Wall clock time and date at job start Tue Mar 31 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38011 * 120.05449 * 2 1 4 4 C 1.38423 * 120.10751 * 180.29949 * 3 2 1 5 5 Cl 1.73599 * 119.89034 * 179.69758 * 4 3 2 6 6 C 1.38466 * 120.21472 * 359.67482 * 4 3 2 7 7 C 1.37975 * 120.10635 * 0.02562 * 6 4 3 8 8 C 1.39327 * 120.05217 * 179.69539 * 2 1 3 9 9 C 1.48383 * 120.10768 * 0.02562 * 8 2 1 10 10 C 1.39345 * 120.11983 * 129.72650 * 9 8 2 11 11 C 1.38011 * 119.87671 * 179.97438 * 10 9 8 12 12 C 1.38319 * 120.12383 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.88084 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47229 * 270.00212 * 13 12 11 15 15 H 1.08002 * 119.99615 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00110 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99827 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47575 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47186 * 120.00258 * 18 16 14 21 21 H 1.48503 * 109.47277 * 239.99845 * 18 16 14 22 22 C 1.38324 * 120.24548 * 0.02562 * 12 11 10 23 23 C 1.38023 * 120.11626 * 359.97438 * 22 12 11 24 24 H 1.09005 * 109.47304 * 270.30016 * 1 2 3 25 25 H 1.09002 * 109.47312 * 30.30389 * 1 2 3 26 26 H 1.09006 * 109.46977 * 150.30083 * 1 2 3 27 27 H 1.07999 * 119.94897 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.94558 * 180.02562 * 6 4 3 29 29 H 1.08003 * 120.05021 * 180.02562 * 7 6 4 30 30 H 1.08001 * 120.05868 * 359.69662 * 10 9 8 31 31 H 1.08000 * 119.93783 * 179.97438 * 11 10 9 32 32 H 1.09002 * 109.47199 * 30.00290 * 13 12 11 33 33 H 1.09000 * 109.47456 * 150.00562 * 13 12 11 34 34 H 0.97000 * 119.99980 * 179.97438 * 17 16 14 35 35 H 1.07993 * 119.94430 * 179.97438 * 22 12 11 36 36 H 1.08001 * 120.05728 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1946 0.0000 4 6 3.5824 1.1958 -0.0063 5 17 4.4461 2.7017 -0.0142 6 6 4.2804 -0.0001 -0.0058 7 6 3.5984 -1.1994 0.0005 8 6 2.2048 -1.2060 0.0064 9 6 1.4664 -2.4930 0.0127 10 6 1.7871 -3.4876 -0.9091 11 6 1.0975 -4.6830 -0.8985 12 6 0.0901 -4.8951 0.0253 13 6 -0.6590 -6.2027 0.0324 14 6 -1.8572 -6.1003 -0.8760 15 1 -2.0560 -5.1804 -1.4058 16 6 -2.6988 -7.1812 -1.0315 17 7 -2.4564 -8.3014 -0.3867 18 14 -4.1835 -7.0544 -2.1580 19 1 -4.2322 -5.6987 -2.7622 20 1 -4.0765 -8.0719 -3.2343 21 1 -5.4218 -7.2920 -1.3736 22 6 -0.2324 -3.9113 0.9427 23 6 0.4508 -2.7120 0.9410 24 1 -0.3634 0.0054 1.0277 25 1 -0.3634 0.8872 -0.5185 26 1 -0.3633 -0.8927 -0.5092 27 1 1.6583 2.1299 -0.0004 28 1 5.3603 0.0060 -0.0102 29 1 4.1437 -2.1317 0.0013 30 1 2.5707 -3.3215 -1.6335 31 1 1.3449 -5.4544 -1.6128 32 1 -0.0032 -6.9990 -0.3196 33 1 -0.9901 -6.4263 1.0465 34 1 -3.0487 -9.0618 -0.4958 35 1 -1.0201 -4.0819 1.6615 36 1 0.1985 -1.9447 1.6580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245084076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:12 Heat of formation + Delta-G solvation = 6.433662 kcal Electronic energy + Delta-G solvation = -18716.993313 eV Core-core repulsion = 15769.041275 eV Total energy + Delta-G solvation = -2947.952038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.01912 -39.49408 -37.48041 -35.56796 -34.06573 -33.46264 -31.69170 -31.26878 -28.66594 -27.76496 -25.36605 -23.75763 -23.08163 -22.36411 -21.38019 -18.52913 -18.05921 -17.09237 -16.77036 -16.66517 -15.90658 -15.89019 -15.32743 -14.85198 -14.54481 -14.41328 -14.23893 -14.08218 -13.74579 -13.56176 -13.31274 -13.26918 -13.05975 -12.65952 -12.49366 -12.40147 -12.21985 -12.14840 -11.80222 -11.68828 -11.50320 -11.35792 -10.61857 -9.95988 -9.78275 -9.72887 -8.96739 -8.20529 -6.34323 -0.13287 0.31418 0.60476 0.73875 1.14717 1.39226 1.40095 1.53288 2.38873 2.58717 3.01399 3.09976 3.64682 3.81245 3.88972 4.09518 4.16344 4.24423 4.36164 4.37738 4.54528 4.66424 4.72833 4.79534 4.81133 4.92076 5.02262 5.11651 5.23179 5.25483 5.31685 5.37111 5.40079 5.50113 5.59306 5.73706 5.74274 5.84460 6.08132 6.10456 6.24418 6.78803 7.34487 8.88444 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.037141 B = 0.003034 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.701442 B = 9226.564383 C = 9562.712182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.113 4.113 4 C -0.041 4.041 5 Cl -0.071 7.071 6 C -0.116 4.116 7 C -0.096 4.096 8 C -0.043 4.043 9 C -0.074 4.074 10 C -0.098 4.098 11 C -0.135 4.135 12 C -0.056 4.056 13 C 0.054 3.946 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.276 1.276 22 C -0.135 4.135 23 C -0.093 4.093 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.003 0.997 33 H 0.004 0.996 34 H 0.265 0.735 35 H 0.116 0.884 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.991 20.394 1.046 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.067 4.067 3 C -0.131 4.131 4 C -0.068 4.068 5 Cl -0.042 7.042 6 C -0.134 4.134 7 C -0.115 4.115 8 C -0.043 4.043 9 C -0.074 4.074 10 C -0.116 4.116 11 C -0.153 4.153 12 C -0.056 4.056 13 C 0.017 3.983 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.194 4.194 17 N -0.570 5.570 18 Si 0.789 3.211 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.153 4.153 23 C -0.111 4.111 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.133 0.867 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.007 20.365 1.069 23.666 hybrid contribution -0.794 -0.602 -0.420 1.082 sum 11.213 19.763 0.649 22.732 Atomic orbital electron populations 1.20959 0.89792 1.03396 1.03401 1.20043 0.96985 0.91356 0.98307 1.21007 0.92006 0.98789 1.01326 1.21084 0.92661 0.87385 1.05627 1.98365 1.76863 1.31983 1.96950 1.21153 1.01319 0.90095 1.00830 1.21353 0.92737 0.98648 0.98714 1.18841 0.93357 0.91548 1.00583 1.18653 0.97705 0.93405 0.97673 1.21272 0.99662 0.92100 0.98567 1.21031 0.96903 0.98235 0.99119 1.20471 0.94178 0.96772 0.94212 1.18139 0.93992 0.90080 0.96088 1.21394 1.09609 0.98632 1.26788 0.92712 1.25923 1.01127 0.94845 0.97519 1.70083 1.39514 1.03683 1.43765 0.85395 0.78669 0.78485 0.78511 1.18868 1.20240 1.20156 1.21039 1.00576 0.93921 0.99725 1.21276 0.94903 0.96466 0.98449 0.89709 0.89882 0.92152 0.83359 0.83110 0.83827 0.84231 0.86680 0.97844 0.97793 0.92564 0.86595 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.46 71.24 0.60 -1.74 16 2 C -0.07 -1.42 5.87 -19.65 -0.12 -1.54 16 3 C -0.11 -2.12 9.47 22.26 0.21 -1.91 16 4 C -0.04 -0.77 6.32 22.37 0.14 -0.63 16 5 Cl -0.07 -1.19 28.95 -2.72 -0.08 -1.27 16 6 C -0.12 -2.08 9.81 22.26 0.22 -1.87 16 7 C -0.10 -1.97 9.51 22.48 0.21 -1.75 16 8 C -0.04 -1.02 5.47 -20.04 -0.11 -1.13 16 9 C -0.07 -2.13 4.71 -20.05 -0.09 -2.22 16 10 C -0.10 -3.00 9.51 22.48 0.21 -2.79 16 11 C -0.13 -5.11 9.68 22.24 0.22 -4.89 16 12 C -0.06 -2.44 5.07 -19.82 -0.10 -2.54 16 13 C 0.05 2.87 5.10 29.10 0.15 3.01 16 14 C -0.53 -29.85 9.09 25.60 0.23 -29.61 16 15 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 18 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 C -0.13 -5.06 9.68 22.24 0.22 -4.85 16 23 C -0.09 -2.82 7.92 22.48 0.18 -2.64 16 24 H 0.08 1.47 7.51 -2.38 -0.02 1.46 16 25 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 26 H 0.06 1.45 6.46 -2.38 -0.02 1.44 16 27 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 29 H 0.14 2.57 8.04 -2.91 -0.02 2.54 16 30 H 0.14 3.48 8.04 -2.91 -0.02 3.46 16 31 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 32 H 0.00 0.18 8.08 -2.39 -0.02 0.17 16 33 H 0.00 0.21 8.08 -2.39 -0.02 0.19 16 34 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.14 3.46 6.88 -2.91 -0.02 3.44 16 Total: -1.00 -63.09 323.72 5.94 -57.15 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.08 Total: 10.06 kcal Atomic # 6 Polarization: -59.04 SS G_CDS: 2.63 Total: -56.41 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.54 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -63.09 5.94 -57.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245084076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.585 kcal (2) G-P(sol) polarization free energy of solvation -63.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds