Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37921 * 119.93633 * 2 1 4 4 C 1.50706 * 120.06108 * 0.04756 * 3 2 1 5 5 C 1.39602 * 119.86833 * 180.02562 * 3 2 1 6 6 C 1.47971 * 120.12789 * 179.97438 * 5 3 2 7 7 C 1.39956 * 119.87959 * 310.29073 * 6 5 3 8 8 C 1.36243 * 120.11417 * 180.30331 * 7 6 5 9 9 C 1.40941 * 119.88068 * 359.43293 * 8 7 6 10 10 C 1.41023 * 120.11562 * 180.30225 * 9 8 7 11 11 H 1.08000 * 119.99611 * 204.67983 * 10 9 8 12 12 C 1.40006 * 120.00008 * 24.67366 * 10 9 8 13 13 N 1.30796 * 120.00137 * 17.95111 * 12 10 9 14 14 Si 1.86802 * 119.99720 * 197.95275 * 12 10 9 15 15 H 1.48500 * 109.47122 * 59.99923 * 14 12 10 16 16 H 1.48500 * 109.46839 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47010 * 300.00112 * 14 12 10 18 18 C 1.40934 * 119.76366 * 0.27291 * 9 8 7 19 19 C 1.36243 * 119.88135 * 0.02562 * 18 9 8 20 20 C 1.39640 * 119.73841 * 0.25438 * 5 3 2 21 21 C 1.37875 * 119.86979 * 359.49403 * 20 5 3 22 22 C 1.38505 * 119.93505 * 180.02562 * 2 1 3 23 23 Cl 1.73600 * 119.86723 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47038 * 89.99945 * 1 2 3 25 25 H 1.09003 * 109.46858 * 209.99764 * 1 2 3 26 26 H 1.08994 * 109.47533 * 329.99653 * 1 2 3 27 27 H 1.09003 * 109.46998 * 269.96895 * 4 3 2 28 28 H 1.08994 * 109.47519 * 29.97564 * 4 3 2 29 29 H 1.09007 * 109.46764 * 149.97924 * 4 3 2 30 30 H 1.07994 * 119.94204 * 0.03346 * 7 6 5 31 31 H 1.08001 * 120.06257 * 179.70770 * 8 7 6 32 32 H 0.97000 * 119.99901 * 179.97438 * 13 12 10 33 33 H 1.07999 * 120.05606 * 180.02562 * 18 9 8 34 34 H 1.07995 * 119.93837 * 179.97438 * 19 18 9 35 35 H 1.07998 * 120.06380 * 179.72360 * 20 5 3 36 36 H 1.07995 * 119.93534 * 180.22480 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 1.4417 2.5003 0.0011 5 6 3.5913 1.1935 -0.0005 6 6 4.3355 2.4725 -0.0011 7 6 4.0075 3.4696 -0.9269 8 6 4.6938 4.6465 -0.9357 9 6 5.7275 4.8636 -0.0026 10 6 6.4368 6.0825 -0.0031 11 1 7.4394 6.1240 0.3961 12 6 5.8412 7.2388 -0.5213 13 7 4.5437 7.2923 -0.6775 14 14 6.8996 8.7050 -0.9897 15 1 7.8698 8.3002 -2.0386 16 1 6.0344 9.7939 -1.5101 17 1 7.6362 9.1861 0.2067 18 6 6.0494 3.8585 0.9314 19 6 5.3610 2.6828 0.9277 20 6 4.2825 -0.0198 -0.0065 21 6 3.5836 -1.2082 -0.0012 22 6 2.1981 -1.2003 -0.0005 23 17 1.3250 -2.7007 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.2597 2.8157 -1.0264 28 1 0.4895 2.3697 0.5151 29 1 2.0310 3.2597 0.5152 30 1 3.2121 3.3040 -1.6383 31 1 4.4431 5.4136 -1.6535 32 1 4.1310 8.0936 -1.0362 33 1 6.8404 4.0200 1.6488 34 1 5.6072 1.9118 1.6427 35 1 5.3624 -0.0272 -0.0114 36 1 4.1171 -2.1472 -0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245687357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = 14.461943 kcal Electronic energy + Delta-G solvation = -19199.054102 eV Core-core repulsion = 16251.450197 eV Total energy + Delta-G solvation = -2947.603906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.50496 -37.48732 -36.22277 -34.03414 -33.20073 -31.96353 -29.58606 -29.22204 -27.30089 -26.16583 -25.09724 -21.95637 -21.06491 -20.39391 -19.73987 -17.44999 -16.22569 -15.77470 -15.46329 -15.05470 -14.30199 -14.03334 -13.50692 -13.37768 -12.90976 -12.75559 -12.64967 -12.49394 -12.25826 -12.13094 -11.91727 -11.78184 -11.59718 -11.25147 -11.04365 -10.84622 -10.81938 -10.69256 -10.45432 -10.37196 -9.77297 -9.48856 -9.32304 -8.33500 -8.22867 -7.63807 -7.23680 -6.92942 -4.47561 1.43529 1.63812 2.39017 2.66602 2.97879 2.99965 3.03993 3.10693 3.80353 3.99367 4.49889 5.02489 5.04139 5.33365 5.43301 5.54963 5.63754 5.69660 5.82677 5.86112 5.99427 6.09798 6.17642 6.25176 6.26839 6.30353 6.56005 6.62240 6.72595 6.85365 6.89730 7.02344 7.13464 7.24177 7.26138 7.50162 7.79243 7.92042 8.00589 8.14573 8.48467 8.72366 8.83219 9.99257 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.039344 B = 0.003547 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.504624 B = 7891.716109 C = 8405.048055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.076 4.076 3 C -0.083 4.083 4 C -0.112 4.112 5 C 0.024 3.976 6 C -0.207 4.207 7 C -0.071 4.071 8 C -0.173 4.173 9 C 0.119 3.881 10 C -0.452 4.452 11 H 0.080 0.920 12 C 0.076 3.924 13 N -0.781 5.781 14 Si 0.910 3.090 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.264 1.264 18 C -0.231 4.231 19 C -0.062 4.062 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.060 4.060 23 Cl -0.091 7.091 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.284 0.716 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 -9.268 -0.131 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.083 4.083 4 C -0.169 4.169 5 C 0.024 3.976 6 C -0.209 4.209 7 C -0.089 4.089 8 C -0.192 4.192 9 C 0.117 3.883 10 C -0.481 4.481 11 H 0.098 0.902 12 C -0.144 4.144 13 N -0.404 5.404 14 Si 0.734 3.266 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.188 1.188 18 C -0.251 4.251 19 C -0.080 4.080 20 C -0.140 4.140 21 C -0.128 4.128 22 C -0.086 4.086 23 Cl -0.063 7.063 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.515 -9.218 -0.197 10.744 hybrid contribution 0.405 0.482 -0.186 0.657 sum -5.110 -8.736 -0.383 10.128 Atomic orbital electron populations 1.20883 0.91099 1.03019 1.02431 1.19425 0.96056 0.90965 1.01209 1.19830 0.93172 0.94120 1.01196 1.20909 0.99197 0.94546 1.02209 1.19024 0.91647 0.93435 0.93485 1.17949 1.03695 0.93992 1.05230 1.20468 0.98064 0.93329 0.97089 1.20984 1.00420 0.96484 1.01300 1.17697 0.90439 0.91809 0.88385 1.19649 1.01504 0.92730 1.34167 0.90156 1.25992 0.94965 1.00609 0.92858 1.69800 1.10420 1.29216 1.31013 0.86324 0.80586 0.79592 0.80075 1.18640 1.20167 1.18834 1.20655 1.05169 0.96492 1.02749 1.20293 0.94687 0.96311 0.96752 1.21230 0.99893 0.90944 1.01938 1.20820 0.91692 0.98720 1.01613 1.20624 0.92004 0.85597 1.10404 1.98304 1.77119 1.33549 1.97283 0.91176 0.91413 0.90910 0.91436 0.92188 0.89948 0.89200 0.86409 0.90470 0.88838 0.89306 0.85519 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.20 36.00 0.33 -1.13 16 2 C -0.08 -1.16 5.88 -104.64 -0.62 -1.78 16 3 C -0.08 -1.41 5.87 -104.23 -0.61 -2.02 16 4 C -0.11 -1.80 8.03 36.01 0.29 -1.51 16 5 C 0.02 0.45 5.47 -104.88 -0.57 -0.12 16 6 C -0.21 -4.38 4.76 -104.63 -0.50 -4.88 16 7 C -0.07 -1.57 7.82 -39.66 -0.31 -1.88 16 8 C -0.17 -4.24 8.63 -39.28 -0.34 -4.58 16 9 C 0.12 3.02 5.57 -106.80 -0.60 2.43 16 10 C -0.45 -11.38 9.03 -37.86 -0.34 -11.72 16 11 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 12 C 0.08 1.79 5.13 -17.33 -0.09 1.70 16 13 N -0.78 -19.03 10.96 55.55 0.61 -18.42 16 14 Si 0.91 17.66 29.60 -169.99 -5.03 12.62 16 15 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 16 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 18 C -0.23 -5.42 9.73 -39.28 -0.38 -5.80 16 19 C -0.06 -1.34 9.44 -39.66 -0.37 -1.72 16 20 C -0.12 -2.03 9.51 -39.19 -0.37 -2.40 16 21 C -0.11 -1.65 9.81 -39.60 -0.39 -2.04 16 22 C -0.06 -0.90 6.32 -39.37 -0.25 -1.15 16 23 Cl -0.09 -1.19 27.27 -51.86 -1.41 -2.60 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.79 6.89 -51.93 -0.36 0.43 16 26 H 0.07 0.84 5.94 -51.93 -0.31 0.53 16 27 H 0.07 1.03 7.47 -51.93 -0.39 0.65 16 28 H 0.06 0.81 5.94 -51.93 -0.31 0.50 16 29 H 0.08 1.52 6.45 -51.93 -0.34 1.18 16 30 H 0.09 1.84 6.79 -52.49 -0.36 1.48 16 31 H 0.12 2.99 6.16 -52.49 -0.32 2.66 16 32 H 0.28 6.29 8.30 -40.82 -0.34 5.96 16 33 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 34 H 0.09 1.72 8.04 -52.49 -0.42 1.30 16 35 H 0.13 1.98 8.04 -52.49 -0.42 1.56 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -25.22 311.53 -10.30 -35.52 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.04 Total: 6.79 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: -5.12 Total: -38.61 kcal Atomic # 7 Polarization: -19.03 SS G_CDS: 0.61 Total: -18.42 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.41 Total: -2.60 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.22 -10.30 -35.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245687357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.980 kcal (2) G-P(sol) polarization free energy of solvation -25.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds