Wall clock time and date at job start Tue Mar 31 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38316 * 119.88419 * 2 1 4 4 C 1.38005 * 120.13602 * 180.02562 * 3 2 1 5 5 C 1.39360 * 119.89892 * 0.27693 * 4 3 2 6 6 C 1.48419 * 120.11008 * 179.74420 * 5 4 3 7 7 C 1.39721 * 119.99896 * 235.98724 * 6 5 4 8 8 C 1.38393 * 120.37510 * 179.97438 * 7 6 5 9 9 C 1.37713 * 120.38042 * 359.97265 * 8 7 6 10 10 C 1.40744 * 119.99266 * 0.02680 * 9 8 7 11 11 C 1.41431 * 120.19119 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99618 * 24.81167 * 11 10 9 13 13 C 1.39931 * 119.99881 * 204.81189 * 11 10 9 14 14 N 1.30824 * 120.00369 * 17.73918 * 13 11 10 15 15 Si 1.86801 * 119.99434 * 197.73997 * 13 11 10 16 16 H 1.48496 * 109.47515 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46883 * 120.00214 * 15 13 11 18 18 H 1.48500 * 109.47086 * 239.99755 * 15 13 11 19 19 C 1.38734 * 119.99615 * 55.71111 * 6 5 4 20 20 C 1.39287 * 119.77395 * 359.49267 * 5 4 3 21 21 C 1.50702 * 120.06648 * 180.25339 * 20 5 4 22 22 C 1.38152 * 119.86577 * 0.48376 * 20 5 4 23 23 Cl 1.73606 * 119.95396 * 179.74639 * 22 20 5 24 24 H 1.08995 * 109.47341 * 90.00438 * 1 2 3 25 25 H 1.09001 * 109.46737 * 210.00019 * 1 2 3 26 26 H 1.09005 * 109.47064 * 329.99609 * 1 2 3 27 27 H 1.08007 * 119.93305 * 0.02562 * 3 2 1 28 28 H 1.07994 * 120.05321 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.81298 * 359.97438 * 7 6 5 30 30 H 1.08001 * 119.80613 * 179.97438 * 8 7 6 31 31 H 1.08010 * 120.00775 * 180.02562 * 9 8 7 32 32 H 0.96999 * 120.00130 * 180.02562 * 14 13 11 33 33 H 1.08000 * 120.18370 * 0.02562 * 19 6 5 34 34 H 1.09004 * 109.47132 * 269.84834 * 21 20 5 35 35 H 1.09002 * 109.47105 * 29.84378 * 21 20 5 36 36 H 1.09000 * 109.47037 * 149.84395 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.1992 0.0000 4 6 3.5763 1.2053 -0.0005 5 6 4.2762 0.0003 -0.0069 6 6 5.7604 0.0013 -0.0132 7 6 6.4552 -0.6722 -1.0211 8 6 7.8390 -0.6758 -1.0349 9 6 8.5470 -0.0152 -0.0557 10 6 7.8631 0.6684 0.9670 11 6 8.5860 1.3487 1.9745 12 1 9.5900 1.6948 1.7783 13 6 8.0003 1.5734 3.2253 14 7 6.9546 0.8781 3.5923 15 14 8.7115 2.8661 4.3709 16 1 9.8847 3.5081 3.7254 17 1 7.6795 3.8946 4.6580 18 1 9.1359 2.2229 5.6403 19 6 6.4577 0.6759 0.9784 20 6 3.5782 -1.2051 -0.0020 21 6 4.3286 -2.5120 -0.0031 22 6 2.1967 -1.2001 -0.0010 23 17 1.3245 -2.7011 -0.0015 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6532 2.1329 0.0004 28 1 4.1130 2.1424 -0.0010 29 1 5.9092 -1.1929 -1.7939 30 1 8.3667 -1.1997 -1.8181 31 1 9.6269 -0.0215 -0.0725 32 1 6.5484 1.0341 4.4592 33 1 5.9236 1.2009 1.7565 34 1 4.5027 -2.8302 -1.0310 35 1 5.2847 -2.3825 0.5041 36 1 3.7410 -3.2687 0.5169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245824701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:37 Heat of formation + Delta-G solvation = 13.577917 kcal Electronic energy + Delta-G solvation = -19470.676265 eV Core-core repulsion = 16523.034026 eV Total energy + Delta-G solvation = -2947.642240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.47956 -37.39607 -36.15941 -34.08127 -33.19303 -31.61814 -29.83058 -29.33675 -26.91386 -25.84379 -25.24648 -22.08281 -21.03693 -20.79011 -19.58636 -17.40325 -16.00949 -15.63241 -15.09776 -14.74433 -14.63438 -14.19106 -13.66929 -13.36529 -13.13422 -12.91890 -12.62903 -12.50707 -12.28588 -11.83655 -11.79876 -11.66089 -11.36197 -11.14216 -11.04561 -10.99165 -10.86429 -10.57883 -10.45408 -10.41581 -9.67924 -9.53584 -9.22159 -8.31460 -8.28281 -7.45453 -7.25985 -6.79349 -4.40341 1.47434 1.57959 2.37994 2.72738 2.91988 3.05877 3.10676 3.17633 3.90743 3.97995 4.56540 4.96199 5.00949 5.32181 5.42783 5.54320 5.63431 5.65513 5.74186 5.84273 6.02177 6.07974 6.11179 6.22576 6.28769 6.46265 6.56837 6.62239 6.71353 6.79429 6.94650 7.01618 7.14390 7.21796 7.30036 7.51143 7.80699 7.97899 7.98673 8.21570 8.55118 8.84198 8.89027 10.15123 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.004903 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.748967 B = 5709.423428 C = 6402.242200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.101 4.101 5 C -0.003 4.003 6 C -0.049 4.049 7 C -0.219 4.219 8 C -0.096 4.096 9 C -0.220 4.220 10 C 0.107 3.893 11 C -0.464 4.464 12 H 0.078 0.922 13 C 0.077 3.923 14 N -0.792 5.792 15 Si 0.905 3.095 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.138 4.138 20 C -0.064 4.064 21 C -0.114 4.114 22 C -0.038 4.038 23 Cl -0.081 7.081 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.280 0.720 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 -1.439 -4.245 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.119 4.119 5 C -0.003 4.003 6 C -0.050 4.050 7 C -0.239 4.239 8 C -0.114 4.114 9 C -0.240 4.240 10 C 0.105 3.895 11 C -0.494 4.494 12 H 0.097 0.903 13 C -0.141 4.141 14 N -0.417 5.417 15 Si 0.729 3.271 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.200 1.200 19 C -0.157 4.157 20 C -0.065 4.065 21 C -0.170 4.170 22 C -0.064 4.064 23 Cl -0.053 7.053 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.054 -1.619 -4.031 10.952 hybrid contribution 0.221 0.420 0.649 0.804 sum -9.833 -1.200 -3.382 10.467 Atomic orbital electron populations 1.20786 0.90935 1.02907 1.02262 1.19607 0.96133 0.91449 1.02234 1.20812 0.94046 0.96607 1.02074 1.21364 0.93591 0.98143 0.98782 1.18939 0.93852 0.91216 0.96318 1.18350 0.88763 1.00803 0.97059 1.20321 0.93584 1.08836 1.01140 1.20450 0.93726 0.99493 0.97778 1.21047 0.97749 1.05222 0.99958 1.17540 0.91690 0.89066 0.91207 1.19593 1.01404 1.32386 0.95969 0.90345 1.25890 0.94281 0.95133 0.98808 1.69821 1.18760 1.32731 1.20424 0.86310 0.80081 0.80982 0.79680 1.18387 1.19697 1.19992 1.21398 0.94193 1.01961 0.98154 1.19799 0.90867 0.96348 0.99451 1.20867 1.00915 0.92886 1.02351 1.20512 0.91453 0.85984 1.08445 1.98302 1.76450 1.33444 1.97056 0.91296 0.91247 0.91549 0.85690 0.85412 0.89297 0.89229 0.88973 0.90866 0.86136 0.91237 0.89853 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.61 36.01 0.35 -0.95 16 2 C -0.09 -1.40 5.89 -104.53 -0.62 -2.01 16 3 C -0.12 -1.77 9.68 -39.64 -0.38 -2.16 16 4 C -0.10 -1.79 9.61 -39.25 -0.38 -2.17 16 5 C 0.00 -0.06 5.40 -104.90 -0.57 -0.62 16 6 C -0.05 -1.11 4.47 -104.97 -0.47 -1.58 16 7 C -0.22 -4.72 8.17 -38.97 -0.32 -5.04 16 8 C -0.10 -2.10 10.01 -39.72 -0.40 -2.49 16 9 C -0.22 -5.26 9.78 -38.83 -0.38 -5.64 16 10 C 0.11 2.78 5.57 -106.87 -0.59 2.18 16 11 C -0.46 -12.03 9.05 -37.73 -0.34 -12.37 16 12 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 13 C 0.08 1.89 5.13 -17.35 -0.09 1.80 16 14 N -0.79 -20.17 10.99 55.55 0.61 -19.56 16 15 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 16 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 19 C -0.14 -3.45 8.24 -38.53 -0.32 -3.77 16 20 C -0.06 -1.17 5.88 -104.26 -0.61 -1.78 16 21 C -0.11 -1.95 8.23 36.01 0.30 -1.66 16 22 C -0.04 -0.61 6.30 -39.55 -0.25 -0.86 16 23 Cl -0.08 -1.15 25.62 -51.86 -1.33 -2.48 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.79 6.89 -51.93 -0.36 0.43 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 28 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 29 H 0.09 1.75 7.51 -52.49 -0.39 1.36 16 30 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 32 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 33 H 0.12 3.15 6.20 -52.49 -0.33 2.83 16 34 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 35 H 0.08 1.61 6.65 -51.93 -0.35 1.27 16 36 H 0.06 0.99 6.92 -51.93 -0.36 0.63 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -26.40 315.22 -10.34 -36.74 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.27 Total: 6.32 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: -5.07 Total: -39.10 kcal Atomic # 7 Polarization: -20.17 SS G_CDS: 0.61 Total: -19.56 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.33 Total: -2.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.40 -10.34 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245824701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.316 kcal (2) G-P(sol) polarization free energy of solvation -26.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds