 1.38387 * 120.15915 * 0.53747 * 7 6 5 9 9 C 1.38488 * 120.27590 * 359.71536 * 8 7 6 10 10 Cl 1.73598 * 119.93967 * 180.02562 * 9 8 7 11 11 C 1.38074 * 120.11630 * 0.02584 * 9 8 7 12 12 C 1.50703 * 120.07934 * 179.97438 * 11 9 8 13 13 C 1.39951 * 120.23465 * 0.02562 * 4 3 2 14 14 C 1.36239 * 120.12326 * 359.96349 * 13 4 3 15 15 C 1.40914 * 120.05835 * 180.02562 * 2 1 3 16 16 C 1.41026 * 120.11630 * 359.70168 * 15 2 1 17 17 H 1.08000 * 119.99909 * 329.63516 * 16 15 2 18 18 C 1.40018 * 119.99845 * 149.64491 * 16 15 2 19 19 N 1.30793 * 120.00061 * 162.25684 * 18 16 15 20 20 Si 1.86799 * 119.99710 * 342.25176 * 18 16 15 21 21 H 1.48499 * 109.46908 * 95.39220 * 20 18 16 22 22 H 1.48500 * 109.47175 * 215.38891 * 20 18 16 23 23 H 1.48494 * 109.47328 * 335.39373 * 20 18 16 24 24 H 1.09003 * 109.46770 * 269.97660 * 1 2 3 25 25 H 1.09000 * 109.46718 * 29.97305 * 1 2 3 26 26 H 1.08997 * 109.46987 * 149.97759 * 1 2 3 27 27 H 1.08003 * 119.94053 * 0.04256 * 3 2 1 28 28 H 1.08005 * 120.05931 * 359.97438 * 6 5 4 29 29 H 1.07999 * 119.92490 * 180.25038 * 7 6 5 30 30 H 1.08003 * 119.86797 * 179.74206 * 8 7 6 31 31 H 1.08992 * 109.47609 * 269.98046 * 12 11 9 32 32 H 1.09000 * 109.47118 * 29.98093 * 12 11 9 33 33 H 1.09000 * 109.47204 * 149.97918 * 12 11 9 34 34 H 1.08005 * 119.93838 * 179.97438 * 13 4 3 35 35 H 1.08000 * 120.06023 * 180.02562 * 14 13 4 36 36 H 0.96996 * 119.99817 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1897 1.1794 0.0000 4 6 3.5889 1.1809 -0.0005 5 6 4.3248 2.4648 0.0000 6 6 4.0035 3.4574 -0.9279 7 6 4.6892 4.6540 -0.9192 8 6 5.7017 4.8685 -0.0006 9 6 6.0293 3.8866 0.9194 10 17 7.3004 4.1652 2.0684 11 6 5.3467 2.6864 0.9243 12 6 5.7043 1.6182 1.9254 13 6 4.2949 -0.0275 -0.0016 14 6 3.6223 -1.2123 -0.0014 15 6 2.2129 -1.2196 -0.0005 16 6 1.5115 -2.4431 0.0053 17 1 0.5450 -2.5091 0.4826 18 6 2.0684 -3.5722 -0.6076 19 7 1.6139 -4.7641 -0.3188 20 14 3.4602 -3.3761 -1.8379 21 1 4.7616 -3.5579 -1.1461 22 1 3.3220 -4.3959 -2.9085 23 1 3.4037 -2.0186 -2.4371 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6497 2.1147 0.0007 28 1 3.2169 3.2898 -1.6489 29 1 4.4386 5.4238 -1.6341 30 1 6.2383 5.8058 -0.0007 31 1 6.4729 0.9694 1.5057 32 1 6.0802 2.0847 2.8360 33 1 4.8183 1.0277 2.1589 34 1 5.3749 -0.0208 -0.0025 35 1 4.1682 -2.1442 -0.0018 36 1 1.9994 -5.5462 -0.7436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244964787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:22 Heat of formation + Delta-G solvation = 14.617066 kcal Electronic energy + Delta-G solvation = -19448.160914 eV Core-core repulsion = 16500.563735 eV Total energy + Delta-G solvation = -2947.597179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.48471 -37.87501 -36.28117 -33.99457 -32.92886 -31.68966 -31.21637 -29.28191 -27.01644 -26.07900 -24.84294 -22.37584 -21.22613 -20.98666 -19.43379 -17.53080 -16.55921 -15.64693 -15.41180 -15.06374 -14.35028 -14.11189 -13.80422 -13.73542 -13.18857 -12.88663 -12.70180 -12.47496 -12.26947 -12.10980 -11.80337 -11.53313 -11.50992 -11.43744 -11.12301 -11.03579 -10.88219 -10.61595 -10.53175 -10.21583 -9.84518 -9.61514 -9.29968 -8.53911 -8.41327 -7.72566 -7.37050 -7.10686 -4.58771 1.35980 1.46078 2.27703 2.50709 2.65168 3.03320 3.14239 3.23909 3.86844 3.88902 4.38684 5.01028 5.03582 5.23733 5.32025 5.43153 5.57647 5.83905 5.87527 5.92211 5.96809 6.05135 6.14871 6.21854 6.38549 6.45995 6.47936 6.54439 6.62391 6.64935 6.77436 6.81869 6.91545 7.04998 7.08504 7.40412 7.57349 7.66047 7.79833 8.00958 8.20746 8.53747 8.65523 9.89723 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.004574 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.827767 B = 6120.110356 C = 6579.850937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.184 4.184 3 C -0.053 4.053 4 C -0.203 4.203 5 C 0.022 3.978 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.135 4.135 9 C -0.031 4.031 10 Cl -0.084 7.084 11 C -0.083 4.083 12 C -0.116 4.116 13 C -0.051 4.051 14 C -0.240 4.240 15 C 0.101 3.899 16 C -0.431 4.431 17 H 0.096 0.904 18 C 0.084 3.916 19 N -0.797 5.797 20 Si 0.912 3.088 21 H -0.269 1.269 22 H -0.290 1.290 23 H -0.242 1.242 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 12.143 -0.230 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.185 4.185 3 C -0.071 4.071 4 C -0.204 4.204 5 C 0.022 3.978 6 C -0.138 4.138 7 C -0.131 4.131 8 C -0.154 4.154 9 C -0.058 4.058 10 Cl -0.056 7.056 11 C -0.083 4.083 12 C -0.172 4.172 13 C -0.069 4.069 14 C -0.259 4.259 15 C 0.098 3.902 16 C -0.459 4.459 17 H 0.114 0.886 18 C -0.137 4.137 19 N -0.420 5.420 20 Si 0.738 3.262 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.165 1.165 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.997 11.851 -0.125 13.282 hybrid contribution 0.797 -0.056 -0.427 0.906 sum 6.795 11.795 -0.552 13.623 Atomic orbital electron populations 1.20453 0.92880 1.00983 1.00221 1.19429 0.94802 0.92539 1.11763 1.20260 0.92377 0.96319 0.98153 1.17880 0.92449 0.90028 1.20011 1.18807 0.92928 0.93820 0.92261 1.21420 1.00397 0.93236 0.98730 1.20924 0.96056 0.97465 0.98627 1.20867 0.99618 0.98604 0.96313 1.20689 0.93911 0.96208 0.94964 1.98323 1.50965 1.96291 1.59991 1.19901 0.96412 0.94109 0.97910 1.20910 1.02778 0.96879 0.96678 1.20397 0.97454 0.91957 0.97077 1.20707 0.94590 0.96382 1.14251 1.17659 0.91254 0.92747 0.88554 1.19574 1.05420 0.91259 1.29611 0.88630 1.26260 0.96782 0.94202 0.96468 1.69673 1.38107 0.99350 1.34877 0.86292 0.80194 0.79972 0.79773 1.19498 1.21716 1.16531 0.93583 0.94045 0.91592 0.88693 0.85671 0.85810 0.85849 0.91275 0.91845 0.89916 0.88705 0.88094 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.40 36.01 0.34 -1.36 16 2 C -0.18 -4.02 5.90 -104.31 -0.62 -4.63 16 3 C -0.05 -1.06 9.08 -39.66 -0.36 -1.42 16 4 C -0.20 -4.01 4.75 -104.63 -0.50 -4.51 16 5 C 0.02 0.39 5.47 -104.89 -0.57 -0.19 16 6 C -0.12 -1.83 9.51 -39.18 -0.37 -2.20 16 7 C -0.11 -1.47 10.03 -39.64 -0.40 -1.87 16 8 C -0.14 -1.80 9.83 -39.43 -0.39 -2.18 16 9 C -0.03 -0.46 6.31 -39.55 -0.25 -0.71 16 10 Cl -0.08 -1.11 27.28 -51.86 -1.41 -2.53 16 11 C -0.08 -1.35 5.88 -104.19 -0.61 -1.96 16 12 C -0.12 -1.80 8.05 36.01 0.29 -1.51 16 13 C -0.05 -1.05 7.83 -39.66 -0.31 -1.36 16 14 C -0.24 -5.51 7.10 -39.28 -0.28 -5.79 16 15 C 0.10 2.42 5.09 -106.81 -0.54 1.88 16 16 C -0.43 -10.93 8.50 -37.86 -0.32 -11.26 16 17 H 0.10 2.52 7.23 -52.49 -0.38 2.14 16 18 C 0.08 2.08 5.40 -17.33 -0.09 1.98 16 19 N -0.80 -20.19 13.93 55.55 0.77 -19.41 16 20 Si 0.91 20.00 24.52 -169.99 -4.17 15.83 16 21 H -0.27 -5.76 6.72 56.52 0.38 -5.38 16 22 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.24 -5.49 6.86 56.52 0.39 -5.10 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.07 1.31 6.86 -51.93 -0.36 0.96 16 27 H 0.09 1.71 8.04 -52.48 -0.42 1.29 16 28 H 0.13 1.80 8.04 -52.48 -0.42 1.38 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.07 1.02 7.48 -51.93 -0.39 0.63 16 32 H 0.06 0.89 6.90 -51.93 -0.36 0.53 16 33 H 0.08 1.40 6.46 -51.93 -0.34 1.07 16 34 H 0.09 1.80 6.83 -52.48 -0.36 1.44 16 35 H 0.10 2.32 4.77 -52.49 -0.25 2.07 16 36 H 0.29 6.60 8.29 -40.82 -0.34 6.26 16 LS Contribution 307.78 15.07 4.64 4.64 Total: -1.00 -25.26 307.78 -9.29 -34.55 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.13 Total: 4.01 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: -4.99 Total: -37.09 kcal Atomic # 7 Polarization: -20.19 SS G_CDS: 0.77 Total: -19.41 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.17 Total: 15.83 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.41 Total: -2.53 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -25.26 -9.29 -34.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244964787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.166 kcal (2) G-P(sol) polarization free energy of solvation -25.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds