Wall clock time and date at job start Tue Mar 31 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.36264 * 120.05950 * 2 1 4 4 C 1.39919 * 120.12058 * 180.02562 * 3 2 1 5 5 C 1.47988 * 119.88088 * 180.02562 * 4 3 2 6 6 C 1.39626 * 120.13741 * 309.72159 * 5 4 3 7 7 C 1.37921 * 119.88105 * 179.74349 * 6 5 4 8 8 C 1.38387 * 120.15915 * 0.53747 * 7 6 5 9 9 C 1.38488 * 120.27590 * 359.71536 * 8 7 6 10 10 Cl 1.73598 * 119.93967 * 180.02562 * 9 8 7 11 11 C 1.38074 * 120.11630 * 0.02584 * 9 8 7 12 12 C 1.50703 * 120.07934 * 179.97438 * 11 9 8 13 13 C 1.39951 * 120.23465 * 0.02562 * 4 3 2 14 14 C 1.36239 * 120.12326 * 359.96349 * 13 4 3 15 15 C 1.40914 * 120.05835 * 180.02562 * 2 1 3 16 16 C 1.41026 * 120.11630 * 359.70168 * 15 2 1 17 17 H 1.08000 * 119.99909 * 329.63516 * 16 15 2 18 18 C 1.40018 * 119.99845 * 149.64491 * 16 15 2 19 19 N 1.30793 * 120.00061 * 162.25684 * 18 16 15 20 20 Si 1.86799 * 119.99710 * 342.25176 * 18 16 15 21 21 H 1.48499 * 109.46908 * 95.39220 * 20 18 16 22 22 H 1.48500 * 109.47175 * 215.38891 * 20 18 16 23 23 H 1.48494 * 109.47328 * 335.39373 * 20 18 16 24 24 H 1.09003 * 109.46770 * 269.97660 * 1 2 3 25 25 H 1.09000 * 109.46718 * 29.97305 * 1 2 3 26 26 H 1.08997 * 109.46987 * 149.97759 * 1 2 3 27 27 H 1.08003 * 119.94053 * 0.04256 * 3 2 1 28 28 H 1.08005 * 120.05931 * 359.97438 * 6 5 4 29 29 H 1.07999 * 119.92490 * 180.25038 * 7 6 5 30 30 H 1.08003 * 119.86797 * 179.74206 * 8 7 6 31 31 H 1.08992 * 109.47609 * 269.98046 * 12 11 9 32 32 H 1.09000 * 109.47118 * 29.98093 * 12 11 9 33 33 H 1.09000 * 109.47204 * 149.97918 * 12 11 9 34 34 H 1.08005 * 119.93838 * 179.97438 * 13 4 3 35 35 H 1.08000 * 120.06023 * 180.02562 * 14 13 4 36 36 H 0.96996 * 119.99817 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1897 1.1794 0.0000 4 6 3.5889 1.1809 -0.0005 5 6 4.3248 2.4648 0.0000 6 6 4.0035 3.4574 -0.9279 7 6 4.6892 4.6540 -0.9192 8 6 5.7017 4.8685 -0.0006 9 6 6.0293 3.8866 0.9194 10 17 7.3004 4.1652 2.0684 11 6 5.3467 2.6864 0.9243 12 6 5.7043 1.6182 1.9254 13 6 4.2949 -0.0275 -0.0016 14 6 3.6223 -1.2123 -0.0014 15 6 2.2129 -1.2196 -0.0005 16 6 1.5115 -2.4431 0.0053 17 1 0.5450 -2.5091 0.4826 18 6 2.0684 -3.5722 -0.6076 19 7 1.6139 -4.7641 -0.3188 20 14 3.4602 -3.3761 -1.8379 21 1 4.7616 -3.5579 -1.1461 22 1 3.3220 -4.3959 -2.9085 23 1 3.4037 -2.0186 -2.4371 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6497 2.1147 0.0007 28 1 3.2169 3.2898 -1.6489 29 1 4.4386 5.4238 -1.6341 30 1 6.2383 5.8058 -0.0007 31 1 6.4729 0.9694 1.5057 32 1 6.0802 2.0847 2.8360 33 1 4.8183 1.0277 2.1589 34 1 5.3749 -0.0208 -0.0025 35 1 4.1682 -2.1442 -0.0018 36 1 1.9994 -5.5462 -0.7436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244964787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:21 Heat of formation + Delta-G solvation = 4.697101 kcal Electronic energy + Delta-G solvation = -19448.591076 eV Core-core repulsion = 16500.563735 eV Total energy + Delta-G solvation = -2948.027341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81497 -39.40219 -37.37970 -35.68199 -34.35218 -33.04727 -32.84052 -30.73315 -28.40553 -27.52435 -26.43539 -23.87250 -22.53499 -22.46445 -20.95080 -19.32003 -17.86262 -17.23888 -16.69070 -16.29777 -15.94883 -15.63134 -15.38976 -15.02165 -14.61872 -14.38015 -14.27105 -13.96690 -13.64069 -13.37284 -13.25144 -13.09665 -12.92746 -12.80268 -12.69573 -12.37391 -12.26063 -12.12409 -11.86701 -11.73012 -11.48051 -11.32327 -11.03096 -9.90345 -9.54299 -9.38543 -8.99458 -8.92374 -6.44867 0.11054 0.30824 0.85672 0.93465 1.20139 1.26107 1.39767 1.47170 2.09921 2.51841 2.79894 3.47935 3.85217 3.91467 4.15614 4.19338 4.28132 4.31932 4.50346 4.59605 4.73367 4.75424 4.77397 4.81965 4.89602 4.99453 5.00741 5.12324 5.24625 5.27457 5.29201 5.34507 5.47203 5.59695 5.72634 5.77655 5.96668 6.02599 6.05397 6.25509 6.40309 6.74678 6.84717 8.14056 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.004574 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.827767 B = 6120.110356 C = 6579.850937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.193 4.193 3 C -0.060 4.060 4 C -0.174 4.174 5 C -0.012 4.012 6 C -0.120 4.120 7 C -0.104 4.104 8 C -0.122 4.122 9 C -0.042 4.042 10 Cl -0.072 7.072 11 C -0.091 4.091 12 C -0.114 4.114 13 C -0.061 4.061 14 C -0.251 4.251 15 C 0.079 3.921 16 C -0.466 4.466 17 H 0.067 0.933 18 C 0.052 3.948 19 N -0.842 5.842 20 Si 0.959 3.041 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.254 1.254 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.161 0.839 30 H 0.152 0.848 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 16.112 -0.990 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.194 4.194 3 C -0.078 4.078 4 C -0.175 4.175 5 C -0.012 4.012 6 C -0.138 4.138 7 C -0.122 4.122 8 C -0.141 4.141 9 C -0.069 4.069 10 Cl -0.043 7.043 11 C -0.092 4.092 12 C -0.170 4.170 13 C -0.079 4.079 14 C -0.270 4.270 15 C 0.076 3.924 16 C -0.495 4.495 17 H 0.085 0.915 18 C -0.164 4.164 19 N -0.467 5.467 20 Si 0.783 3.217 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.178 1.178 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.140 0.860 28 H 0.151 0.849 29 H 0.179 0.821 30 H 0.170 0.830 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.771 15.826 -0.880 17.653 hybrid contribution 0.392 -0.841 -0.113 0.934 sum 8.163 14.986 -0.993 17.093 Atomic orbital electron populations 1.20441 0.91400 1.01557 1.00772 1.19822 0.96274 0.92500 1.10824 1.20563 0.92795 0.96739 0.97674 1.18261 0.92661 0.91104 1.15502 1.18744 0.94402 0.93493 0.94601 1.21586 1.00645 0.93409 0.98172 1.21305 0.94887 0.97251 0.98726 1.21303 0.98923 0.99030 0.94837 1.20822 0.94270 0.96033 0.95755 1.98332 1.50255 1.96149 1.59573 1.19945 0.96373 0.94954 0.97926 1.20871 1.01988 0.96839 0.97343 1.20611 0.98452 0.91691 0.97115 1.20793 0.94394 0.97111 1.14733 1.17838 0.91906 0.93091 0.89531 1.19474 1.05079 0.92776 1.32206 0.91506 1.26775 0.98402 0.93840 0.97361 1.69699 1.40222 0.99928 1.36885 0.85575 0.78468 0.79270 0.78387 1.18795 1.20479 1.17796 0.92997 0.91089 0.93302 0.85971 0.84895 0.82148 0.82997 0.90867 0.90640 0.91974 0.86990 0.88766 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.26 9.40 71.24 0.67 -2.59 16 2 C -0.19 -8.43 5.90 -19.67 -0.12 -8.55 16 3 C -0.06 -2.30 9.08 22.22 0.20 -2.10 16 4 C -0.17 -6.60 4.75 -19.87 -0.09 -6.70 16 5 C -0.01 -0.39 5.47 -20.04 -0.11 -0.50 16 6 C -0.12 -3.18 9.51 22.53 0.21 -2.97 16 7 C -0.10 -2.16 10.03 22.23 0.22 -1.94 16 8 C -0.12 -2.63 9.83 22.36 0.22 -2.41 16 9 C -0.04 -1.09 6.31 22.29 0.14 -0.95 16 10 Cl -0.07 -1.66 27.28 -2.72 -0.07 -1.73 16 11 C -0.09 -2.72 5.88 -19.58 -0.12 -2.84 16 12 C -0.11 -3.34 8.05 71.24 0.57 -2.77 16 13 C -0.06 -2.48 7.83 22.22 0.17 -2.30 16 14 C -0.25 -11.70 7.10 22.47 0.16 -11.54 16 15 C 0.08 3.90 5.09 -21.28 -0.11 3.79 16 16 C -0.47 -25.12 8.50 23.39 0.20 -24.92 16 17 H 0.07 3.83 7.23 -2.91 -0.02 3.81 16 18 C 0.05 2.71 5.40 85.28 0.46 3.18 16 19 N -0.84 -45.03 13.93 21.84 0.30 -44.73 16 20 Si 0.96 42.42 24.52 68.60 1.68 44.10 16 21 H -0.26 -11.14 6.72 99.48 0.67 -10.47 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.25 -11.56 6.86 99.48 0.68 -10.87 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 26 H 0.05 2.02 6.86 -2.39 -0.02 2.01 16 27 H 0.12 4.02 8.04 -2.91 -0.02 4.00 16 28 H 0.13 3.29 8.04 -2.91 -0.02 3.26 16 29 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 31 H 0.07 2.05 7.48 -2.39 -0.02 2.03 16 32 H 0.07 1.98 6.90 -2.39 -0.02 1.96 16 33 H 0.06 2.06 6.46 -2.39 -0.02 2.05 16 34 H 0.11 4.12 6.83 -2.91 -0.02 4.10 16 35 H 0.09 4.44 4.77 -2.91 -0.01 4.42 16 36 H 0.29 14.18 8.29 -92.71 -0.77 13.41 16 Total: -1.00 -56.56 307.78 5.64 -50.92 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.03 Total: 17.53 kcal Atomic # 6 Polarization: -68.78 SS G_CDS: 2.69 Total: -66.09 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.30 Total: -44.73 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.68 Total: 44.10 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.07 Total: -1.73 kcal Total: -56.56 5.64 -50.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244964787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.616 kcal (2) G-P(sol) polarization free energy of solvation -56.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds