Wall clock time and date at job start Tue Mar 31 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35704 * 116.99896 * 2 1 4 4 N 1.32335 * 119.65381 * 359.96919 * 3 2 1 5 5 C 1.32312 * 121.58455 * 179.73124 * 4 3 2 6 6 O 1.35702 * 119.63833 * 180.31315 * 5 4 3 7 7 C 1.42902 * 116.99627 * 0.26665 * 6 5 4 8 8 C 1.38775 * 120.72386 * 0.58313 * 5 4 3 9 9 C 1.50704 * 120.37638 * 179.70437 * 8 5 4 10 10 N 1.46505 * 109.46822 * 79.72625 * 9 8 5 11 11 C 1.46500 * 119.99820 * 269.99704 * 10 9 8 12 12 C 1.36932 * 120.00050 * 90.00439 * 10 9 8 13 13 H 1.08000 * 120.00367 * 342.80290 * 12 10 9 14 14 C 1.38810 * 120.00201 * 163.08371 * 12 10 9 15 15 N 1.31625 * 119.99896 * 342.56436 * 14 12 10 16 16 Si 1.86799 * 120.00355 * 162.55999 * 14 12 10 17 17 H 1.48498 * 109.46878 * 59.99982 * 16 14 12 18 18 H 1.48498 * 109.47522 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47188 * 300.00412 * 16 14 12 20 20 C 1.38559 * 119.24707 * 359.43153 * 8 5 4 21 21 C 1.38639 * 118.53171 * 0.27336 * 20 8 5 22 22 Cl 1.73604 * 120.38860 * 179.97438 * 21 20 8 23 23 H 1.09007 * 109.46994 * 60.00567 * 1 2 3 24 24 H 1.08996 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47410 * 300.00687 * 1 2 3 26 26 H 1.08998 * 109.46677 * 179.97438 * 7 6 5 27 27 H 1.08995 * 109.46913 * 299.99901 * 7 6 5 28 28 H 1.09002 * 109.47181 * 60.00301 * 7 6 5 29 29 H 1.08996 * 109.46938 * 319.72960 * 9 8 5 30 30 H 1.08998 * 109.47023 * 199.72419 * 9 8 5 31 31 H 1.09004 * 109.47463 * 264.77128 * 11 10 9 32 32 H 1.08997 * 109.47283 * 24.76987 * 11 10 9 33 33 H 1.08998 * 109.47243 * 144.77271 * 11 10 9 34 34 H 0.97002 * 119.99720 * 179.97438 * 15 14 12 35 35 H 1.07988 * 120.73161 * 180.29563 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 7 1.3176 2.3146 -0.0006 5 6 1.8782 3.5131 0.0046 6 8 1.0942 4.6207 0.0102 7 6 -0.3199 4.4144 0.0160 8 6 3.2592 3.6499 -0.0011 9 6 3.8894 5.0189 -0.0018 10 7 3.8756 5.5634 1.3583 11 6 2.7338 6.3580 1.8176 12 6 4.9301 5.3296 2.2000 13 1 5.6293 4.5359 1.9823 14 6 5.0971 6.1091 3.3364 15 7 4.4760 7.2651 3.4386 16 14 6.2031 5.5176 4.7207 17 1 7.5838 5.3327 4.2064 18 1 6.2115 6.5244 5.8122 19 1 5.6927 4.2249 5.2441 20 6 4.0520 2.5136 -0.0005 21 6 3.4321 1.2735 0.0001 22 17 4.3788 -0.1816 0.0002 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.8276 5.3789 0.0205 27 1 -0.6091 3.8553 -0.8738 28 1 -0.6014 3.8518 0.9061 29 1 3.3262 5.6777 -0.6626 30 1 4.9185 4.9449 -0.3531 31 1 2.9490 7.4175 1.6787 32 1 1.8485 6.0886 1.2417 33 1 2.5544 6.1593 2.8742 34 1 4.5924 7.8097 4.2329 35 1 5.1291 2.5922 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249819230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:10 Heat of formation + Delta-G solvation = -32.541034 kcal Electronic energy + Delta-G solvation = -21040.304555 eV Core-core repulsion = 17679.813185 eV Total energy + Delta-G solvation = -3360.491371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.04804 -39.99472 -38.39933 -37.51220 -37.17725 -34.15717 -32.73479 -31.42003 -28.83868 -28.32002 -27.74934 -26.72372 -24.16805 -24.03903 -22.27069 -19.98349 -19.15049 -18.57918 -17.55567 -17.44714 -16.94863 -16.62964 -16.40964 -15.99165 -15.34036 -15.14564 -14.82899 -14.55256 -14.45859 -14.37278 -13.43544 -13.07641 -13.01009 -12.87552 -12.77652 -12.62328 -12.52226 -12.39310 -12.25699 -12.06711 -11.87098 -11.83162 -11.42735 -11.07230 -10.67923 -10.53055 -9.08376 -8.76652 -7.77894 -5.20657 -0.00451 0.12030 1.09611 1.47190 1.50293 1.55786 1.88048 2.15249 2.47438 2.60860 3.15787 3.34466 3.75640 3.91859 3.97776 4.14379 4.40317 4.41107 4.42082 4.44739 4.48790 4.71845 4.74425 4.75477 4.99236 5.07534 5.14241 5.27206 5.46099 5.67085 5.77853 5.78975 6.27298 6.33556 6.55483 7.18941 7.91940 8.34985 9.24968 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.006184 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.317065 B = 4526.841027 C = 5644.298115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.304 6.304 3 C 0.353 3.647 4 N -0.582 5.582 5 C 0.364 3.636 6 O -0.301 6.301 7 C 0.034 3.966 8 C -0.189 4.189 9 C 0.203 3.797 10 N -0.607 5.607 11 C 0.178 3.822 12 C -0.256 4.256 13 H 0.076 0.924 14 C -0.054 4.054 15 N -0.938 5.938 16 Si 0.959 3.041 17 H -0.271 1.271 18 H -0.296 1.296 19 H -0.286 1.286 20 C 0.007 3.993 21 C -0.153 4.153 22 Cl -0.045 7.045 23 H 0.062 0.938 24 H 0.127 0.873 25 H 0.054 0.946 26 H 0.119 0.881 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.068 0.932 31 H -0.001 1.001 32 H 0.047 0.953 33 H 0.006 0.994 34 H 0.246 0.754 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 -12.586 -9.728 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.211 6.211 3 C 0.173 3.827 4 N -0.322 5.322 5 C 0.186 3.814 6 O -0.207 6.207 7 C -0.060 4.060 8 C -0.195 4.195 9 C 0.076 3.924 10 N -0.328 5.328 11 C 0.033 3.967 12 C -0.386 4.386 13 H 0.094 0.906 14 C -0.249 4.249 15 N -0.585 5.585 16 Si 0.787 3.213 17 H -0.197 1.197 18 H -0.223 1.223 19 H -0.213 1.213 20 C -0.019 4.019 21 C -0.183 4.183 22 Cl -0.016 7.016 23 H 0.080 0.920 24 H 0.145 0.855 25 H 0.072 0.928 26 H 0.138 0.862 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.055 0.945 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.453 -12.613 -9.601 18.456 hybrid contribution 0.930 -0.077 1.141 1.474 sum -8.523 -12.690 -8.460 17.471 Atomic orbital electron populations 1.23124 0.75421 1.04973 1.02363 1.86317 1.24667 1.22786 1.87317 1.19043 0.87647 0.84532 0.91438 1.66909 1.40198 0.98000 1.27064 1.19373 0.88703 0.83856 0.89498 1.86389 1.20794 1.26840 1.86711 1.23091 0.76315 1.04382 1.02240 1.20945 0.90770 0.99671 1.08099 1.19555 0.98741 0.88024 0.86089 1.44153 1.18450 1.59884 1.10363 1.20632 0.87316 0.92931 0.95815 1.19524 1.04835 1.11169 1.03026 0.90580 1.25571 1.01533 0.95813 1.01987 1.70287 1.48426 1.11374 1.28418 0.85460 0.79334 0.76909 0.79549 1.19681 1.22282 1.21275 1.21236 1.01588 0.87965 0.91133 1.20629 0.89254 0.89885 1.18546 1.98330 1.71190 1.34687 1.97408 0.91953 0.85467 0.92755 0.86239 0.91497 0.92923 0.91941 0.91391 0.98283 0.93522 0.97496 0.94505 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.38 113.37 1.18 1.85 16 2 O -0.30 -8.20 9.94 -90.24 -0.90 -9.10 16 3 C 0.35 10.97 7.48 84.76 0.63 11.61 16 4 N -0.58 -18.46 8.06 -421.86 -3.40 -21.86 16 5 C 0.36 12.59 7.46 84.75 0.63 13.22 16 6 O -0.30 -9.85 7.09 -90.22 -0.64 -10.48 16 7 C 0.03 0.80 10.38 113.37 1.18 1.98 16 8 C -0.19 -6.79 5.49 -19.66 -0.11 -6.89 16 9 C 0.20 8.05 5.49 85.63 0.47 8.52 16 10 N -0.61 -30.18 2.91 -731.30 -2.13 -32.31 16 11 C 0.18 8.96 8.98 127.77 1.15 10.11 16 12 C -0.26 -13.86 9.69 84.03 0.81 -13.04 16 13 H 0.08 3.93 7.89 -2.91 -0.02 3.90 16 14 C -0.05 -3.07 5.03 84.86 0.43 -2.64 16 15 N -0.94 -56.06 10.62 21.65 0.23 -55.83 16 16 Si 0.96 45.57 29.59 68.60 2.03 47.60 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 C 0.01 0.21 9.61 22.44 0.22 0.43 16 21 C -0.15 -4.79 6.36 22.51 0.14 -4.65 16 22 Cl -0.04 -1.23 28.53 -2.72 -0.08 -1.31 16 23 H 0.06 1.12 8.10 -2.38 -0.02 1.10 16 24 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 26 H 0.12 2.17 8.14 -2.39 -0.02 2.16 16 27 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 28 H 0.05 1.26 8.11 -2.39 -0.02 1.24 16 29 H 0.06 2.36 7.80 -2.39 -0.02 2.34 16 30 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 31 H 0.00 -0.06 7.48 -2.38 -0.02 -0.08 16 32 H 0.05 2.04 5.19 -2.39 -0.01 2.03 16 33 H 0.01 0.35 7.05 -2.39 -0.02 0.34 16 34 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.17 4.83 8.06 -2.92 -0.02 4.81 16 Total: -1.00 -65.71 312.80 2.95 -62.77 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: 1.10 Total: 0.04 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.73 Total: 20.48 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -5.30 Total: -110.00 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.54 Total: -19.58 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -65.71 2.95 -62.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249819230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.226 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds