Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38012 * 120.05536 * 2 1 4 4 C 1.38420 * 120.10831 * 179.97438 * 3 2 1 5 5 Cl 1.73603 * 119.89001 * 180.02562 * 4 3 2 6 6 C 1.38460 * 120.21403 * 359.97438 * 4 3 2 7 7 C 1.37973 * 120.11269 * 359.74473 * 6 4 3 8 8 C 1.39328 * 120.05275 * 179.97438 * 2 1 3 9 9 C 1.48383 * 120.11033 * 359.97438 * 8 2 1 10 10 C 1.39365 * 120.12031 * 310.00501 * 9 8 2 11 11 C 1.37988 * 119.87748 * 180.02562 * 10 9 8 12 12 C 1.38341 * 120.12360 * 359.97438 * 11 10 9 13 13 C 1.38304 * 120.24520 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.94060 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47213 * 269.97303 * 14 13 12 16 16 H 1.08004 * 119.99735 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99897 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00085 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46745 * 89.99707 * 19 17 15 21 21 H 1.48498 * 109.46893 * 209.99724 * 19 17 15 22 22 H 1.48503 * 109.47119 * 329.99702 * 19 17 15 23 23 C 1.38037 * 120.11752 * 359.97438 * 13 12 11 24 24 H 1.09000 * 109.47058 * 270.02316 * 1 2 3 25 25 H 1.08996 * 109.46609 * 30.02395 * 1 2 3 26 26 H 1.08999 * 109.46783 * 150.01861 * 1 2 3 27 27 H 1.08002 * 119.94194 * 359.95589 * 3 2 1 28 28 H 1.08006 * 119.94125 * 180.02562 * 6 4 3 29 29 H 1.07998 * 120.05706 * 180.27527 * 7 6 4 30 30 H 1.08001 * 120.05856 * 359.74131 * 10 9 8 31 31 H 1.08000 * 119.94359 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.88218 * 179.97438 * 12 11 10 33 33 H 1.09002 * 109.47525 * 29.97961 * 14 13 12 34 34 H 1.08999 * 109.47191 * 149.97824 * 14 13 12 35 35 H 0.97003 * 120.00124 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.06363 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1946 0.0000 4 6 3.5825 1.1958 0.0005 5 17 4.4462 2.7017 0.0012 6 6 4.2804 0.0000 0.0016 7 6 3.5984 -1.1994 0.0075 8 6 2.2048 -1.2060 0.0005 9 6 1.4666 -2.4931 0.0017 10 6 0.4467 -2.7136 0.9256 11 6 -0.2362 -3.9126 0.9225 12 6 0.0895 -4.8947 0.0043 13 6 1.1006 -4.6814 -0.9149 14 6 1.4493 -5.7557 -1.9125 15 6 2.5103 -6.6549 -1.3321 16 1 2.8935 -6.4674 -0.3399 17 6 2.9910 -7.7175 -2.0674 18 7 3.9166 -8.5025 -1.5607 19 14 2.3277 -8.0423 -3.7833 20 1 3.1466 -7.3043 -4.7783 21 1 2.3915 -9.4976 -4.0713 22 1 0.9178 -7.5830 -3.8641 23 6 1.7903 -3.4857 -0.9208 24 1 -0.3633 0.0004 1.0277 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6582 2.1298 -0.0007 28 1 5.3604 0.0061 0.0024 29 1 4.1437 -2.1317 0.0128 30 1 0.1945 -1.9491 1.6456 31 1 -1.0269 -4.0845 1.6378 32 1 -0.4473 -5.8319 0.0056 33 1 0.5596 -6.3431 -2.1398 34 1 1.8237 -5.2950 -2.8266 35 1 4.2546 -9.2504 -2.0779 36 1 2.5800 -3.3201 -1.6387 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245084063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = 9.148812 kcal Electronic energy + Delta-G solvation = -18907.441620 eV Core-core repulsion = 15959.607320 eV Total energy + Delta-G solvation = -2947.834300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.05094 -39.50828 -37.50067 -35.51268 -34.11701 -33.34558 -32.85832 -30.18793 -29.20265 -27.92824 -24.87849 -24.46724 -22.72032 -22.38131 -21.09666 -18.98511 -17.92114 -17.27391 -16.78175 -16.56205 -16.23444 -15.93036 -15.28308 -14.89346 -14.72525 -14.51498 -14.12429 -14.10410 -13.78230 -13.55431 -13.45251 -13.32806 -12.99966 -12.70293 -12.41921 -12.38934 -12.20753 -11.94513 -11.83172 -11.71089 -11.67099 -11.44030 -10.80410 -10.08346 -9.83475 -9.47942 -9.06060 -8.31358 -6.36538 -0.17514 0.27707 0.62831 0.70749 1.11111 1.35450 1.36772 1.48720 2.33850 2.54705 2.98844 3.03042 3.61587 3.79302 3.85553 4.11362 4.14350 4.21870 4.34284 4.36480 4.51612 4.62705 4.71403 4.78687 4.84289 4.88170 4.93689 5.02543 5.15515 5.19504 5.24911 5.28853 5.34677 5.48772 5.55589 5.61633 5.72488 5.80513 5.99622 6.15612 6.27658 6.69702 7.27110 8.85170 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.003822 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.738143 B = 7324.176499 C = 8201.152264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.061 4.061 3 C -0.110 4.110 4 C -0.038 4.038 5 Cl -0.068 7.068 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.048 4.048 9 C -0.054 4.054 10 C -0.116 4.116 11 C -0.113 4.113 12 C -0.131 4.131 13 C -0.062 4.062 14 C 0.020 3.980 15 C -0.519 4.519 16 H 0.028 0.972 17 C 0.009 3.991 18 N -0.949 5.949 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.245 1.245 23 C -0.121 4.121 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.157 0.843 28 H 0.145 0.855 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.119 0.881 33 H 0.033 0.967 34 H 0.025 0.975 35 H 0.268 0.732 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 21.628 3.561 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.062 4.062 3 C -0.129 4.129 4 C -0.065 4.065 5 Cl -0.039 7.039 6 C -0.137 4.137 7 C -0.123 4.123 8 C -0.049 4.049 9 C -0.054 4.054 10 C -0.134 4.134 11 C -0.131 4.131 12 C -0.149 4.149 13 C -0.062 4.062 14 C -0.017 4.017 15 C -0.557 4.557 16 H 0.046 0.954 17 C -0.188 4.188 18 N -0.589 5.589 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.168 1.168 23 C -0.139 4.139 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.174 0.826 28 H 0.162 0.838 29 H 0.142 0.858 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.137 0.863 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.226 21.619 3.529 23.066 hybrid contribution 0.733 -0.847 -0.696 1.319 sum -6.493 20.772 2.833 21.947 Atomic orbital electron populations 1.20978 0.88680 1.03724 1.03821 1.20107 0.97624 0.90676 0.97747 1.21073 0.91648 0.99085 1.01060 1.21056 0.92914 0.87073 1.05431 1.98362 1.76980 1.31619 1.96936 1.21088 1.01152 0.90304 1.01187 1.21310 0.93582 0.98221 0.99194 1.18903 0.92944 0.92258 1.00746 1.18739 0.97168 0.92662 0.96860 1.21336 0.95410 0.98057 0.98565 1.21319 1.00435 0.92920 0.98411 1.21280 0.97909 0.99773 0.95967 1.20062 0.94744 0.94207 0.97148 1.18661 0.96084 0.92860 0.94125 1.21149 1.21067 1.11530 1.01985 0.95402 1.25968 0.94766 0.95259 1.02850 1.70055 1.30542 1.18256 1.40041 0.85675 0.80527 0.77566 0.79043 1.19167 1.20731 1.16824 1.21074 0.99728 0.93201 0.99908 0.89025 0.89622 0.91628 0.82580 0.83766 0.85774 0.83490 0.83040 0.86267 0.94920 0.95625 0.92342 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 8.45 71.24 0.60 -1.31 16 2 C -0.06 -1.33 5.87 -19.65 -0.12 -1.44 16 3 C -0.11 -2.15 9.47 22.26 0.21 -1.94 16 4 C -0.04 -0.82 6.32 22.37 0.14 -0.68 16 5 Cl -0.07 -1.29 28.95 -2.72 -0.08 -1.37 16 6 C -0.12 -2.78 9.81 22.26 0.22 -2.56 16 7 C -0.10 -2.86 9.52 22.48 0.21 -2.65 16 8 C -0.05 -1.31 5.47 -20.04 -0.11 -1.42 16 9 C -0.05 -1.68 4.72 -20.04 -0.09 -1.77 16 10 C -0.12 -3.09 7.90 22.48 0.18 -2.91 16 11 C -0.11 -3.17 10.03 22.24 0.22 -2.95 16 12 C -0.13 -4.71 9.69 22.31 0.22 -4.49 16 13 C -0.06 -2.56 5.06 -19.90 -0.10 -2.66 16 14 C 0.02 0.95 4.17 29.10 0.12 1.07 16 15 C -0.52 -30.23 9.65 25.60 0.25 -29.98 16 16 H 0.03 1.81 7.98 -2.91 -0.02 1.79 16 17 C 0.01 0.51 5.47 84.65 0.46 0.97 16 18 N -0.95 -59.59 13.96 21.44 0.30 -59.29 16 19 Si 0.95 43.92 27.47 68.60 1.88 45.81 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 23 C -0.12 -4.59 9.17 22.48 0.21 -4.38 16 24 H 0.09 1.19 7.50 -2.39 -0.02 1.17 16 25 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.06 1.29 6.46 -2.39 -0.02 1.27 16 27 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 29 H 0.12 3.62 8.05 -2.91 -0.02 3.60 16 30 H 0.15 2.96 6.86 -2.91 -0.02 2.94 16 31 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.03 1.51 7.14 -2.39 -0.02 1.49 16 34 H 0.03 1.19 7.51 -2.39 -0.02 1.17 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.11 4.18 8.05 -2.91 -0.02 4.16 16 Total: -1.00 -66.89 320.09 5.75 -61.14 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.02 Total: 12.81 kcal Atomic # 6 Polarization: -61.72 SS G_CDS: 2.62 Total: -59.10 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.30 Total: -59.29 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.81 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -66.89 5.75 -61.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245084063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.287 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds