Wall clock time and date at job start Tue Mar 31 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21272 * 120.00485 * 2 1 4 4 C 1.46996 * 119.99883 * 179.97438 * 2 1 3 5 5 C 1.40000 * 120.13547 * 359.97438 * 4 2 1 6 6 C 1.37877 * 120.11611 * 180.02562 * 5 4 2 7 7 C 1.38261 * 120.39163 * 359.73995 * 6 5 4 8 8 C 1.39406 * 120.26608 * 0.51718 * 7 6 5 9 9 C 1.48252 * 120.05387 * 179.76315 * 8 7 6 10 10 C 1.40070 * 119.98714 * 132.13394 * 9 8 7 11 11 N 1.32170 * 120.29207 * 180.02562 * 10 9 8 12 12 C 1.31892 * 120.28658 * 359.72996 * 11 10 9 13 13 C 1.40816 * 119.97092 * 0.52043 * 12 11 10 14 14 C 1.41322 * 120.14574 * 179.75471 * 13 12 11 15 15 H 1.08004 * 119.99894 * 6.22998 * 14 13 12 16 16 C 1.40048 * 120.00068 * 186.23608 * 14 13 12 17 17 N 1.30733 * 119.99709 * 184.71177 * 16 14 13 18 18 Si 1.86797 * 120.00197 * 4.70827 * 16 14 13 19 19 H 1.48500 * 109.47168 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.46916 * 300.00713 * 18 16 14 21 21 H 1.48508 * 109.46954 * 60.00272 * 18 16 14 22 22 N 1.32531 * 119.99141 * 312.14968 * 9 8 7 23 23 C 1.39460 * 119.88190 * 359.48966 * 8 7 6 24 24 F 1.35106 * 120.19290 * 180.27931 * 23 8 7 25 25 H 1.08997 * 109.47262 * 269.99998 * 1 2 3 26 26 H 1.08998 * 109.46650 * 29.99836 * 1 2 3 27 27 H 1.09000 * 109.46582 * 149.99848 * 1 2 3 28 28 H 1.08007 * 119.94477 * 359.97438 * 5 4 2 29 29 H 1.07995 * 119.81125 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.86882 * 180.25252 * 7 6 5 31 31 H 1.08002 * 119.85346 * 0.03794 * 10 9 8 32 32 H 1.07998 * 120.01171 * 180.25306 * 12 11 10 33 33 H 0.97002 * 120.00322 * 354.91190 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 6 2.2420 -1.2730 0.0006 5 6 1.5449 -2.4871 0.0017 6 6 2.2346 -3.6809 0.0027 7 6 3.6172 -3.6900 -0.0027 8 6 4.3277 -2.4906 0.0016 9 6 5.8101 -2.5057 0.0011 10 6 6.5182 -1.6957 -0.8958 11 7 7.8399 -1.7049 -0.9018 12 6 8.5036 -2.4729 -0.0597 13 6 7.8034 -3.2959 0.8433 14 6 8.5108 -4.1242 1.7437 15 1 9.5864 -4.0539 1.8108 16 6 7.8170 -5.0362 2.5489 17 7 8.4598 -5.7364 3.4464 18 14 5.9733 -5.2520 2.3404 19 1 5.4816 -6.2682 3.3053 20 1 5.2915 -3.9575 2.5950 21 1 5.6810 -5.7015 0.9555 22 7 6.4649 -3.2860 0.8490 23 6 3.6414 -1.2765 0.0006 24 9 4.3237 -0.1103 -0.0010 25 1 -0.3634 0.0000 1.0276 26 1 -0.3632 0.8900 -0.5138 27 1 -0.3632 -0.8900 -0.5139 28 1 0.4648 -2.4886 0.0025 29 1 1.6919 -4.6146 0.0031 30 1 4.1489 -4.6300 -0.0059 31 1 5.9818 -1.0606 -1.5853 32 1 9.5835 -2.4739 -0.0657 33 1 9.4263 -5.6794 3.5052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245149911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:04 Heat of formation + Delta-G solvation = -31.461457 kcal Electronic energy + Delta-G solvation = -21714.058854 eV Core-core repulsion = 18232.586842 eV Total energy + Delta-G solvation = -3481.472012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.69025 -39.92797 -39.41725 -38.02687 -34.37151 -33.43296 -32.15491 -31.27034 -29.93911 -28.97211 -26.10187 -24.41734 -23.40501 -22.40558 -21.16049 -19.71556 -18.70455 -17.64038 -16.63570 -16.49517 -16.03150 -15.85061 -15.54248 -15.06708 -14.74569 -14.62564 -14.48662 -13.80014 -13.55324 -13.24990 -13.00491 -12.55824 -12.46365 -12.44646 -12.11675 -12.01195 -11.85392 -11.37453 -11.24825 -11.03809 -10.02759 -9.97448 -9.78642 -9.57014 -9.25606 -9.11979 -8.80212 -8.04639 -7.85932 -7.33934 -5.07218 0.50641 0.99674 2.04238 2.36030 2.47303 3.34734 3.45592 3.60833 3.77662 3.82512 4.17781 4.21759 4.41638 4.55967 4.77234 4.84543 4.92728 5.09112 5.18698 5.20376 5.31947 5.53469 5.58938 5.77419 5.84544 5.86952 5.98349 6.11446 6.24724 6.30681 6.49706 6.68351 6.76586 7.13762 7.18671 7.41591 7.73053 7.89306 8.27063 8.67046 9.14736 9.72828 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.005914 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.987567 B = 4733.009523 C = 5610.234813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.392 3.608 3 O -0.448 6.448 4 C -0.216 4.216 5 C -0.049 4.049 6 C -0.146 4.146 7 C -0.037 4.037 8 C -0.066 4.066 9 C 0.159 3.841 10 C -0.090 4.090 11 N -0.417 5.417 12 C -0.034 4.034 13 C 0.199 3.801 14 C -0.449 4.449 15 H 0.091 0.909 16 C 0.042 3.958 17 N -0.788 5.788 18 Si 1.139 2.861 19 H -0.323 1.323 20 H -0.270 1.270 21 H -0.289 1.289 22 N -0.531 5.531 23 C 0.175 3.825 24 F -0.108 7.108 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 1.935 -4.935 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.270 3.730 3 O -0.323 6.323 4 C -0.218 4.218 5 C -0.068 4.068 6 C -0.164 4.164 7 C -0.056 4.056 8 C -0.068 4.068 9 C 0.015 3.985 10 C -0.246 4.246 11 N -0.128 5.128 12 C -0.206 4.206 13 C 0.074 3.926 14 C -0.482 4.482 15 H 0.109 0.891 16 C -0.181 4.181 17 N -0.408 5.408 18 Si 0.972 3.028 19 H -0.256 1.256 20 H -0.197 1.197 21 H -0.217 1.217 22 N -0.254 5.254 23 C 0.154 3.846 24 F -0.086 7.086 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.159 0.841 29 H 0.157 0.843 30 H 0.160 0.840 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.414 1.777 -4.289 17.058 hybrid contribution 1.860 0.859 -0.515 2.112 sum -14.554 2.636 -4.804 15.552 Atomic orbital electron populations 1.22199 0.93329 1.04889 1.04815 1.22315 0.91762 0.87168 0.71749 1.90615 1.71991 1.34000 1.35707 1.20489 0.91951 0.96672 1.12725 1.21339 1.00103 0.90449 0.94884 1.21119 0.93829 0.98521 1.02905 1.21627 0.94011 0.97853 0.92118 1.18668 0.92523 0.91854 1.03782 1.20001 0.91056 0.94302 0.93096 1.22465 0.90502 1.06547 1.05116 1.67741 1.08373 1.16788 1.19894 1.23241 0.99669 1.00072 0.97602 1.19428 0.88024 0.92611 0.92503 1.20825 0.96422 1.14961 1.15973 0.89103 1.27834 1.10602 0.90357 0.89337 1.70625 1.12499 1.32765 1.24954 0.82215 0.70611 0.75328 0.74617 1.25588 1.19675 1.21743 1.67558 1.08701 1.25165 1.23969 1.17924 0.88649 0.81287 0.96766 1.91598 1.79417 1.45301 1.92317 0.88398 0.89376 0.89435 0.84053 0.84331 0.83980 0.84694 0.83989 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.45 9.75 36.01 0.35 -1.10 16 2 C 0.39 5.10 7.22 -30.76 -0.22 4.88 16 3 O -0.45 -7.71 16.08 5.56 0.09 -7.62 16 4 C -0.22 -3.02 5.87 -105.05 -0.62 -3.63 16 5 C -0.05 -0.51 9.36 -39.05 -0.37 -0.88 16 6 C -0.15 -1.67 10.01 -39.71 -0.40 -2.07 16 7 C -0.04 -0.60 9.22 -39.14 -0.36 -0.96 16 8 C -0.07 -1.25 5.63 -104.89 -0.59 -1.85 16 9 C 0.16 3.62 6.19 -82.76 -0.51 3.11 16 10 C -0.09 -2.05 10.02 -16.72 -0.17 -2.22 16 11 N -0.42 -10.00 10.47 -12.05 -0.13 -10.12 16 12 C -0.03 -0.81 10.97 -16.55 -0.18 -0.99 16 13 C 0.20 5.08 6.38 -84.84 -0.54 4.54 16 14 C -0.45 -11.59 9.59 -37.73 -0.36 -11.95 16 15 H 0.09 2.28 8.05 -52.48 -0.42 1.86 16 16 C 0.04 1.08 5.52 -17.34 -0.10 0.99 16 17 N -0.79 -20.30 13.65 55.55 0.76 -19.54 16 18 Si 1.14 26.43 24.40 -169.99 -4.15 22.29 16 19 H -0.32 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.27 -6.38 6.58 56.52 0.37 -6.01 16 21 H -0.29 -6.39 6.27 56.52 0.35 -6.04 16 22 N -0.53 -13.23 4.58 -7.51 -0.03 -13.26 16 23 C 0.17 3.13 7.12 -38.49 -0.27 2.86 16 24 F -0.11 -2.20 13.97 2.25 0.03 -2.17 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.43 6.46 -51.93 -0.34 0.09 16 28 H 0.14 0.84 6.34 -52.48 -0.33 0.51 16 29 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.14 2.35 6.33 -52.49 -0.33 2.02 16 31 H 0.14 2.82 7.58 -52.49 -0.40 2.42 16 32 H 0.14 3.07 8.06 -52.49 -0.42 2.65 16 33 H 0.29 7.02 8.72 -40.82 -0.36 6.67 16 LS Contribution 291.83 15.07 4.40 4.40 Total: -1.00 -30.96 291.83 -6.11 -37.07 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -2.74 Total: -1.76 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -4.34 Total: -9.27 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.60 Total: -42.92 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.03 Total: -2.17 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -4.15 Total: 22.29 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.96 -6.11 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245149911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.610 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds