Wall clock time and date at job start Tue Mar 31 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37905 * 119.93409 * 2 1 4 4 C 1.50700 * 120.06786 * 359.97438 * 3 2 1 5 5 C 1.39652 * 119.86329 * 180.02562 * 3 2 1 6 6 C 1.47855 * 120.13505 * 179.97438 * 5 3 2 7 7 C 1.39180 * 120.33492 * 244.97489 * 6 5 3 8 8 C 1.38071 * 119.97852 * 180.02562 * 7 6 5 9 9 C 1.38935 * 120.67662 * 359.75055 * 8 7 6 10 10 C 1.36426 * 120.68873 * 0.51501 * 9 8 7 11 11 C 1.40754 * 119.98882 * 359.48395 * 10 9 8 12 12 C 1.40866 * 120.33268 * 180.23439 * 11 10 9 13 13 H 1.08003 * 120.00121 * 204.79034 * 12 11 10 14 14 C 1.40071 * 120.00147 * 24.79210 * 12 11 10 15 15 N 1.30781 * 119.99657 * 17.62896 * 14 12 11 16 16 Si 1.86792 * 120.00188 * 197.63154 * 14 12 11 17 17 H 1.48500 * 109.47317 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47456 * 119.99973 * 16 14 12 19 19 H 1.48503 * 109.47305 * 239.99821 * 16 14 12 20 20 C 1.39690 * 119.72759 * 0.24868 * 5 3 2 21 21 C 1.37866 * 119.86393 * 359.49731 * 20 5 3 22 22 C 1.38511 * 119.93207 * 180.02562 * 2 1 3 23 23 Cl 1.73604 * 119.86185 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47027 * 90.00268 * 1 2 3 25 25 H 1.08994 * 109.47551 * 209.99962 * 1 2 3 26 26 H 1.08998 * 109.47081 * 330.00281 * 1 2 3 27 27 H 1.08997 * 109.47381 * 270.02410 * 4 3 2 28 28 H 1.09000 * 109.46940 * 30.02581 * 4 3 2 29 29 H 1.09004 * 109.46707 * 150.02665 * 4 3 2 30 30 H 1.07996 * 120.00742 * 0.04912 * 7 6 5 31 31 H 1.07997 * 119.66145 * 179.97438 * 8 7 6 32 32 H 1.08004 * 119.65646 * 180.27224 * 9 8 7 33 33 H 1.07998 * 120.00337 * 179.77312 * 10 9 8 34 34 H 0.96996 * 119.99394 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.06686 * 179.74523 * 20 5 3 36 36 H 1.07991 * 119.93514 * 180.25317 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1951 0.0000 4 6 1.4417 2.5002 -0.0006 5 6 3.5916 1.1934 -0.0005 6 6 4.3355 2.4712 -0.0011 7 6 5.1279 2.8227 -1.0900 8 6 5.8198 4.0175 -1.0825 9 6 5.7310 4.8813 0.0021 10 6 4.9667 4.5617 1.0860 11 6 4.2492 3.3510 1.1085 12 6 3.4539 3.0159 2.2219 13 1 3.2352 1.9805 2.4374 14 6 2.9467 4.0257 3.0496 15 7 2.9066 5.2616 2.6237 16 14 2.3276 3.6072 4.7615 17 1 2.4805 2.1495 5.0006 18 1 3.1152 4.3600 5.7705 19 1 0.8944 3.9791 4.8743 20 6 4.2828 -0.0205 -0.0063 21 6 3.5836 -1.2087 -0.0010 22 6 2.1981 -1.2004 -0.0005 23 17 1.3247 -2.7007 -0.0019 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.2600 2.8145 -1.0283 28 1 0.4893 2.3701 0.5133 29 1 2.0309 3.2600 0.5129 30 1 5.2012 2.1614 -1.9406 31 1 6.4335 4.2851 -1.9300 32 1 6.2758 5.8138 -0.0114 33 1 4.9085 5.2397 1.9246 34 1 2.5557 5.9609 3.1970 35 1 5.3628 -0.0283 -0.0109 36 1 4.1168 -2.1478 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245687450.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:39 Heat of formation + Delta-G solvation = 18.488644 kcal Electronic energy + Delta-G solvation = -20034.109740 eV Core-core repulsion = 17086.680445 eV Total energy + Delta-G solvation = -2947.429295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.34359 -37.40071 -36.02557 -33.87752 -32.92269 -32.09711 -29.64766 -28.77493 -26.89039 -25.91715 -25.12772 -22.13232 -21.00669 -20.27352 -19.38317 -17.34117 -16.02287 -15.53537 -15.49165 -14.89867 -14.17546 -14.08114 -13.37324 -13.33642 -12.74534 -12.65283 -12.45648 -12.30478 -12.08966 -11.91684 -11.88805 -11.58469 -11.20724 -11.09991 -11.08017 -10.68791 -10.58758 -10.53461 -10.45903 -10.20770 -9.71346 -9.49708 -9.20405 -8.08471 -7.97423 -7.49551 -7.29217 -6.88432 -4.46451 1.69539 1.88344 2.55233 2.67715 2.90838 3.02013 3.07976 3.15683 3.84612 4.20669 4.51953 5.23393 5.25694 5.53566 5.55592 5.73478 5.87867 5.90447 6.03211 6.06159 6.16228 6.31782 6.36251 6.45142 6.49352 6.56321 6.61299 6.78054 6.91053 6.97438 7.12196 7.16389 7.27505 7.38889 7.48579 7.54054 7.81622 7.95645 8.02413 8.15632 8.51346 8.74686 8.84108 10.01748 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.006869 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.598748 B = 4075.233013 C = 5264.322798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.049 4.049 4 C -0.126 4.126 5 C 0.030 3.970 6 C -0.189 4.189 7 C -0.070 4.070 8 C -0.244 4.244 9 C -0.101 4.101 10 C -0.161 4.161 11 C 0.130 3.870 12 C -0.445 4.445 13 H 0.081 0.919 14 C 0.079 3.921 15 N -0.785 5.785 16 Si 0.900 3.100 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.273 1.273 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.052 4.052 23 Cl -0.095 7.095 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.282 0.718 35 H 0.124 0.876 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.643 -6.465 -2.352 7.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.050 4.050 4 C -0.182 4.182 5 C 0.030 3.970 6 C -0.191 4.191 7 C -0.088 4.088 8 C -0.263 4.263 9 C -0.119 4.119 10 C -0.180 4.180 11 C 0.127 3.873 12 C -0.473 4.473 13 H 0.099 0.901 14 C -0.141 4.141 15 N -0.409 5.409 16 Si 0.724 3.276 17 H -0.182 1.182 18 H -0.196 1.196 19 H -0.198 1.198 20 C -0.136 4.136 21 C -0.137 4.137 22 C -0.079 4.079 23 Cl -0.066 7.066 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.142 0.858 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.821 -6.357 -2.276 7.318 hybrid contribution -0.287 -0.296 0.751 0.856 sum -3.108 -6.653 -1.525 7.500 Atomic orbital electron populations 1.20858 0.91268 1.03008 1.02136 1.19462 0.96062 0.91048 1.02090 1.19880 0.93123 0.94081 0.97898 1.21120 0.99889 0.95849 1.01341 1.18800 0.91786 0.92906 0.93479 1.18475 1.07081 0.96778 0.96769 1.20519 0.96257 0.95923 0.96141 1.20259 1.08385 0.97626 1.00023 1.20474 0.99062 0.97554 0.94829 1.21061 0.98955 0.99346 0.98648 1.17462 0.89385 0.90177 0.90250 1.19530 1.26194 0.94445 1.07156 0.90088 1.25922 0.94077 0.94400 0.99652 1.69800 1.33146 1.01573 1.36376 0.86364 0.78901 0.80456 0.81880 1.18162 1.19594 1.19790 1.21240 0.99681 0.91088 1.01620 1.20746 0.91654 0.98575 1.02738 1.20642 0.91950 0.85421 1.09864 1.98295 1.77224 1.33824 1.97293 0.91464 0.91603 0.90823 0.92675 0.92643 0.86708 0.89334 0.89479 0.89538 0.86311 0.90652 0.85809 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.20 36.00 0.33 -1.39 16 2 C -0.09 -1.52 5.88 -104.64 -0.62 -2.14 16 3 C -0.05 -0.98 5.32 -104.22 -0.55 -1.53 16 4 C -0.13 -2.48 8.86 36.01 0.32 -2.16 16 5 C 0.03 0.63 4.38 -104.89 -0.46 0.17 16 6 C -0.19 -4.29 4.66 -104.22 -0.49 -4.77 16 7 C -0.07 -1.51 9.73 -39.29 -0.38 -1.90 16 8 C -0.24 -5.22 10.03 -39.38 -0.40 -5.62 16 9 C -0.10 -2.25 9.96 -39.98 -0.40 -2.65 16 10 C -0.16 -3.91 8.64 -39.28 -0.34 -4.25 16 11 C 0.13 3.17 4.54 -106.56 -0.48 2.68 16 12 C -0.44 -10.77 6.18 -37.90 -0.23 -11.01 16 13 H 0.08 2.01 7.07 -52.48 -0.37 1.64 16 14 C 0.08 1.82 5.14 -17.31 -0.09 1.73 16 15 N -0.78 -18.59 10.96 55.55 0.61 -17.98 16 16 Si 0.90 17.88 29.60 -169.99 -5.03 12.85 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.12 -2.18 9.74 -39.18 -0.38 -2.56 16 21 C -0.12 -1.99 9.81 -39.60 -0.39 -2.38 16 22 C -0.05 -0.89 6.32 -39.37 -0.25 -1.14 16 23 Cl -0.09 -1.39 27.27 -51.86 -1.41 -2.80 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.91 6.89 -51.93 -0.36 0.55 16 26 H 0.07 1.06 5.94 -51.93 -0.31 0.76 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.98 5.94 -51.93 -0.31 0.67 16 29 H 0.11 2.63 4.34 -51.93 -0.23 2.41 16 30 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.12 2.97 6.17 -52.49 -0.32 2.65 16 34 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 35 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -24.47 308.75 -9.98 -34.45 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -3.99 Total: 7.74 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: -4.80 Total: -38.90 kcal Atomic # 7 Polarization: -18.59 SS G_CDS: 0.61 Total: -17.98 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.41 Total: -2.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -24.47 -9.98 -34.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245687450.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.935 kcal (2) G-P(sol) polarization free energy of solvation -24.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds