Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38012 * 120.05536 * 2 1 4 4 C 1.38420 * 120.10831 * 179.97438 * 3 2 1 5 5 Cl 1.73603 * 119.89001 * 180.02562 * 4 3 2 6 6 C 1.38460 * 120.21403 * 359.97438 * 4 3 2 7 7 C 1.37973 * 120.11269 * 359.74473 * 6 4 3 8 8 C 1.39328 * 120.05275 * 179.97438 * 2 1 3 9 9 C 1.48383 * 120.11033 * 359.97438 * 8 2 1 10 10 C 1.39365 * 120.12031 * 310.00501 * 9 8 2 11 11 C 1.37988 * 119.87748 * 180.02562 * 10 9 8 12 12 C 1.38341 * 120.12360 * 359.97438 * 11 10 9 13 13 C 1.38304 * 120.24520 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.94060 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47213 * 269.97303 * 14 13 12 16 16 H 1.08004 * 119.99735 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99897 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00085 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46745 * 89.99707 * 19 17 15 21 21 H 1.48498 * 109.46893 * 209.99724 * 19 17 15 22 22 H 1.48503 * 109.47119 * 329.99702 * 19 17 15 23 23 C 1.38037 * 120.11752 * 359.97438 * 13 12 11 24 24 H 1.09000 * 109.47058 * 270.02316 * 1 2 3 25 25 H 1.08996 * 109.46609 * 30.02395 * 1 2 3 26 26 H 1.08999 * 109.46783 * 150.01861 * 1 2 3 27 27 H 1.08002 * 119.94194 * 359.95589 * 3 2 1 28 28 H 1.08006 * 119.94125 * 180.02562 * 6 4 3 29 29 H 1.07998 * 120.05706 * 180.27527 * 7 6 4 30 30 H 1.08001 * 120.05856 * 359.74131 * 10 9 8 31 31 H 1.08000 * 119.94359 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.88218 * 179.97438 * 12 11 10 33 33 H 1.09002 * 109.47525 * 29.97961 * 14 13 12 34 34 H 1.08999 * 109.47191 * 149.97824 * 14 13 12 35 35 H 0.97003 * 120.00124 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.06363 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1946 0.0000 4 6 3.5825 1.1958 0.0005 5 17 4.4462 2.7017 0.0012 6 6 4.2804 0.0000 0.0016 7 6 3.5984 -1.1994 0.0075 8 6 2.2048 -1.2060 0.0005 9 6 1.4666 -2.4931 0.0017 10 6 0.4467 -2.7136 0.9256 11 6 -0.2362 -3.9126 0.9225 12 6 0.0895 -4.8947 0.0043 13 6 1.1006 -4.6814 -0.9149 14 6 1.4493 -5.7557 -1.9125 15 6 2.5103 -6.6549 -1.3321 16 1 2.8935 -6.4674 -0.3399 17 6 2.9910 -7.7175 -2.0674 18 7 3.9166 -8.5025 -1.5607 19 14 2.3277 -8.0423 -3.7833 20 1 3.1466 -7.3043 -4.7783 21 1 2.3915 -9.4976 -4.0713 22 1 0.9178 -7.5830 -3.8641 23 6 1.7903 -3.4857 -0.9208 24 1 -0.3633 0.0004 1.0277 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6582 2.1298 -0.0007 28 1 5.3604 0.0061 0.0024 29 1 4.1437 -2.1317 0.0128 30 1 0.1945 -1.9491 1.6456 31 1 -1.0269 -4.0845 1.6378 32 1 -0.4473 -5.8319 0.0056 33 1 0.5596 -6.3431 -2.1398 34 1 1.8237 -5.2950 -2.8266 35 1 4.2546 -9.2504 -2.0779 36 1 2.5800 -3.3201 -1.6387 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245084063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = 22.385962 kcal Electronic energy + Delta-G solvation = -18906.867614 eV Core-core repulsion = 15959.607320 eV Total energy + Delta-G solvation = -2947.260294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97394 -38.30641 -36.59082 -33.78079 -32.85037 -32.14793 -31.31408 -28.98427 -27.54016 -27.03064 -23.36112 -23.04927 -21.71012 -21.10316 -19.77377 -16.86901 -16.80845 -16.11046 -15.76162 -15.37443 -14.65788 -14.36819 -14.04631 -13.87994 -13.47428 -13.18170 -12.99918 -12.85289 -12.60705 -12.22926 -12.07617 -11.79710 -11.77798 -11.49543 -11.38721 -11.03839 -10.92003 -10.73516 -10.39112 -10.09423 -9.98891 -9.44137 -9.01541 -8.85928 -8.62568 -8.12990 -7.82357 -6.11655 -4.11305 0.87768 1.21837 1.92530 1.97753 2.01831 3.25519 3.33660 3.35777 3.54096 4.30232 4.37564 4.65684 4.75383 4.76609 5.07270 5.19751 5.23611 5.33853 5.41897 5.46598 5.58095 5.65183 5.76107 5.78170 5.96451 5.99161 6.08154 6.14686 6.16307 6.41967 6.51112 6.56969 6.71757 6.86937 6.93504 6.96376 7.01705 7.49434 7.50731 7.65662 8.44493 8.93167 9.48426 11.01187 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.003822 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.738143 B = 7324.176499 C = 8201.152264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.113 4.113 4 C -0.037 4.037 5 Cl -0.080 7.080 6 C -0.114 4.114 7 C -0.091 4.091 8 C -0.026 4.026 9 C -0.062 4.062 10 C -0.127 4.127 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.028 4.028 14 C 0.013 3.987 15 C -0.514 4.514 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.103 4.103 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.029 0.971 34 H 0.024 0.976 35 H 0.265 0.735 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 19.055 3.557 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.132 4.132 4 C -0.063 4.063 5 Cl -0.051 7.051 6 C -0.133 4.133 7 C -0.109 4.109 8 C -0.026 4.026 9 C -0.062 4.062 10 C -0.145 4.145 11 C -0.141 4.141 12 C -0.132 4.132 13 C -0.028 4.028 14 C -0.024 4.024 15 C -0.552 4.552 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.121 4.121 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.225 19.027 3.519 20.042 hybrid contribution 0.049 -0.198 -0.825 0.850 sum -5.175 18.828 2.694 19.711 Atomic orbital electron populations 1.20915 0.90430 1.03318 1.02548 1.19882 0.96396 0.91360 0.98909 1.20790 0.91813 0.98365 1.02227 1.20909 0.92377 0.86792 1.06220 1.98355 1.77139 1.32592 1.97050 1.20978 1.00455 0.90542 1.01316 1.21333 0.93340 0.98040 0.98167 1.18893 0.92846 0.92228 0.98655 1.18576 0.97147 0.92639 0.97826 1.20944 0.96757 0.97652 0.99116 1.20964 1.00152 0.93826 0.99153 1.21165 0.97998 0.98695 0.95363 1.20217 0.92421 0.94115 0.96071 1.18827 0.97656 0.92578 0.93300 1.20914 1.20079 1.10546 1.03687 0.90801 1.24992 0.94562 0.95609 0.98006 1.69897 1.28652 1.17270 1.37892 0.86818 0.80207 0.77550 0.85030 1.20128 1.21208 1.18918 1.21101 0.99613 0.92583 0.98758 0.90886 0.91709 0.90300 0.85129 0.84912 0.84380 0.86783 0.86638 0.86227 0.95315 0.95821 0.92552 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.45 36.01 0.30 -0.86 16 2 C -0.07 -0.79 5.87 -104.30 -0.61 -1.40 16 3 C -0.11 -1.28 9.47 -39.60 -0.37 -1.65 16 4 C -0.04 -0.43 6.32 -39.43 -0.25 -0.68 16 5 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.35 16 6 C -0.11 -1.38 9.81 -39.60 -0.39 -1.77 16 7 C -0.09 -1.23 9.52 -39.26 -0.37 -1.60 16 8 C -0.03 -0.37 5.47 -104.90 -0.57 -0.94 16 9 C -0.06 -0.97 4.72 -104.90 -0.49 -1.47 16 10 C -0.13 -1.84 7.90 -39.25 -0.31 -2.15 16 11 C -0.12 -1.86 10.03 -39.63 -0.40 -2.25 16 12 C -0.11 -2.05 9.69 -39.52 -0.38 -2.43 16 13 C -0.03 -0.57 5.06 -104.67 -0.53 -1.10 16 14 C 0.01 0.31 4.17 -29.04 -0.12 0.19 16 15 C -0.51 -14.27 9.65 -34.44 -0.33 -14.60 16 16 H 0.07 2.25 7.98 -52.48 -0.42 1.83 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 19 Si 0.88 21.01 27.47 -169.99 -4.67 16.35 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 23 C -0.10 -1.88 9.17 -39.25 -0.36 -2.24 16 24 H 0.07 0.64 7.50 -51.93 -0.39 0.25 16 25 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.08 0.89 6.46 -51.93 -0.34 0.55 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.14 1.88 8.05 -52.49 -0.42 1.46 16 30 H 0.11 1.39 6.86 -52.49 -0.36 1.03 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 34 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.12 2.18 8.05 -52.49 -0.42 1.75 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -29.61 320.09 -10.26 -39.87 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.39 Total: 0.76 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: -5.30 Total: -33.07 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.77 Total: -26.37 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.61 -10.26 -39.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245084063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.253 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds