Wall clock time and date at job start Tue Mar 31 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38397 * 119.85269 * 2 1 4 4 C 1.37922 * 120.16095 * 179.71932 * 3 2 1 5 5 C 1.39666 * 119.87380 * 0.57731 * 4 3 2 6 6 C 1.47877 * 120.14053 * 179.72119 * 5 4 3 7 7 C 1.39159 * 120.33273 * 64.70504 * 6 5 4 8 8 C 1.38088 * 119.98592 * 180.02562 * 7 6 5 9 9 C 1.38933 * 120.66963 * 359.74541 * 8 7 6 10 10 C 1.36435 * 120.68275 * 0.51406 * 9 8 7 11 11 C 1.40743 * 119.98787 * 359.48983 * 10 9 8 12 12 C 1.40880 * 120.32806 * 180.23482 * 11 10 9 13 13 H 1.08001 * 119.99957 * 204.78915 * 12 11 10 14 14 C 1.40071 * 120.00380 * 24.78957 * 12 11 10 15 15 N 1.30773 * 119.99887 * 17.61807 * 14 12 11 16 16 Si 1.86801 * 120.00056 * 197.61824 * 14 12 11 17 17 H 1.48499 * 109.47172 * 90.00219 * 16 14 12 18 18 H 1.48504 * 109.46990 * 209.99704 * 16 14 12 19 19 H 1.48496 * 109.47379 * 329.99425 * 16 14 12 20 20 C 1.39611 * 119.71764 * 359.44498 * 5 4 3 21 21 C 1.50699 * 120.08149 * 180.27304 * 20 5 4 22 22 C 1.38068 * 119.83281 * 0.25448 * 20 5 4 23 23 Cl 1.73599 * 119.93568 * 179.97438 * 22 20 5 24 24 H 1.09005 * 109.47126 * 269.97451 * 1 2 3 25 25 H 1.08994 * 109.47598 * 29.97861 * 1 2 3 26 26 H 1.09002 * 109.46826 * 149.97952 * 1 2 3 27 27 H 1.08000 * 119.92121 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.06091 * 180.27691 * 4 3 2 29 29 H 1.08005 * 120.01016 * 0.03832 * 7 6 5 30 30 H 1.08001 * 119.66662 * 179.97438 * 8 7 6 31 31 H 1.08003 * 119.65247 * 180.25270 * 9 8 7 32 32 H 1.07997 * 120.00003 * 179.77097 * 10 9 8 33 33 H 0.96996 * 120.00191 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46718 * 90.00707 * 21 20 5 35 35 H 1.09002 * 109.46946 * 210.00090 * 21 20 5 36 36 H 1.08996 * 109.47236 * 330.00588 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2003 0.0000 4 6 3.5750 1.2078 0.0058 5 6 4.2773 0.0005 -0.0004 6 6 5.7560 0.0016 -0.0004 7 6 6.4584 0.5097 1.0881 8 6 7.8393 0.5077 1.0803 9 6 8.5411 -0.0029 -0.0046 10 6 7.8802 -0.5030 -1.0884 11 6 6.4730 -0.5148 -1.1103 12 6 5.7832 -1.0340 -2.2236 13 1 4.7780 -0.7027 -2.4386 14 6 6.4010 -1.9798 -3.0516 15 7 7.4496 -2.6354 -2.6264 16 14 5.7271 -2.3048 -4.7633 17 1 6.3826 -1.3927 -5.7347 18 1 6.0017 -3.7136 -5.1441 19 1 4.2614 -2.0664 -4.7717 20 6 3.5771 -1.2074 -0.0008 21 6 4.3265 -2.5148 -0.0014 22 6 2.1965 -1.2010 -0.0004 23 17 1.3232 -2.7014 -0.0016 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6522 2.1335 0.0004 28 1 4.1110 2.1454 0.0103 29 1 5.9237 0.9053 1.9390 30 1 8.3792 0.9037 1.9277 31 1 9.6210 0.0000 0.0084 32 1 8.4368 -0.8937 -1.9273 33 1 7.8777 -3.2901 -3.1999 34 1 4.5071 -2.8305 1.0262 35 1 3.7350 -3.2724 -0.5155 36 1 5.2793 -2.3873 -0.5151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245824948.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:40 Heat of formation + Delta-G solvation = 8.932137 kcal Electronic energy + Delta-G solvation = -20035.136403 eV Core-core repulsion = 17087.292707 eV Total energy + Delta-G solvation = -2947.843696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75661 -39.02576 -37.27608 -35.60605 -34.73498 -32.76468 -31.54468 -30.93674 -27.99548 -27.73840 -26.47591 -23.34871 -22.60960 -22.35213 -20.88418 -19.13251 -17.67191 -16.96810 -16.85894 -16.05116 -15.77845 -15.52743 -15.23527 -14.88065 -14.40081 -14.24424 -13.95091 -13.72015 -13.68325 -13.23089 -13.02864 -12.95382 -12.87478 -12.77971 -12.59415 -12.22714 -12.19101 -12.08413 -11.98815 -11.59733 -11.41484 -11.13778 -10.95403 -9.52773 -9.44409 -9.27235 -8.94007 -8.60593 -6.27300 0.30263 0.43850 0.99578 1.14064 1.31656 1.36592 1.46571 1.51764 2.18755 2.73452 2.80532 3.74539 3.92510 3.98685 4.17520 4.32478 4.48039 4.50945 4.62627 4.70815 4.78498 4.83065 4.86347 4.91901 4.96295 5.06322 5.16559 5.30338 5.34255 5.42274 5.49282 5.54274 5.63630 5.73986 5.83820 5.98774 6.11488 6.18882 6.25420 6.39509 6.72054 6.96040 7.06515 8.30459 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.007623 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.495662 B = 3672.158670 C = 4848.824048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.113 4.113 4 C -0.120 4.120 5 C -0.004 4.004 6 C -0.186 4.186 7 C -0.080 4.080 8 C -0.243 4.243 9 C -0.108 4.108 10 C -0.188 4.188 11 C 0.106 3.894 12 C -0.460 4.460 13 H 0.066 0.934 14 C 0.046 3.954 15 N -0.812 5.812 16 Si 0.958 3.042 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.264 1.264 20 C -0.067 4.067 21 C -0.119 4.119 22 C -0.053 4.053 23 Cl -0.074 7.074 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.159 0.841 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.288 0.712 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 3.312 2.824 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.138 4.138 5 C -0.005 4.005 6 C -0.188 4.188 7 C -0.098 4.098 8 C -0.262 4.262 9 C -0.126 4.126 10 C -0.207 4.207 11 C 0.103 3.897 12 C -0.489 4.489 13 H 0.085 0.915 14 C -0.171 4.171 15 N -0.437 5.437 16 Si 0.780 3.220 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.188 1.188 20 C -0.068 4.068 21 C -0.175 4.175 22 C -0.080 4.080 23 Cl -0.045 7.045 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.148 0.852 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.650 2.963 2.757 10.465 hybrid contribution 0.279 -0.647 -0.776 1.048 sum -9.372 2.316 1.982 9.855 Atomic orbital electron populations 1.20836 0.88419 1.03828 1.03416 1.20053 0.97926 0.90742 1.00986 1.21114 0.93227 0.97826 1.00895 1.21561 0.94712 0.97320 1.00192 1.18659 0.92564 0.91960 0.97275 1.18730 0.90751 1.13017 0.96255 1.20840 0.94110 0.98382 0.96477 1.20609 0.93918 1.11328 1.00340 1.20729 0.98671 0.98650 0.94551 1.21052 0.94838 1.05556 0.99252 1.17735 0.91851 0.88901 0.91198 1.19424 1.00849 1.20336 1.08250 0.91547 1.26517 0.94284 0.93919 1.02345 1.69827 1.18476 1.17928 1.37484 0.85541 0.79746 0.78462 0.78243 1.18666 1.19208 1.18819 1.19928 0.91526 0.96168 0.99136 1.20926 1.02095 0.93328 1.01148 1.20745 0.91204 0.87146 1.08859 1.98287 1.75894 1.33297 1.97040 0.89853 0.89403 0.91543 0.82321 0.85186 0.87195 0.86697 0.87583 0.87960 0.90084 0.92472 0.92154 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 9.61 71.23 0.68 -1.68 16 2 C -0.10 -2.88 5.89 -19.77 -0.12 -3.00 16 3 C -0.11 -3.27 9.68 22.23 0.22 -3.05 16 4 C -0.12 -4.20 9.74 22.54 0.22 -3.98 16 5 C 0.00 -0.18 4.38 -20.05 -0.09 -0.27 16 6 C -0.19 -8.64 4.66 -19.61 -0.09 -8.73 16 7 C -0.08 -3.44 9.73 22.46 0.22 -3.22 16 8 C -0.24 -10.27 10.03 22.40 0.22 -10.05 16 9 C -0.11 -4.88 9.96 22.02 0.22 -4.66 16 10 C -0.19 -9.54 8.64 22.46 0.19 -9.35 16 11 C 0.11 5.40 4.54 -21.12 -0.10 5.30 16 12 C -0.46 -23.50 6.17 23.36 0.14 -23.36 16 13 H 0.07 3.48 7.07 -2.91 -0.02 3.46 16 14 C 0.05 2.23 5.14 85.30 0.44 2.67 16 15 N -0.81 -40.63 10.96 21.85 0.24 -40.39 16 16 Si 0.96 38.10 29.60 68.60 2.03 40.13 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 20 C -0.07 -2.74 5.32 -19.57 -0.10 -2.85 16 21 C -0.12 -5.10 8.88 71.24 0.63 -4.47 16 22 C -0.05 -1.88 6.30 22.29 0.14 -1.74 16 23 Cl -0.07 -2.33 25.60 -2.72 -0.07 -2.40 16 24 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 26 H 0.07 1.49 6.89 -2.39 -0.02 1.47 16 27 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 28 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 29 H 0.11 4.17 8.06 -2.91 -0.02 4.14 16 30 H 0.11 4.16 8.06 -2.91 -0.02 4.13 16 31 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 32 H 0.10 5.44 6.17 -2.91 -0.02 5.42 16 33 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.44 6.90 -2.39 -0.02 2.43 16 36 H 0.08 4.24 4.34 -2.39 -0.01 4.23 16 Total: -1.00 -55.18 310.47 6.13 -49.05 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 1.09 Total: 26.04 kcal Atomic # 6 Polarization: -75.26 SS G_CDS: 2.84 Total: -72.43 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.24 Total: -40.39 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.07 Total: -2.40 kcal Total: -55.18 6.13 -49.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245824948.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.979 kcal (2) G-P(sol) polarization free energy of solvation -55.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds