Wall clock time and date at job start Tue Mar 31 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21272 * 120.00485 * 2 1 4 4 C 1.46996 * 119.99883 * 179.97438 * 2 1 3 5 5 C 1.40000 * 120.13547 * 359.97438 * 4 2 1 6 6 C 1.37877 * 120.11611 * 180.02562 * 5 4 2 7 7 C 1.38261 * 120.39163 * 359.73995 * 6 5 4 8 8 C 1.39406 * 120.26608 * 0.51718 * 7 6 5 9 9 C 1.48252 * 120.05387 * 179.76315 * 8 7 6 10 10 C 1.40070 * 119.98714 * 132.13394 * 9 8 7 11 11 N 1.32170 * 120.29207 * 180.02562 * 10 9 8 12 12 C 1.31892 * 120.28658 * 359.72996 * 11 10 9 13 13 C 1.40816 * 119.97092 * 0.52043 * 12 11 10 14 14 C 1.41322 * 120.14574 * 179.75471 * 13 12 11 15 15 H 1.08004 * 119.99894 * 6.22998 * 14 13 12 16 16 C 1.40048 * 120.00068 * 186.23608 * 14 13 12 17 17 N 1.30733 * 119.99709 * 184.71177 * 16 14 13 18 18 Si 1.86797 * 120.00197 * 4.70827 * 16 14 13 19 19 H 1.48500 * 109.47168 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.46916 * 300.00713 * 18 16 14 21 21 H 1.48508 * 109.46954 * 60.00272 * 18 16 14 22 22 N 1.32531 * 119.99141 * 312.14968 * 9 8 7 23 23 C 1.39460 * 119.88190 * 359.48966 * 8 7 6 24 24 F 1.35106 * 120.19290 * 180.27931 * 23 8 7 25 25 H 1.08997 * 109.47262 * 269.99998 * 1 2 3 26 26 H 1.08998 * 109.46650 * 29.99836 * 1 2 3 27 27 H 1.09000 * 109.46582 * 149.99848 * 1 2 3 28 28 H 1.08007 * 119.94477 * 359.97438 * 5 4 2 29 29 H 1.07995 * 119.81125 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.86882 * 180.25252 * 7 6 5 31 31 H 1.08002 * 119.85346 * 0.03794 * 10 9 8 32 32 H 1.07998 * 120.01171 * 180.25306 * 12 11 10 33 33 H 0.97002 * 120.00322 * 354.91190 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 6 2.2420 -1.2730 0.0006 5 6 1.5449 -2.4871 0.0017 6 6 2.2346 -3.6809 0.0027 7 6 3.6172 -3.6900 -0.0027 8 6 4.3277 -2.4906 0.0016 9 6 5.8101 -2.5057 0.0011 10 6 6.5182 -1.6957 -0.8958 11 7 7.8399 -1.7049 -0.9018 12 6 8.5036 -2.4729 -0.0597 13 6 7.8034 -3.2959 0.8433 14 6 8.5108 -4.1242 1.7437 15 1 9.5864 -4.0539 1.8108 16 6 7.8170 -5.0362 2.5489 17 7 8.4598 -5.7364 3.4464 18 14 5.9733 -5.2520 2.3404 19 1 5.4816 -6.2682 3.3053 20 1 5.2915 -3.9575 2.5950 21 1 5.6810 -5.7015 0.9555 22 7 6.4649 -3.2860 0.8490 23 6 3.6414 -1.2765 0.0006 24 9 4.3237 -0.1103 -0.0010 25 1 -0.3634 0.0000 1.0276 26 1 -0.3632 0.8900 -0.5138 27 1 -0.3632 -0.8900 -0.5139 28 1 0.4648 -2.4886 0.0025 29 1 1.6919 -4.6146 0.0031 30 1 4.1489 -4.6300 -0.0059 31 1 5.9818 -1.0606 -1.5853 32 1 9.5835 -2.4739 -0.0657 33 1 9.4263 -5.6794 3.5052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245149911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:04 Heat of formation + Delta-G solvation = -51.571742 kcal Electronic energy + Delta-G solvation = -21714.930901 eV Core-core repulsion = 18232.586842 eV Total energy + Delta-G solvation = -3482.344060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.07620 -41.49194 -40.72521 -39.20346 -36.30067 -35.04762 -33.78511 -32.48032 -31.14035 -30.05822 -27.96547 -25.84106 -24.66000 -24.09957 -22.59755 -20.85129 -20.64180 -18.84877 -18.20471 -17.76259 -17.63969 -17.41835 -16.86800 -16.46389 -15.83389 -15.76192 -15.61449 -15.53178 -15.28982 -14.96190 -14.50684 -14.18791 -13.66624 -13.36388 -13.28930 -13.24749 -12.96590 -12.94875 -12.83981 -12.47222 -11.93335 -11.77779 -11.42968 -11.13111 -10.83232 -10.57827 -10.02297 -9.80348 -9.65564 -9.23568 -7.05171 -0.57637 -0.31063 0.38625 0.58551 1.32215 1.46834 1.61156 1.94043 2.34274 2.44366 2.55707 2.81718 3.09694 3.17549 3.32143 3.73720 3.75845 3.86184 3.97709 4.08605 4.19082 4.28526 4.47560 4.62907 4.72127 4.77589 4.83383 4.88303 4.91735 5.10524 5.19682 5.21037 5.28070 5.33633 5.70157 5.76419 5.97670 6.32191 6.49203 6.77027 7.24943 7.76279 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.005914 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.987567 B = 4733.009523 C = 5610.234813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.390 3.610 3 O -0.504 6.504 4 C -0.221 4.221 5 C -0.013 4.013 6 C -0.126 4.126 7 C -0.051 4.051 8 C -0.104 4.104 9 C 0.158 3.842 10 C -0.093 4.093 11 N -0.426 5.426 12 C -0.050 4.050 13 C 0.187 3.813 14 C -0.473 4.473 15 H 0.085 0.915 16 C 0.017 3.983 17 N -0.804 5.804 18 Si 1.166 2.834 19 H -0.315 1.315 20 H -0.280 1.280 21 H -0.277 1.277 22 N -0.543 5.543 23 C 0.140 3.860 24 F -0.136 7.136 25 H 0.121 0.879 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.206 0.794 29 H 0.189 0.811 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.375 1.066 -5.538 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.272 3.728 3 O -0.383 6.383 4 C -0.223 4.223 5 C -0.031 4.031 6 C -0.143 4.143 7 C -0.070 4.070 8 C -0.107 4.107 9 C 0.015 3.985 10 C -0.250 4.250 11 N -0.137 5.137 12 C -0.220 4.220 13 C 0.061 3.939 14 C -0.506 4.506 15 H 0.103 0.897 16 C -0.203 4.203 17 N -0.426 5.426 18 Si 0.996 3.004 19 H -0.247 1.247 20 H -0.208 1.208 21 H -0.205 1.205 22 N -0.266 5.266 23 C 0.120 3.880 24 F -0.114 7.114 25 H 0.139 0.861 26 H 0.110 0.890 27 H 0.144 0.856 28 H 0.223 0.777 29 H 0.206 0.794 30 H 0.149 0.851 31 H 0.167 0.833 32 H 0.176 0.824 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.154 0.888 -4.900 21.732 hybrid contribution 3.172 1.207 -0.419 3.420 sum -17.982 2.095 -5.319 18.869 Atomic orbital electron populations 1.22273 0.88039 1.07068 1.06791 1.23225 0.94348 0.85746 0.69527 1.90611 1.73609 1.35648 1.38384 1.20978 0.90296 0.99132 1.11900 1.22060 1.02839 0.88091 0.90097 1.21678 0.91736 1.01145 0.99762 1.21745 0.96281 0.96038 0.92939 1.18637 0.90365 0.93787 1.07894 1.20596 0.93560 0.92764 0.91614 1.22849 0.90395 1.06531 1.05246 1.67761 1.09074 1.16850 1.20025 1.23454 1.00539 1.00281 0.97768 1.19629 0.88797 0.92764 0.92669 1.20857 0.96362 1.16169 1.17226 0.89681 1.28543 1.12564 0.90093 0.89062 1.70636 1.12728 1.33614 1.25612 0.81903 0.68323 0.74869 0.75269 1.24746 1.20766 1.20461 1.67604 1.08407 1.26064 1.24569 1.18366 0.90497 0.80054 0.99127 1.91518 1.80305 1.46661 1.92961 0.86098 0.88951 0.85592 0.77747 0.79391 0.85100 0.83275 0.82402 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 9.75 71.24 0.69 -1.02 16 2 C 0.39 9.04 7.22 27.99 0.20 9.24 16 3 O -0.50 -17.21 16.08 -3.00 -0.05 -17.26 16 4 C -0.22 -5.47 5.87 -20.14 -0.12 -5.59 16 5 C -0.01 -0.19 9.36 22.61 0.21 0.02 16 6 C -0.13 -2.17 10.01 22.19 0.22 -1.95 16 7 C -0.05 -1.52 9.22 22.56 0.21 -1.31 16 8 C -0.10 -3.95 5.63 -20.04 -0.11 -4.06 16 9 C 0.16 7.35 6.19 42.15 0.26 7.61 16 10 C -0.09 -4.38 10.02 85.09 0.85 -3.53 16 11 N -0.43 -20.93 10.47 -192.03 -2.01 -22.95 16 12 C -0.05 -2.49 10.97 85.31 0.94 -1.56 16 13 C 0.19 9.82 6.38 40.23 0.26 10.08 16 14 C -0.47 -25.28 9.59 23.47 0.23 -25.05 16 15 H 0.09 4.48 8.05 -2.91 -0.02 4.46 16 16 C 0.02 0.91 5.52 85.30 0.47 1.39 16 17 N -0.80 -42.18 13.65 21.84 0.30 -41.88 16 18 Si 1.17 53.59 24.40 68.60 1.67 55.27 16 19 H -0.32 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.28 -13.26 6.58 99.48 0.65 -12.61 16 21 H -0.28 -12.01 6.27 99.48 0.62 -11.38 16 22 N -0.54 -27.60 4.58 -177.66 -0.81 -28.42 16 23 C 0.14 4.99 7.12 22.98 0.16 5.15 16 24 F -0.14 -5.76 13.97 44.97 0.63 -5.13 16 25 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.13 0.19 6.46 -2.39 -0.02 0.17 16 28 H 0.21 0.41 6.34 -2.91 -0.02 0.39 16 29 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.13 4.12 6.33 -2.91 -0.02 4.10 16 31 H 0.15 6.43 7.58 -2.91 -0.02 6.41 16 32 H 0.16 7.07 8.06 -2.91 -0.02 7.05 16 33 H 0.29 14.49 8.72 -92.71 -0.81 13.68 16 Total: -1.00 -74.06 291.83 5.19 -68.87 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 0.99 Total: 2.07 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 4.47 Total: -10.58 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -2.53 Total: -93.24 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.05 Total: -17.26 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.63 Total: -5.13 kcal Atomic # 14 Polarization: 53.59 SS G_CDS: 1.67 Total: 55.27 kcal Total: -74.06 5.19 -68.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245149911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.296 kcal (2) G-P(sol) polarization free energy of solvation -74.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds