Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37905 * 119.93409 * 2 1 4 4 C 1.50700 * 120.06786 * 359.97438 * 3 2 1 5 5 C 1.39652 * 119.86329 * 180.02562 * 3 2 1 6 6 C 1.47855 * 120.13505 * 179.97438 * 5 3 2 7 7 C 1.39180 * 120.33492 * 244.97489 * 6 5 3 8 8 C 1.38071 * 119.97852 * 180.02562 * 7 6 5 9 9 C 1.38935 * 120.67662 * 359.75055 * 8 7 6 10 10 C 1.36426 * 120.68873 * 0.51501 * 9 8 7 11 11 C 1.40754 * 119.98882 * 359.48395 * 10 9 8 12 12 C 1.40866 * 120.33268 * 180.23439 * 11 10 9 13 13 H 1.08003 * 120.00121 * 204.79034 * 12 11 10 14 14 C 1.40071 * 120.00147 * 24.79210 * 12 11 10 15 15 N 1.30781 * 119.99657 * 17.62896 * 14 12 11 16 16 Si 1.86792 * 120.00188 * 197.63154 * 14 12 11 17 17 H 1.48500 * 109.47317 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47456 * 119.99973 * 16 14 12 19 19 H 1.48503 * 109.47305 * 239.99821 * 16 14 12 20 20 C 1.39690 * 119.72759 * 0.24868 * 5 3 2 21 21 C 1.37866 * 119.86393 * 359.49731 * 20 5 3 22 22 C 1.38511 * 119.93207 * 180.02562 * 2 1 3 23 23 Cl 1.73604 * 119.86185 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47027 * 90.00268 * 1 2 3 25 25 H 1.08994 * 109.47551 * 209.99962 * 1 2 3 26 26 H 1.08998 * 109.47081 * 330.00281 * 1 2 3 27 27 H 1.08997 * 109.47381 * 270.02410 * 4 3 2 28 28 H 1.09000 * 109.46940 * 30.02581 * 4 3 2 29 29 H 1.09004 * 109.46707 * 150.02665 * 4 3 2 30 30 H 1.07996 * 120.00742 * 0.04912 * 7 6 5 31 31 H 1.07997 * 119.66145 * 179.97438 * 8 7 6 32 32 H 1.08004 * 119.65646 * 180.27224 * 9 8 7 33 33 H 1.07998 * 120.00337 * 179.77312 * 10 9 8 34 34 H 0.96996 * 119.99394 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.06686 * 179.74523 * 20 5 3 36 36 H 1.07991 * 119.93514 * 180.25317 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1951 0.0000 4 6 1.4417 2.5002 -0.0006 5 6 3.5916 1.1934 -0.0005 6 6 4.3355 2.4712 -0.0011 7 6 5.1279 2.8227 -1.0900 8 6 5.8198 4.0175 -1.0825 9 6 5.7310 4.8813 0.0021 10 6 4.9667 4.5617 1.0860 11 6 4.2492 3.3510 1.1085 12 6 3.4539 3.0159 2.2219 13 1 3.2352 1.9805 2.4374 14 6 2.9467 4.0257 3.0496 15 7 2.9066 5.2616 2.6237 16 14 2.3276 3.6072 4.7615 17 1 2.4805 2.1495 5.0006 18 1 3.1152 4.3600 5.7705 19 1 0.8944 3.9791 4.8743 20 6 4.2828 -0.0205 -0.0063 21 6 3.5836 -1.2087 -0.0010 22 6 2.1981 -1.2004 -0.0005 23 17 1.3247 -2.7007 -0.0019 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.2600 2.8145 -1.0283 28 1 0.4893 2.3701 0.5133 29 1 2.0309 3.2600 0.5129 30 1 5.2012 2.1614 -1.9406 31 1 6.4335 4.2851 -1.9300 32 1 6.2758 5.8138 -0.0114 33 1 4.9085 5.2397 1.9246 34 1 2.5557 5.9609 3.1970 35 1 5.3628 -0.0283 -0.0109 36 1 4.1168 -2.1478 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245687450.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = 10.870371 kcal Electronic energy + Delta-G solvation = -20034.440093 eV Core-core repulsion = 17086.680445 eV Total energy + Delta-G solvation = -2947.759648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81600 -39.02485 -37.31708 -35.61249 -34.30864 -33.61894 -31.39896 -30.35270 -28.36275 -27.32489 -26.82257 -23.69931 -22.73481 -21.69086 -20.96947 -19.10800 -17.49370 -17.11901 -16.92296 -16.48276 -15.79735 -15.56163 -14.92554 -14.83910 -14.38965 -14.11679 -13.83779 -13.81675 -13.57451 -13.33112 -13.21071 -13.16284 -12.86178 -12.69802 -12.63313 -12.25052 -12.12065 -12.01101 -11.89265 -11.54899 -11.38990 -11.18553 -10.93799 -9.52481 -9.45854 -9.26783 -8.94264 -8.60202 -6.26573 0.25070 0.48197 0.99765 1.17000 1.24652 1.38435 1.49448 1.51941 2.19745 2.73464 2.80183 3.73043 3.95662 3.97296 4.12461 4.30057 4.48494 4.51197 4.60398 4.67568 4.75165 4.77331 4.90559 4.93010 5.04379 5.08551 5.17030 5.23179 5.34352 5.37203 5.45604 5.53495 5.66059 5.74114 5.90132 5.99172 6.12118 6.20126 6.25858 6.39851 6.72582 6.96641 7.07013 8.31210 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.006869 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.598748 B = 4075.233013 C = 5264.322798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.066 4.066 4 C -0.120 4.120 5 C 0.002 3.998 6 C -0.188 4.188 7 C -0.080 4.080 8 C -0.243 4.243 9 C -0.108 4.108 10 C -0.187 4.187 11 C 0.107 3.893 12 C -0.459 4.459 13 H 0.067 0.933 14 C 0.047 3.953 15 N -0.811 5.811 16 Si 0.958 3.042 17 H -0.264 1.264 18 H -0.265 1.265 19 H -0.264 1.264 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.056 4.056 23 Cl -0.069 7.069 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.289 0.711 35 H 0.132 0.868 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.225 -8.205 -2.778 9.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.067 4.067 4 C -0.176 4.176 5 C 0.002 3.998 6 C -0.190 4.190 7 C -0.098 4.098 8 C -0.262 4.262 9 C -0.126 4.126 10 C -0.207 4.207 11 C 0.104 3.896 12 C -0.488 4.488 13 H 0.085 0.915 14 C -0.169 4.169 15 N -0.437 5.437 16 Si 0.780 3.220 17 H -0.188 1.188 18 H -0.190 1.190 19 H -0.189 1.189 20 C -0.142 4.142 21 C -0.131 4.131 22 C -0.082 4.082 23 Cl -0.041 7.041 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.401 -8.095 -2.712 9.190 hybrid contribution -0.102 0.144 0.774 0.794 sum -3.503 -7.951 -1.939 8.902 Atomic orbital electron populations 1.20908 0.89288 1.03571 1.03326 1.19731 0.97583 0.90607 1.01129 1.19914 0.92973 0.94730 0.99036 1.20990 1.00004 0.95293 1.01312 1.18873 0.92409 0.92847 0.95664 1.18761 1.06623 0.97303 0.96297 1.20835 0.96024 0.96419 0.96539 1.20597 1.08101 0.97188 1.00356 1.20725 0.98754 0.98562 0.94558 1.21052 1.00641 0.99774 0.99210 1.17723 0.89860 0.90811 0.91158 1.19450 1.27247 0.93936 1.08178 0.91467 1.26504 0.94012 0.94135 1.02276 1.69837 1.34003 1.02308 1.37529 0.85496 0.78769 0.79638 0.78079 1.18826 1.19020 1.18909 1.21346 1.00210 0.91005 1.01669 1.21018 0.91818 0.99014 1.01244 1.20806 0.92364 0.86350 1.08717 1.98304 1.76665 1.31971 1.97115 0.89857 0.90499 0.90765 0.92221 0.91244 0.90040 0.87293 0.86781 0.87620 0.87950 0.90060 0.85050 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.13 9.20 71.23 0.66 -2.48 16 2 C -0.09 -3.03 5.88 -19.88 -0.12 -3.15 16 3 C -0.07 -2.59 5.32 -19.60 -0.10 -2.70 16 4 C -0.12 -4.76 8.86 71.24 0.63 -4.13 16 5 C 0.00 0.09 4.38 -20.04 -0.09 0.01 16 6 C -0.19 -8.63 4.66 -19.61 -0.09 -8.72 16 7 C -0.08 -3.42 9.73 22.46 0.22 -3.20 16 8 C -0.24 -10.22 10.03 22.40 0.22 -9.99 16 9 C -0.11 -4.83 9.96 22.01 0.22 -4.62 16 10 C -0.19 -9.41 8.64 22.46 0.19 -9.22 16 11 C 0.11 5.38 4.54 -21.12 -0.10 5.29 16 12 C -0.46 -23.01 6.18 23.36 0.14 -22.86 16 13 H 0.07 3.45 7.07 -2.91 -0.02 3.43 16 14 C 0.05 2.25 5.14 85.29 0.44 2.69 16 15 N -0.81 -39.68 10.96 21.85 0.24 -39.44 16 16 Si 0.96 37.15 29.60 68.60 2.03 39.18 16 17 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 18 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 C -0.12 -4.46 9.74 22.53 0.22 -4.24 16 21 C -0.11 -3.52 9.81 22.26 0.22 -3.30 16 22 C -0.06 -1.77 6.32 22.41 0.14 -1.63 16 23 Cl -0.07 -1.82 27.27 -2.72 -0.07 -1.89 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 1.91 6.89 -2.39 -0.02 1.90 16 26 H 0.07 2.01 5.94 -2.39 -0.01 2.00 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.07 2.46 5.94 -2.39 -0.01 2.45 16 29 H 0.08 3.86 4.34 -2.38 -0.01 3.85 16 30 H 0.11 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.11 4.11 8.06 -2.91 -0.02 4.08 16 32 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.10 5.38 6.17 -2.91 -0.02 5.36 16 34 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 35 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -52.88 308.75 6.11 -46.77 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 1.10 Total: 27.64 kcal Atomic # 6 Polarization: -75.06 SS G_CDS: 2.81 Total: -72.25 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.24 Total: -39.44 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Total: -52.88 6.11 -46.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245687450.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.641 kcal (2) G-P(sol) polarization free energy of solvation -52.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds