Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37921 * 119.93633 * 2 1 4 4 C 1.50706 * 120.06108 * 0.04756 * 3 2 1 5 5 C 1.39602 * 119.86833 * 180.02562 * 3 2 1 6 6 C 1.47971 * 120.12789 * 179.97438 * 5 3 2 7 7 C 1.39956 * 119.87959 * 310.29073 * 6 5 3 8 8 C 1.36243 * 120.11417 * 180.30331 * 7 6 5 9 9 C 1.40941 * 119.88068 * 359.43293 * 8 7 6 10 10 C 1.41023 * 120.11562 * 180.30225 * 9 8 7 11 11 H 1.08000 * 119.99611 * 204.67983 * 10 9 8 12 12 C 1.40006 * 120.00008 * 24.67366 * 10 9 8 13 13 N 1.30796 * 120.00137 * 17.95111 * 12 10 9 14 14 Si 1.86802 * 119.99720 * 197.95275 * 12 10 9 15 15 H 1.48500 * 109.47122 * 59.99923 * 14 12 10 16 16 H 1.48500 * 109.46839 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47010 * 300.00112 * 14 12 10 18 18 C 1.40934 * 119.76366 * 0.27291 * 9 8 7 19 19 C 1.36243 * 119.88135 * 0.02562 * 18 9 8 20 20 C 1.39640 * 119.73841 * 0.25438 * 5 3 2 21 21 C 1.37875 * 119.86979 * 359.49403 * 20 5 3 22 22 C 1.38505 * 119.93505 * 180.02562 * 2 1 3 23 23 Cl 1.73600 * 119.86723 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47038 * 89.99945 * 1 2 3 25 25 H 1.09003 * 109.46858 * 209.99764 * 1 2 3 26 26 H 1.08994 * 109.47533 * 329.99653 * 1 2 3 27 27 H 1.09003 * 109.46998 * 269.96895 * 4 3 2 28 28 H 1.08994 * 109.47519 * 29.97564 * 4 3 2 29 29 H 1.09007 * 109.46764 * 149.97924 * 4 3 2 30 30 H 1.07994 * 119.94204 * 0.03346 * 7 6 5 31 31 H 1.08001 * 120.06257 * 179.70770 * 8 7 6 32 32 H 0.97000 * 119.99901 * 179.97438 * 13 12 10 33 33 H 1.07999 * 120.05606 * 180.02562 * 18 9 8 34 34 H 1.07995 * 119.93837 * 179.97438 * 19 18 9 35 35 H 1.07998 * 120.06380 * 179.72360 * 20 5 3 36 36 H 1.07995 * 119.93534 * 180.22480 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 1.4417 2.5003 0.0011 5 6 3.5913 1.1935 -0.0005 6 6 4.3355 2.4725 -0.0011 7 6 4.0075 3.4696 -0.9269 8 6 4.6938 4.6465 -0.9357 9 6 5.7275 4.8636 -0.0026 10 6 6.4368 6.0825 -0.0031 11 1 7.4394 6.1240 0.3961 12 6 5.8412 7.2388 -0.5213 13 7 4.5437 7.2923 -0.6775 14 14 6.8996 8.7050 -0.9897 15 1 7.8698 8.3002 -2.0386 16 1 6.0344 9.7939 -1.5101 17 1 7.6362 9.1861 0.2067 18 6 6.0494 3.8585 0.9314 19 6 5.3610 2.6828 0.9277 20 6 4.2825 -0.0198 -0.0065 21 6 3.5836 -1.2082 -0.0012 22 6 2.1981 -1.2003 -0.0005 23 17 1.3250 -2.7007 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.2597 2.8157 -1.0264 28 1 0.4895 2.3697 0.5151 29 1 2.0310 3.2597 0.5152 30 1 3.2121 3.3040 -1.6383 31 1 4.4431 5.4136 -1.6535 32 1 4.1310 8.0936 -1.0362 33 1 6.8404 4.0200 1.6488 34 1 5.6072 1.9118 1.6427 35 1 5.3624 -0.0272 -0.0114 36 1 4.1171 -2.1472 -0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245687357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = 6.041328 kcal Electronic energy + Delta-G solvation = -19199.419247 eV Core-core repulsion = 16251.450197 eV Total energy + Delta-G solvation = -2947.969051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85170 -39.14269 -37.39832 -35.73297 -34.42457 -33.44413 -31.35897 -30.81662 -28.64082 -27.36514 -26.74274 -23.52571 -22.73926 -21.74274 -21.27229 -19.26329 -17.54154 -17.22718 -16.91614 -16.53090 -15.76764 -15.50009 -15.05293 -14.85853 -14.40204 -14.03626 -13.94119 -13.87172 -13.69768 -13.45698 -13.41590 -13.13503 -13.01742 -12.81162 -12.58824 -12.34261 -12.12230 -11.99700 -11.93973 -11.58372 -11.47194 -11.23038 -11.05342 -9.70771 -9.54778 -9.43952 -8.90072 -8.67518 -6.33724 0.09215 0.39464 1.00620 1.20003 1.22365 1.38532 1.49324 1.54400 2.18865 2.59362 2.82122 3.70296 3.88080 3.90283 4.03185 4.18209 4.38882 4.43856 4.47503 4.60032 4.71210 4.73746 4.84681 4.94052 4.95226 5.02162 5.11066 5.13503 5.28033 5.30613 5.39481 5.40210 5.49368 5.68162 5.76565 5.87050 6.08300 6.09279 6.22961 6.34015 6.65679 6.89059 7.00528 8.26723 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.039344 B = 0.003547 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.504624 B = 7891.716109 C = 8405.048055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.090 4.090 4 C -0.109 4.109 5 C -0.008 4.008 6 C -0.190 4.190 7 C -0.073 4.073 8 C -0.193 4.193 9 C 0.089 3.911 10 C -0.493 4.493 11 H 0.078 0.922 12 C 0.037 3.963 13 N -0.814 5.814 14 Si 0.982 3.018 15 H -0.261 1.261 16 H -0.266 1.266 17 H -0.259 1.259 18 C -0.246 4.246 19 C -0.068 4.068 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.059 4.059 23 Cl -0.068 7.068 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.291 0.709 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -11.165 -0.179 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.090 4.090 4 C -0.165 4.165 5 C -0.008 4.008 6 C -0.192 4.192 7 C -0.091 4.091 8 C -0.212 4.212 9 C 0.086 3.914 10 C -0.522 4.522 11 H 0.096 0.904 12 C -0.179 4.179 13 N -0.438 5.438 14 Si 0.802 3.198 15 H -0.185 1.185 16 H -0.190 1.190 17 H -0.183 1.183 18 C -0.265 4.265 19 C -0.086 4.086 20 C -0.141 4.141 21 C -0.125 4.125 22 C -0.086 4.086 23 Cl -0.039 7.039 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.598 -11.137 -0.238 12.947 hybrid contribution 0.575 0.746 -0.139 0.952 sum -6.023 -10.391 -0.377 12.016 Atomic orbital electron populations 1.20953 0.88911 1.03985 1.03503 1.19706 0.97676 0.90353 1.00189 1.19936 0.92693 0.95163 1.01200 1.20867 0.99835 0.93397 1.02412 1.18993 0.92471 0.92775 0.96602 1.18226 1.02699 0.94735 1.03501 1.20619 0.97971 0.92920 0.97578 1.20941 1.01470 0.97219 1.01584 1.18010 0.91312 0.92742 0.89323 1.19869 1.01859 0.93793 1.36659 0.90397 1.26785 0.96038 1.02955 0.92138 1.69847 1.11818 1.30361 1.31820 0.85255 0.78741 0.76105 0.79683 1.18513 1.19045 1.18325 1.20838 1.05865 0.97039 1.02776 1.20564 0.94577 0.96223 0.97239 1.21317 1.00375 0.90858 1.01579 1.21068 0.91907 0.99095 1.00474 1.20847 0.92391 0.86591 1.08750 1.98318 1.76590 1.31932 1.97078 0.89930 0.90445 0.89988 0.91033 0.89603 0.92961 0.87880 0.88024 0.89834 0.88366 0.86960 0.84903 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.20 71.24 0.66 -1.85 16 2 C -0.08 -2.18 5.88 -19.88 -0.12 -2.30 16 3 C -0.09 -2.90 5.87 -19.61 -0.12 -3.02 16 4 C -0.11 -3.37 8.03 71.24 0.57 -2.80 16 5 C -0.01 -0.30 5.47 -20.03 -0.11 -0.41 16 6 C -0.19 -8.08 4.76 -19.87 -0.09 -8.17 16 7 C -0.07 -3.30 7.82 22.22 0.17 -3.12 16 8 C -0.19 -9.93 8.63 22.47 0.19 -9.74 16 9 C 0.09 4.70 5.57 -21.27 -0.12 4.59 16 10 C -0.49 -26.05 9.03 23.38 0.21 -25.84 16 11 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 12 C 0.04 1.83 5.13 85.28 0.44 2.27 16 13 N -0.81 -41.24 10.96 21.84 0.24 -41.00 16 14 Si 0.98 36.99 29.60 68.60 2.03 39.02 16 15 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 16 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 17 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 18 C -0.25 -11.92 9.73 22.47 0.22 -11.70 16 19 C -0.07 -2.96 9.44 22.22 0.21 -2.75 16 20 C -0.12 -3.85 9.51 22.52 0.21 -3.64 16 21 C -0.11 -2.88 9.81 22.26 0.22 -2.66 16 22 C -0.06 -1.59 6.32 22.41 0.14 -1.45 16 23 Cl -0.07 -1.53 27.27 -2.72 -0.07 -1.60 16 24 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 1.51 6.89 -2.39 -0.02 1.49 16 26 H 0.08 1.60 5.94 -2.39 -0.01 1.59 16 27 H 0.07 2.12 7.47 -2.39 -0.02 2.11 16 28 H 0.09 2.15 5.94 -2.39 -0.01 2.14 16 29 H 0.05 1.93 6.45 -2.38 -0.02 1.92 16 30 H 0.10 4.29 6.79 -2.91 -0.02 4.27 16 31 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 32 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 33 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 34 H 0.11 4.27 8.04 -2.91 -0.02 4.24 16 35 H 0.13 3.92 8.04 -2.91 -0.02 3.90 16 36 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -55.81 311.53 5.99 -49.82 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 1.10 Total: 26.34 kcal Atomic # 6 Polarization: -75.27 SS G_CDS: 2.69 Total: -72.58 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.24 Total: -41.00 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.60 kcal Total: -55.81 5.99 -49.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245687357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.865 kcal (2) G-P(sol) polarization free energy of solvation -55.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds