Wall clock time and date at job start Tue Mar 31 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38316 * 119.88419 * 2 1 4 4 C 1.38005 * 120.13602 * 180.02562 * 3 2 1 5 5 C 1.39360 * 119.89892 * 0.27693 * 4 3 2 6 6 C 1.48419 * 120.11008 * 179.74420 * 5 4 3 7 7 C 1.39721 * 119.99896 * 235.98724 * 6 5 4 8 8 C 1.38393 * 120.37510 * 179.97438 * 7 6 5 9 9 C 1.37713 * 120.38042 * 359.97265 * 8 7 6 10 10 C 1.40744 * 119.99266 * 0.02680 * 9 8 7 11 11 C 1.41431 * 120.19119 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99618 * 24.81167 * 11 10 9 13 13 C 1.39931 * 119.99881 * 204.81189 * 11 10 9 14 14 N 1.30824 * 120.00369 * 17.73918 * 13 11 10 15 15 Si 1.86801 * 119.99434 * 197.73997 * 13 11 10 16 16 H 1.48496 * 109.47515 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46883 * 120.00214 * 15 13 11 18 18 H 1.48500 * 109.47086 * 239.99755 * 15 13 11 19 19 C 1.38734 * 119.99615 * 55.71111 * 6 5 4 20 20 C 1.39287 * 119.77395 * 359.49267 * 5 4 3 21 21 C 1.50702 * 120.06648 * 180.25339 * 20 5 4 22 22 C 1.38152 * 119.86577 * 0.48376 * 20 5 4 23 23 Cl 1.73606 * 119.95396 * 179.74639 * 22 20 5 24 24 H 1.08995 * 109.47341 * 90.00438 * 1 2 3 25 25 H 1.09001 * 109.46737 * 210.00019 * 1 2 3 26 26 H 1.09005 * 109.47064 * 329.99609 * 1 2 3 27 27 H 1.08007 * 119.93305 * 0.02562 * 3 2 1 28 28 H 1.07994 * 120.05321 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.81298 * 359.97438 * 7 6 5 30 30 H 1.08001 * 119.80613 * 179.97438 * 8 7 6 31 31 H 1.08010 * 120.00775 * 180.02562 * 9 8 7 32 32 H 0.96999 * 120.00130 * 180.02562 * 14 13 11 33 33 H 1.08000 * 120.18370 * 0.02562 * 19 6 5 34 34 H 1.09004 * 109.47132 * 269.84834 * 21 20 5 35 35 H 1.09002 * 109.47105 * 29.84378 * 21 20 5 36 36 H 1.09000 * 109.47037 * 149.84395 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.1992 0.0000 4 6 3.5763 1.2053 -0.0005 5 6 4.2762 0.0003 -0.0069 6 6 5.7604 0.0013 -0.0132 7 6 6.4552 -0.6722 -1.0211 8 6 7.8390 -0.6758 -1.0349 9 6 8.5470 -0.0152 -0.0557 10 6 7.8631 0.6684 0.9670 11 6 8.5860 1.3487 1.9745 12 1 9.5900 1.6948 1.7783 13 6 8.0003 1.5734 3.2253 14 7 6.9546 0.8781 3.5923 15 14 8.7115 2.8661 4.3709 16 1 9.8847 3.5081 3.7254 17 1 7.6795 3.8946 4.6580 18 1 9.1359 2.2229 5.6403 19 6 6.4577 0.6759 0.9784 20 6 3.5782 -1.2051 -0.0020 21 6 4.3286 -2.5120 -0.0031 22 6 2.1967 -1.2001 -0.0010 23 17 1.3245 -2.7011 -0.0015 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6532 2.1329 0.0004 28 1 4.1130 2.1424 -0.0010 29 1 5.9092 -1.1929 -1.7939 30 1 8.3667 -1.1997 -1.8181 31 1 9.6269 -0.0215 -0.0725 32 1 6.5484 1.0341 4.4592 33 1 5.9236 1.2009 1.7565 34 1 4.5027 -2.8302 -1.0310 35 1 5.2847 -2.3825 0.5041 36 1 3.7410 -3.2687 0.5169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245824701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:37 Heat of formation + Delta-G solvation = 3.931085 kcal Electronic energy + Delta-G solvation = -19471.094583 eV Core-core repulsion = 16523.034026 eV Total energy + Delta-G solvation = -2948.060558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85312 -39.07586 -37.38780 -35.74536 -34.69279 -32.98012 -31.56429 -30.94704 -28.20025 -27.27087 -27.02289 -23.51676 -22.62928 -22.42489 -21.07410 -19.17800 -17.59833 -16.95980 -16.72408 -16.48908 -15.91921 -15.52954 -15.25781 -14.99098 -14.46830 -14.31951 -14.06632 -13.78555 -13.69592 -13.39441 -13.13918 -12.97297 -12.92187 -12.77214 -12.60438 -12.33323 -12.24123 -12.16505 -12.05623 -11.69579 -11.44317 -11.24460 -11.04676 -9.76585 -9.58179 -9.31767 -8.92179 -8.62587 -6.34718 0.11475 0.26352 0.98196 1.09167 1.21213 1.37803 1.50275 1.52957 2.20585 2.60569 2.76564 3.70376 3.75374 3.81343 4.00673 4.12505 4.35415 4.49815 4.57484 4.64552 4.66638 4.76472 4.78727 4.82766 4.84135 4.99155 5.13944 5.15705 5.27774 5.30036 5.31957 5.41609 5.45007 5.63964 5.68367 5.89387 6.00035 6.10086 6.17792 6.37288 6.67532 6.94359 7.01597 8.33429 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.004903 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.748967 B = 5709.423428 C = 6402.242200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.085 4.085 3 C -0.111 4.111 4 C -0.112 4.112 5 C -0.039 4.039 6 C -0.041 4.041 7 C -0.216 4.216 8 C -0.095 4.095 9 C -0.240 4.240 10 C 0.078 3.922 11 C -0.502 4.502 12 H 0.075 0.925 13 C 0.038 3.962 14 N -0.825 5.825 15 Si 0.978 3.022 16 H -0.258 1.258 17 H -0.264 1.264 18 H -0.267 1.267 19 C -0.163 4.163 20 C -0.076 4.076 21 C -0.108 4.108 22 C -0.047 4.047 23 Cl -0.061 7.061 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.160 0.840 28 H 0.122 0.878 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.286 0.714 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 -1.404 -4.802 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.129 4.129 4 C -0.130 4.130 5 C -0.040 4.040 6 C -0.042 4.042 7 C -0.235 4.235 8 C -0.112 4.112 9 C -0.259 4.259 10 C 0.075 3.925 11 C -0.531 4.531 12 H 0.093 0.907 13 C -0.177 4.177 14 N -0.451 5.451 15 Si 0.799 3.201 16 H -0.181 1.181 17 H -0.189 1.189 18 H -0.192 1.192 19 C -0.183 4.183 20 C -0.077 4.077 21 C -0.164 4.164 22 C -0.074 4.074 23 Cl -0.032 7.032 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.177 0.823 28 H 0.140 0.860 29 H 0.129 0.871 30 H 0.141 0.859 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.153 -1.598 -4.605 13.094 hybrid contribution 0.722 0.302 0.709 1.056 sum -11.431 -1.297 -3.895 12.146 Atomic orbital electron populations 1.20886 0.88023 1.04129 1.03730 1.20092 0.98184 0.90681 0.99654 1.21153 0.92884 0.98328 1.00524 1.21455 0.95048 0.97279 0.99268 1.18913 0.92551 0.92867 0.99622 1.18604 0.90658 0.99005 0.95902 1.20645 0.93749 1.08055 1.01094 1.20808 0.94068 0.98611 0.97762 1.21236 0.98251 1.05971 1.00465 1.17907 0.92488 0.89906 0.92150 1.19825 1.01775 1.34287 0.97222 0.90719 1.26698 0.94475 0.96628 0.99907 1.69890 1.20029 1.34029 1.21164 0.85223 0.79343 0.78115 0.77440 1.18127 1.18905 1.19167 1.21279 0.94073 1.03901 0.99031 1.19879 0.91995 0.95895 0.99948 1.20802 0.99566 0.93105 1.02939 1.20642 0.91008 0.87539 1.08172 1.98306 1.75721 1.32225 1.96939 0.89512 0.90997 0.89448 0.82281 0.85989 0.87078 0.85936 0.88467 0.90318 0.88175 0.89916 0.92756 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.61 71.24 0.68 -1.42 16 2 C -0.09 -2.31 5.89 -19.80 -0.12 -2.42 16 3 C -0.11 -3.10 9.68 22.23 0.22 -2.89 16 4 C -0.11 -3.98 9.61 22.48 0.22 -3.76 16 5 C -0.04 -1.57 5.40 -20.04 -0.11 -1.68 16 6 C -0.04 -1.91 4.47 -20.09 -0.09 -2.00 16 7 C -0.22 -9.30 8.17 22.67 0.19 -9.11 16 8 C -0.09 -4.10 10.01 22.18 0.22 -3.88 16 9 C -0.24 -11.80 9.78 22.76 0.22 -11.57 16 10 C 0.08 4.22 5.57 -21.32 -0.12 4.10 16 11 C -0.50 -27.27 9.05 23.47 0.21 -27.06 16 12 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 13 C 0.04 1.91 5.13 85.25 0.44 2.35 16 14 N -0.83 -43.75 10.99 21.82 0.24 -43.51 16 15 Si 0.98 38.53 29.59 68.60 2.03 40.56 16 16 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 18 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 19 C -0.16 -8.60 8.24 22.95 0.19 -8.41 16 20 C -0.08 -2.74 5.88 -19.63 -0.12 -2.86 16 21 C -0.11 -3.64 8.23 71.24 0.59 -3.06 16 22 C -0.05 -1.45 6.30 22.29 0.14 -1.31 16 23 Cl -0.06 -1.58 25.62 -2.72 -0.07 -1.64 16 24 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.36 6.89 -2.39 -0.02 1.34 16 26 H 0.09 1.33 8.08 -2.38 -0.02 1.31 16 27 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 29 H 0.11 4.23 7.51 -2.91 -0.02 4.21 16 30 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 32 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 33 H 0.10 5.59 6.20 -2.91 -0.02 5.57 16 34 H 0.08 2.51 7.85 -2.38 -0.02 2.49 16 35 H 0.05 2.14 6.65 -2.39 -0.02 2.12 16 36 H 0.08 2.31 6.92 -2.39 -0.02 2.29 16 Total: -1.00 -59.41 315.22 6.05 -53.36 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 1.09 Total: 26.22 kcal Atomic # 6 Polarization: -77.74 SS G_CDS: 2.76 Total: -74.98 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.24 Total: -43.51 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.07 Total: -1.64 kcal Total: -59.41 6.05 -53.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245824701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.289 kcal (2) G-P(sol) polarization free energy of solvation -59.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds