Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38011 * 120.05449 * 2 1 4 4 C 1.38423 * 120.10751 * 180.29949 * 3 2 1 5 5 Cl 1.73599 * 119.89034 * 179.69758 * 4 3 2 6 6 C 1.38466 * 120.21472 * 359.67482 * 4 3 2 7 7 C 1.37975 * 120.10635 * 0.02562 * 6 4 3 8 8 C 1.39327 * 120.05217 * 179.69539 * 2 1 3 9 9 C 1.48383 * 120.10768 * 0.02562 * 8 2 1 10 10 C 1.39345 * 120.11983 * 129.72650 * 9 8 2 11 11 C 1.38011 * 119.87671 * 179.97438 * 10 9 8 12 12 C 1.38319 * 120.12383 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.88084 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47229 * 270.00212 * 13 12 11 15 15 H 1.08002 * 119.99615 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00110 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99827 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47575 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47186 * 120.00258 * 18 16 14 21 21 H 1.48503 * 109.47277 * 239.99845 * 18 16 14 22 22 C 1.38324 * 120.24548 * 0.02562 * 12 11 10 23 23 C 1.38023 * 120.11626 * 359.97438 * 22 12 11 24 24 H 1.09005 * 109.47304 * 270.30016 * 1 2 3 25 25 H 1.09002 * 109.47312 * 30.30389 * 1 2 3 26 26 H 1.09006 * 109.46977 * 150.30083 * 1 2 3 27 27 H 1.07999 * 119.94897 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.94558 * 180.02562 * 6 4 3 29 29 H 1.08003 * 120.05021 * 180.02562 * 7 6 4 30 30 H 1.08001 * 120.05868 * 359.69662 * 10 9 8 31 31 H 1.08000 * 119.93783 * 179.97438 * 11 10 9 32 32 H 1.09002 * 109.47199 * 30.00290 * 13 12 11 33 33 H 1.09000 * 109.47456 * 150.00562 * 13 12 11 34 34 H 0.97000 * 119.99980 * 179.97438 * 17 16 14 35 35 H 1.07993 * 119.94430 * 179.97438 * 22 12 11 36 36 H 1.08001 * 120.05728 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1946 0.0000 4 6 3.5824 1.1958 -0.0063 5 17 4.4461 2.7017 -0.0142 6 6 4.2804 -0.0001 -0.0058 7 6 3.5984 -1.1994 0.0005 8 6 2.2048 -1.2060 0.0064 9 6 1.4664 -2.4930 0.0127 10 6 1.7871 -3.4876 -0.9091 11 6 1.0975 -4.6830 -0.8985 12 6 0.0901 -4.8951 0.0253 13 6 -0.6590 -6.2027 0.0324 14 6 -1.8572 -6.1003 -0.8760 15 1 -2.0560 -5.1804 -1.4058 16 6 -2.6988 -7.1812 -1.0315 17 7 -2.4564 -8.3014 -0.3867 18 14 -4.1835 -7.0544 -2.1580 19 1 -4.2322 -5.6987 -2.7622 20 1 -4.0765 -8.0719 -3.2343 21 1 -5.4218 -7.2920 -1.3736 22 6 -0.2324 -3.9113 0.9427 23 6 0.4508 -2.7120 0.9410 24 1 -0.3634 0.0054 1.0277 25 1 -0.3634 0.8872 -0.5185 26 1 -0.3633 -0.8927 -0.5092 27 1 1.6583 2.1299 -0.0004 28 1 5.3603 0.0060 -0.0102 29 1 4.1437 -2.1317 0.0013 30 1 2.5707 -3.3215 -1.6335 31 1 1.3449 -5.4544 -1.6128 32 1 -0.0032 -6.9990 -0.3196 33 1 -0.9901 -6.4263 1.0465 34 1 -3.0487 -9.0618 -0.4958 35 1 -1.0201 -4.0819 1.6615 36 1 0.1985 -1.9447 1.6580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245084076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = 17.861735 kcal Electronic energy + Delta-G solvation = -18716.497755 eV Core-core repulsion = 15769.041275 eV Total energy + Delta-G solvation = -2947.456480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.97732 -38.26822 -36.63539 -33.82495 -32.91886 -32.10944 -30.34946 -29.88443 -27.41185 -26.48200 -23.71456 -22.53924 -21.77843 -21.30473 -20.06289 -17.09047 -16.37869 -16.00020 -15.81140 -15.05367 -14.60075 -14.33729 -14.26656 -13.85990 -13.41440 -13.05111 -13.02537 -12.79282 -12.64791 -12.39733 -11.84926 -11.79433 -11.59057 -11.37822 -11.25738 -11.01789 -10.90094 -10.77717 -10.53705 -10.29380 -9.62843 -9.50326 -9.01546 -8.76311 -8.48037 -8.38164 -7.64368 -6.09394 -4.13639 0.86238 1.16325 1.96666 1.97756 2.02444 3.26024 3.33976 3.38595 3.50227 4.29983 4.46385 4.65583 4.71007 4.73505 5.05405 5.21227 5.25180 5.34618 5.44189 5.45487 5.62583 5.67359 5.74020 5.90588 6.00999 6.04145 6.08409 6.14483 6.18859 6.46149 6.55249 6.58791 6.73022 6.99108 7.09701 7.10286 7.43842 7.62209 7.77373 7.86317 8.25398 8.91886 9.50650 11.00438 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.037141 B = 0.003034 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.701442 B = 9226.564383 C = 9562.712182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.111 4.111 4 C -0.039 4.039 5 Cl -0.081 7.081 6 C -0.116 4.116 7 C -0.097 4.097 8 C -0.019 4.019 9 C -0.093 4.093 10 C -0.102 4.102 11 C -0.125 4.125 12 C -0.022 4.022 13 C 0.044 3.956 14 C -0.512 4.512 15 H 0.058 0.942 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.126 4.126 23 C -0.101 4.101 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.121 0.879 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.257 17.529 1.613 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.064 4.064 3 C -0.130 4.130 4 C -0.066 4.066 5 Cl -0.052 7.052 6 C -0.134 4.134 7 C -0.115 4.115 8 C -0.020 4.020 9 C -0.093 4.093 10 C -0.120 4.120 11 C -0.143 4.143 12 C -0.022 4.022 13 C 0.008 3.992 14 C -0.550 4.550 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.144 4.144 23 C -0.119 4.119 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.139 0.861 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.262 17.489 1.635 20.866 hybrid contribution -0.700 0.130 -0.629 0.950 sum 10.562 17.619 1.006 20.567 Atomic orbital electron populations 1.20945 0.90248 1.03564 1.02740 1.19940 0.96554 0.91372 0.98581 1.20827 0.91814 0.98476 1.01846 1.20895 0.92386 0.86777 1.06511 1.98355 1.77111 1.32641 1.97067 1.20932 1.00240 0.90626 1.01631 1.21217 0.93308 0.97664 0.99358 1.18897 0.92699 0.92375 0.97981 1.18409 0.98816 0.92819 0.99276 1.21058 0.99693 0.93209 0.98089 1.21036 0.96847 0.96976 0.99483 1.20808 0.92290 0.97805 0.91301 1.18412 0.94456 0.88124 0.98243 1.21073 1.08645 0.98731 1.26548 0.92386 1.25014 0.98039 0.95281 0.96001 1.69962 1.38154 1.02879 1.42238 0.86478 0.82495 0.78208 0.80541 1.19637 1.20915 1.20904 1.21043 1.00034 0.93210 1.00118 1.21088 0.95441 0.97277 0.98084 0.90762 0.91661 0.90050 0.85098 0.85110 0.84878 0.86900 0.86158 0.95222 0.95212 0.92836 0.86148 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.46 36.01 0.30 -1.01 16 2 C -0.06 -0.78 5.87 -104.30 -0.61 -1.39 16 3 C -0.11 -1.22 9.47 -39.60 -0.38 -1.60 16 4 C -0.04 -0.43 6.32 -39.43 -0.25 -0.68 16 5 Cl -0.08 -0.80 28.95 -51.86 -1.50 -2.30 16 6 C -0.12 -1.23 9.81 -39.59 -0.39 -1.62 16 7 C -0.10 -1.14 9.51 -39.26 -0.37 -1.51 16 8 C -0.02 -0.26 5.47 -104.90 -0.57 -0.83 16 9 C -0.09 -1.41 4.71 -104.90 -0.49 -1.90 16 10 C -0.10 -1.63 9.51 -39.25 -0.37 -2.00 16 11 C -0.13 -2.33 9.68 -39.63 -0.38 -2.71 16 12 C -0.02 -0.46 5.07 -104.56 -0.53 -0.99 16 13 C 0.04 1.11 5.10 -29.03 -0.15 0.96 16 14 C -0.51 -13.97 9.09 -34.44 -0.31 -14.29 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 C -0.13 -2.32 9.68 -39.63 -0.38 -2.70 16 23 C -0.10 -1.58 7.92 -39.25 -0.31 -1.89 16 24 H 0.07 0.75 7.51 -51.93 -0.39 0.36 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.08 1.05 6.46 -51.93 -0.34 0.72 16 27 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.13 1.39 8.04 -52.48 -0.42 0.97 16 30 H 0.11 1.54 8.04 -52.49 -0.42 1.11 16 31 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 32 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 35 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.11 1.53 6.88 -52.49 -0.36 1.17 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -28.65 323.72 -10.63 -39.28 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.42 Total: -0.14 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -5.30 Total: -32.65 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.74 Total: -25.20 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.65 -10.63 -39.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245084076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.146 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds