Wall clock time and date at job start Tue Mar 31 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35704 * 116.99896 * 2 1 4 4 N 1.32335 * 119.65381 * 359.96919 * 3 2 1 5 5 C 1.32312 * 121.58455 * 179.73124 * 4 3 2 6 6 O 1.35702 * 119.63833 * 180.31315 * 5 4 3 7 7 C 1.42902 * 116.99627 * 0.26665 * 6 5 4 8 8 C 1.38775 * 120.72386 * 0.58313 * 5 4 3 9 9 C 1.50704 * 120.37638 * 179.70437 * 8 5 4 10 10 N 1.46505 * 109.46822 * 79.72625 * 9 8 5 11 11 C 1.46500 * 119.99820 * 269.99704 * 10 9 8 12 12 C 1.36932 * 120.00050 * 90.00439 * 10 9 8 13 13 H 1.08000 * 120.00367 * 342.80290 * 12 10 9 14 14 C 1.38810 * 120.00201 * 163.08371 * 12 10 9 15 15 N 1.31625 * 119.99896 * 342.56436 * 14 12 10 16 16 Si 1.86799 * 120.00355 * 162.55999 * 14 12 10 17 17 H 1.48498 * 109.46878 * 59.99982 * 16 14 12 18 18 H 1.48498 * 109.47522 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47188 * 300.00412 * 16 14 12 20 20 C 1.38559 * 119.24707 * 359.43153 * 8 5 4 21 21 C 1.38639 * 118.53171 * 0.27336 * 20 8 5 22 22 Cl 1.73604 * 120.38860 * 179.97438 * 21 20 8 23 23 H 1.09007 * 109.46994 * 60.00567 * 1 2 3 24 24 H 1.08996 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47410 * 300.00687 * 1 2 3 26 26 H 1.08998 * 109.46677 * 179.97438 * 7 6 5 27 27 H 1.08995 * 109.46913 * 299.99901 * 7 6 5 28 28 H 1.09002 * 109.47181 * 60.00301 * 7 6 5 29 29 H 1.08996 * 109.46938 * 319.72960 * 9 8 5 30 30 H 1.08998 * 109.47023 * 199.72419 * 9 8 5 31 31 H 1.09004 * 109.47463 * 264.77128 * 11 10 9 32 32 H 1.08997 * 109.47283 * 24.76987 * 11 10 9 33 33 H 1.08998 * 109.47243 * 144.77271 * 11 10 9 34 34 H 0.97002 * 119.99720 * 179.97438 * 15 14 12 35 35 H 1.07988 * 120.73161 * 180.29563 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 7 1.3176 2.3146 -0.0006 5 6 1.8782 3.5131 0.0046 6 8 1.0942 4.6207 0.0102 7 6 -0.3199 4.4144 0.0160 8 6 3.2592 3.6499 -0.0011 9 6 3.8894 5.0189 -0.0018 10 7 3.8756 5.5634 1.3583 11 6 2.7338 6.3580 1.8176 12 6 4.9301 5.3296 2.2000 13 1 5.6293 4.5359 1.9823 14 6 5.0971 6.1091 3.3364 15 7 4.4760 7.2651 3.4386 16 14 6.2031 5.5176 4.7207 17 1 7.5838 5.3327 4.2064 18 1 6.2115 6.5244 5.8122 19 1 5.6927 4.2249 5.2441 20 6 4.0520 2.5136 -0.0005 21 6 3.4321 1.2735 0.0001 22 17 4.3788 -0.1816 0.0002 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.8276 5.3789 0.0205 27 1 -0.6091 3.8553 -0.8738 28 1 -0.6014 3.8518 0.9061 29 1 3.3262 5.6777 -0.6626 30 1 4.9185 4.9449 -0.3531 31 1 2.9490 7.4175 1.6787 32 1 1.8485 6.0886 1.2417 33 1 2.5544 6.1593 2.8742 34 1 4.5924 7.8097 4.2329 35 1 5.1291 2.5922 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249819230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:10 Heat of formation + Delta-G solvation = -11.261414 kcal Electronic energy + Delta-G solvation = -21039.381802 eV Core-core repulsion = 17679.813185 eV Total energy + Delta-G solvation = -3359.568617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77359 -38.80079 -37.14413 -36.17877 -35.48748 -32.53991 -31.12057 -29.92875 -27.80555 -26.97158 -25.80251 -25.31139 -22.84667 -22.52558 -20.54934 -18.77642 -17.88354 -16.65483 -16.31935 -16.18945 -15.48240 -15.29535 -14.92038 -14.68000 -13.80374 -13.55218 -13.32020 -13.25963 -13.00070 -12.84147 -11.98806 -11.89079 -11.72282 -11.53926 -11.34510 -11.12414 -10.85881 -10.82323 -10.67059 -10.45391 -10.12108 -10.00095 -9.80351 -9.71520 -9.32360 -8.49645 -7.73144 -6.78625 -5.69490 -3.10395 1.30405 1.44829 2.34335 3.03311 3.32871 3.41482 3.47156 3.49124 3.86062 4.37558 4.55330 5.02357 5.18427 5.25268 5.29088 5.36065 5.39922 5.43420 5.50293 5.57715 5.68965 5.77212 5.87183 6.13702 6.45596 6.64486 6.70897 6.93676 7.02341 7.46993 7.52507 7.75872 7.85191 7.86847 8.39080 9.26013 9.90256 10.37229 11.34954 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.006184 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.317065 B = 4526.841027 C = 5644.298115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.299 6.299 3 C 0.351 3.649 4 N -0.585 5.585 5 C 0.369 3.631 6 O -0.283 6.283 7 C 0.039 3.961 8 C -0.167 4.167 9 C 0.200 3.800 10 N -0.590 5.590 11 C 0.158 3.842 12 C -0.256 4.256 13 H 0.069 0.931 14 C 0.002 3.998 15 N -0.905 5.905 16 Si 0.899 3.101 17 H -0.282 1.282 18 H -0.291 1.291 19 H -0.286 1.286 20 C 0.002 3.998 21 C -0.143 4.143 22 Cl -0.059 7.059 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.018 0.982 33 H 0.038 0.962 34 H 0.252 0.748 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.362 -10.761 -9.046 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.206 6.206 3 C 0.173 3.827 4 N -0.325 5.325 5 C 0.190 3.810 6 O -0.189 6.189 7 C -0.057 4.057 8 C -0.174 4.174 9 C 0.071 3.929 10 N -0.311 5.311 11 C 0.014 3.986 12 C -0.385 4.385 13 H 0.087 0.913 14 C -0.196 4.196 15 N -0.550 5.550 16 Si 0.729 3.271 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.024 4.024 21 C -0.173 4.173 22 Cl -0.031 7.031 23 H 0.075 0.925 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.029 -10.744 -8.877 16.606 hybrid contribution 0.915 -0.504 1.048 1.479 sum -8.114 -11.248 -7.829 15.926 Atomic orbital electron populations 1.22814 0.77546 1.02693 1.02286 1.86306 1.22558 1.23863 1.87860 1.18802 0.87326 0.83990 0.92589 1.66858 1.40425 0.98292 1.26880 1.19292 0.88653 0.83271 0.89745 1.86451 1.18796 1.26721 1.86903 1.22821 0.78418 1.02656 1.01779 1.21233 0.90178 1.00484 1.05500 1.19509 0.97937 0.87137 0.88346 1.43949 1.19042 1.59392 1.08751 1.20947 0.86016 0.94340 0.97316 1.19156 1.04647 1.11842 1.02857 0.91305 1.24847 0.99501 0.95486 0.99735 1.70132 1.46383 1.10222 1.28221 0.86412 0.80418 0.77908 0.82341 1.20868 1.21669 1.21222 1.21096 1.01035 0.88060 0.92177 1.20563 0.88822 0.89434 1.18459 1.98328 1.71599 1.35719 1.97468 0.92502 0.88761 0.92410 0.88648 0.92817 0.92608 0.92659 0.92137 0.95603 0.96329 0.94293 0.93783 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 101.05 1.05 1.50 16 2 O -0.30 -4.39 9.94 -18.82 -0.19 -4.57 16 3 C 0.35 5.80 7.48 -17.11 -0.13 5.67 16 4 N -0.59 -9.78 8.06 -13.38 -0.11 -9.89 16 5 C 0.37 6.61 7.46 -17.15 -0.13 6.48 16 6 O -0.28 -4.81 7.09 -18.81 -0.13 -4.94 16 7 C 0.04 0.49 10.38 101.05 1.05 1.54 16 8 C -0.17 -3.10 5.49 -104.30 -0.57 -3.67 16 9 C 0.20 4.03 5.49 -5.19 -0.03 4.00 16 10 N -0.59 -14.70 2.91 -182.50 -0.53 -15.23 16 11 C 0.16 3.93 8.98 59.85 0.54 4.46 16 12 C -0.26 -6.96 9.69 -15.06 -0.15 -7.10 16 13 H 0.07 1.81 7.89 -52.49 -0.41 1.39 16 14 C 0.00 0.07 5.03 -17.43 -0.09 -0.02 16 15 N -0.90 -26.45 10.62 55.49 0.59 -25.87 16 16 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C 0.00 0.04 9.61 -39.31 -0.38 -0.34 16 21 C -0.14 -2.36 6.36 -39.21 -0.25 -2.61 16 22 Cl -0.06 -0.88 28.53 -51.86 -1.48 -2.36 16 23 H 0.06 0.59 8.10 -51.93 -0.42 0.16 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 28 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 29 H 0.06 1.06 7.80 -51.93 -0.40 0.66 16 30 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 31 H 0.03 0.69 7.48 -51.93 -0.39 0.30 16 32 H 0.02 0.40 5.19 -51.93 -0.27 0.13 16 33 H 0.04 1.06 7.05 -51.93 -0.37 0.69 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -30.94 312.80 -5.59 -36.53 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -4.34 Total: -5.33 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 0.92 Total: 9.92 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.05 Total: -50.98 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.32 Total: -9.52 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.48 Total: -2.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.94 -5.59 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249819230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.270 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds