Wall clock time and date at job start Tue Mar 31 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38397 * 119.85269 * 2 1 4 4 C 1.37922 * 120.16095 * 179.71932 * 3 2 1 5 5 C 1.39666 * 119.87380 * 0.57731 * 4 3 2 6 6 C 1.47877 * 120.14053 * 179.72119 * 5 4 3 7 7 C 1.39159 * 120.33273 * 64.70504 * 6 5 4 8 8 C 1.38088 * 119.98592 * 180.02562 * 7 6 5 9 9 C 1.38933 * 120.66963 * 359.74541 * 8 7 6 10 10 C 1.36435 * 120.68275 * 0.51406 * 9 8 7 11 11 C 1.40743 * 119.98787 * 359.48983 * 10 9 8 12 12 C 1.40880 * 120.32806 * 180.23482 * 11 10 9 13 13 H 1.08001 * 119.99957 * 204.78915 * 12 11 10 14 14 C 1.40071 * 120.00380 * 24.78957 * 12 11 10 15 15 N 1.30773 * 119.99887 * 17.61807 * 14 12 11 16 16 Si 1.86801 * 120.00056 * 197.61824 * 14 12 11 17 17 H 1.48499 * 109.47172 * 90.00219 * 16 14 12 18 18 H 1.48504 * 109.46990 * 209.99704 * 16 14 12 19 19 H 1.48496 * 109.47379 * 329.99425 * 16 14 12 20 20 C 1.39611 * 119.71764 * 359.44498 * 5 4 3 21 21 C 1.50699 * 120.08149 * 180.27304 * 20 5 4 22 22 C 1.38068 * 119.83281 * 0.25448 * 20 5 4 23 23 Cl 1.73599 * 119.93568 * 179.97438 * 22 20 5 24 24 H 1.09005 * 109.47126 * 269.97451 * 1 2 3 25 25 H 1.08994 * 109.47598 * 29.97861 * 1 2 3 26 26 H 1.09002 * 109.46826 * 149.97952 * 1 2 3 27 27 H 1.08000 * 119.92121 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.06091 * 180.27691 * 4 3 2 29 29 H 1.08005 * 120.01016 * 0.03832 * 7 6 5 30 30 H 1.08001 * 119.66662 * 179.97438 * 8 7 6 31 31 H 1.08003 * 119.65247 * 180.25270 * 9 8 7 32 32 H 1.07997 * 120.00003 * 179.77097 * 10 9 8 33 33 H 0.96996 * 120.00191 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46718 * 90.00707 * 21 20 5 35 35 H 1.09002 * 109.46946 * 210.00090 * 21 20 5 36 36 H 1.08996 * 109.47236 * 330.00588 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2003 0.0000 4 6 3.5750 1.2078 0.0058 5 6 4.2773 0.0005 -0.0004 6 6 5.7560 0.0016 -0.0004 7 6 6.4584 0.5097 1.0881 8 6 7.8393 0.5077 1.0803 9 6 8.5411 -0.0029 -0.0046 10 6 7.8802 -0.5030 -1.0884 11 6 6.4730 -0.5148 -1.1103 12 6 5.7832 -1.0340 -2.2236 13 1 4.7780 -0.7027 -2.4386 14 6 6.4010 -1.9798 -3.0516 15 7 7.4496 -2.6354 -2.6264 16 14 5.7271 -2.3048 -4.7633 17 1 6.3826 -1.3927 -5.7347 18 1 6.0017 -3.7136 -5.1441 19 1 4.2614 -2.0664 -4.7717 20 6 3.5771 -1.2074 -0.0008 21 6 4.3265 -2.5148 -0.0014 22 6 2.1965 -1.2010 -0.0004 23 17 1.3232 -2.7014 -0.0016 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6522 2.1335 0.0004 28 1 4.1110 2.1454 0.0103 29 1 5.9237 0.9053 1.9390 30 1 8.3792 0.9037 1.9277 31 1 9.6210 0.0000 0.0084 32 1 8.4368 -0.8937 -1.9273 33 1 7.8777 -3.2901 -3.1999 34 1 4.5071 -2.8305 1.0262 35 1 3.7350 -3.2724 -0.5155 36 1 5.2793 -2.3873 -0.5151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245824948.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:40 Heat of formation + Delta-G solvation = 17.206396 kcal Electronic energy + Delta-G solvation = -20034.777604 eV Core-core repulsion = 17087.292707 eV Total energy + Delta-G solvation = -2947.484897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.27700 -37.38947 -35.91480 -33.83971 -33.30810 -31.29253 -29.84161 -29.33834 -26.53593 -26.17565 -24.84473 -21.86417 -20.90096 -20.78661 -19.37102 -17.34635 -16.10573 -15.46606 -15.26507 -14.44834 -14.38154 -14.01653 -13.61809 -13.39680 -12.85888 -12.70204 -12.53136 -12.32303 -12.13459 -11.74486 -11.59364 -11.43952 -11.26704 -11.18621 -10.94663 -10.79043 -10.67950 -10.49885 -10.45274 -10.17178 -9.71118 -9.46264 -9.18776 -8.05008 -7.97338 -7.47948 -7.27885 -6.86237 -4.44569 1.72638 1.86208 2.61110 2.72383 2.94708 3.03501 3.07877 3.18651 3.86785 4.20541 4.53972 5.19499 5.21684 5.51339 5.59755 5.69420 5.78895 5.85525 5.99717 6.05369 6.17165 6.31361 6.35563 6.42437 6.48309 6.55119 6.70361 6.86319 6.91693 6.96866 7.14014 7.18204 7.29621 7.36448 7.49848 7.52884 7.82869 7.96970 8.03826 8.17415 8.53051 8.76549 8.85792 10.04062 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.007623 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.495662 B = 3672.158670 C = 4848.824048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C -0.122 4.122 4 C -0.115 4.115 5 C 0.027 3.973 6 C -0.188 4.188 7 C -0.070 4.070 8 C -0.244 4.244 9 C -0.100 4.100 10 C -0.161 4.161 11 C 0.130 3.870 12 C -0.445 4.445 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.784 5.784 16 Si 0.901 3.099 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.259 1.259 20 C -0.046 4.046 21 C -0.127 4.127 22 C -0.040 4.040 23 Cl -0.087 7.087 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.283 0.717 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.678 2.144 2.352 8.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.140 4.140 4 C -0.133 4.133 5 C 0.026 3.974 6 C -0.189 4.189 7 C -0.088 4.088 8 C -0.263 4.263 9 C -0.119 4.119 10 C -0.180 4.180 11 C 0.127 3.873 12 C -0.473 4.473 13 H 0.099 0.901 14 C -0.140 4.140 15 N -0.408 5.408 16 Si 0.725 3.275 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.183 1.183 20 C -0.047 4.047 21 C -0.183 4.183 22 C -0.067 4.067 23 Cl -0.058 7.058 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.599 1.794 2.276 8.133 hybrid contribution -0.290 -0.329 -0.751 0.870 sum -7.889 1.464 1.525 8.167 Atomic orbital electron populations 1.20749 0.91315 1.02633 1.01969 1.19556 0.95838 0.91520 1.03318 1.20706 0.94102 0.96272 1.02941 1.21392 0.93461 0.98005 1.00474 1.18616 0.93396 0.90604 0.94746 1.18429 0.89225 1.14523 0.96761 1.20514 0.93724 0.98483 0.96086 1.20258 0.93667 1.12399 1.00023 1.20474 0.97487 0.99117 0.94829 1.21059 0.94523 1.03770 0.98662 1.17463 0.91508 0.88057 0.90261 1.19505 1.01300 1.19335 1.07182 0.90150 1.25917 0.94060 0.94396 0.99660 1.69786 1.17397 1.17293 1.36365 0.86398 0.80857 0.78224 0.82036 1.19163 1.20147 1.18304 1.19961 0.90396 0.96838 0.97479 1.21101 1.03405 0.92304 1.01528 1.20584 0.91688 0.85653 1.08732 1.98289 1.76488 1.33939 1.97097 0.91597 0.91842 0.91412 0.86238 0.86093 0.89348 0.89483 0.89542 0.86305 0.90596 0.92582 0.92485 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.61 36.00 0.35 -1.07 16 2 C -0.10 -1.67 5.89 -104.47 -0.62 -2.29 16 3 C -0.12 -1.97 9.68 -39.64 -0.38 -2.35 16 4 C -0.12 -2.11 9.74 -39.16 -0.38 -2.50 16 5 C 0.03 0.56 4.38 -104.91 -0.46 0.10 16 6 C -0.19 -4.30 4.66 -104.23 -0.49 -4.78 16 7 C -0.07 -1.52 9.73 -39.29 -0.38 -1.90 16 8 C -0.24 -5.28 10.03 -39.38 -0.39 -5.67 16 9 C -0.10 -2.26 9.96 -39.97 -0.40 -2.66 16 10 C -0.16 -3.95 8.64 -39.29 -0.34 -4.29 16 11 C 0.13 3.20 4.54 -106.57 -0.48 2.72 16 12 C -0.44 -10.93 6.17 -37.90 -0.23 -11.17 16 13 H 0.08 2.02 7.07 -52.49 -0.37 1.65 16 14 C 0.08 1.86 5.14 -17.32 -0.09 1.77 16 15 N -0.78 -18.87 10.96 55.55 0.61 -18.26 16 16 Si 0.90 18.21 29.60 -169.99 -5.03 13.18 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 C -0.05 -0.94 5.32 -104.17 -0.55 -1.50 16 21 C -0.13 -2.66 8.88 36.00 0.32 -2.34 16 22 C -0.04 -0.74 6.30 -39.55 -0.25 -0.99 16 23 Cl -0.09 -1.43 25.60 -51.86 -1.33 -2.76 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 26 H 0.07 0.87 6.89 -51.93 -0.36 0.52 16 27 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 29 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 32 H 0.12 3.00 6.17 -52.49 -0.32 2.68 16 33 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.12 6.90 -51.93 -0.36 0.76 16 36 H 0.12 2.76 4.34 -51.93 -0.23 2.53 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -24.96 310.47 -10.01 -34.97 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.15 Total: 7.11 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: -4.79 Total: -38.92 kcal Atomic # 7 Polarization: -18.87 SS G_CDS: 0.61 Total: -18.26 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.33 Total: -2.76 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -24.96 -10.01 -34.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245824948.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.175 kcal (2) G-P(sol) polarization free energy of solvation -24.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds