Wall clock time and date at job start Tue Mar 31 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42095 * 110.54524 * 2 1 4 4 O 1.42097 * 110.54464 * 223.24522 * 2 1 3 5 5 C 1.76204 * 104.44554 * 111.62437 * 2 1 3 6 6 C 1.38262 * 119.98904 * 90.00045 * 5 2 1 7 7 C 1.38227 * 120.05195 * 179.97438 * 6 5 2 8 8 C 1.38219 * 120.02402 * 0.25898 * 7 6 5 9 9 C 1.50699 * 120.00977 * 179.74165 * 8 7 6 10 10 C 1.53002 * 109.47052 * 99.99943 * 9 8 7 11 11 C 1.52998 * 109.47337 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47367 * 180.02562 * 11 10 9 13 13 H 1.07993 * 119.99851 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00067 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00066 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99877 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46827 * 90.00438 * 16 14 12 18 18 H 1.48500 * 109.47185 * 210.00033 * 16 14 12 19 19 H 1.48496 * 109.47445 * 330.00568 * 16 14 12 20 20 C 1.38438 * 119.97312 * 359.48405 * 8 7 6 21 21 F 1.35104 * 120.02404 * 180.25480 * 20 8 7 22 22 C 1.38177 * 119.98608 * 269.97417 * 5 2 1 23 23 H 1.08998 * 109.47190 * 308.38062 * 1 2 3 24 24 H 1.09005 * 109.46422 * 68.37751 * 1 2 3 25 25 H 1.08991 * 109.47182 * 188.37524 * 1 2 3 26 26 H 1.07999 * 119.97792 * 359.95470 * 6 5 2 27 27 H 1.08002 * 119.98464 * 179.97438 * 7 6 5 28 28 H 1.09003 * 109.47274 * 219.99335 * 9 8 7 29 29 H 1.08989 * 109.47561 * 339.99785 * 9 8 7 30 30 H 1.09002 * 109.47317 * 299.99689 * 10 9 8 31 31 H 1.09004 * 109.47505 * 59.99833 * 10 9 8 32 32 H 1.08996 * 109.47000 * 299.99798 * 11 10 9 33 33 H 1.09004 * 109.46735 * 59.99636 * 11 10 9 34 34 H 0.96994 * 120.00199 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.01256 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2536 -0.6288 1.5862 6 6 2.4260 -1.9887 1.7671 7 6 2.7713 -2.4833 3.0107 8 6 2.9395 -1.6193 4.0764 9 6 3.3103 -2.1595 5.4335 10 6 4.8123 -1.9781 5.6616 11 6 5.1887 -2.5259 7.0397 12 6 6.6680 -2.3467 7.2646 13 1 7.2786 -1.8883 6.5009 14 6 7.2420 -2.7689 8.4450 15 7 8.5330 -2.6129 8.6411 16 14 6.1858 -3.5624 9.7657 17 1 6.1439 -5.0311 9.5499 18 1 6.7655 -3.2748 11.1023 19 1 4.8083 -3.0123 9.6948 20 6 2.7723 -0.2570 3.8953 21 9 2.9414 0.5889 4.9350 22 6 2.4264 0.2374 2.6489 23 1 -0.3633 0.6380 0.8056 24 1 -0.3632 0.3787 -0.9554 25 1 -0.3633 -1.0166 0.1497 26 1 2.2904 -2.6650 0.9361 27 1 2.9053 -3.5458 3.1509 28 1 2.7582 -1.6195 6.2028 29 1 3.0606 -3.2192 5.4834 30 1 5.3644 -2.5180 4.8924 31 1 5.0620 -0.9182 5.6118 32 1 4.6366 -1.9856 7.8086 33 1 4.9388 -3.5857 7.0899 34 1 8.9367 -2.9096 9.4717 35 1 2.2917 1.2995 2.5074 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065086.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:14 Heat of formation + Delta-G solvation = -130.302456 kcal Electronic energy + Delta-G solvation = -19782.593747 eV Core-core repulsion = 16399.986867 eV Total energy + Delta-G solvation = -3382.606879 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.99773 -40.29597 -38.14069 -36.99878 -36.67066 -34.69071 -32.56985 -31.68929 -30.27553 -29.06203 -25.63311 -24.07661 -22.95044 -21.85920 -20.22680 -19.09253 -18.87508 -17.94305 -17.17280 -17.10299 -16.77978 -16.52390 -16.44907 -16.10933 -15.67742 -14.92606 -14.89515 -14.39583 -14.20874 -14.00533 -13.89276 -13.53702 -13.48634 -13.39713 -13.13593 -13.08648 -12.82051 -12.70749 -12.42208 -12.13265 -11.81748 -11.77282 -11.51862 -11.44221 -11.39064 -10.78727 -10.22862 -9.88199 -8.31641 -6.37063 -0.87579 -0.38018 0.03738 1.34721 1.37941 1.49987 1.87079 2.20161 2.35107 3.02353 3.03560 3.04185 3.33403 3.56178 3.61326 3.91718 4.09494 4.16124 4.23192 4.28821 4.32551 4.46886 4.57907 4.73193 4.83715 4.94456 4.98098 5.00084 5.01511 5.05291 5.22995 5.44599 5.55134 5.62957 5.72223 6.25308 6.71107 7.27681 8.85726 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.037208 B = 0.003192 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.340492 B = 8771.109920 C = 8800.221425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.619 4.619 2 S 2.512 3.488 3 O -0.979 6.979 4 O -0.969 6.969 5 C -0.644 4.644 6 C -0.032 4.032 7 C -0.111 4.111 8 C -0.067 4.067 9 C -0.085 4.085 10 C -0.090 4.090 11 C -0.009 4.009 12 C -0.539 4.539 13 H 0.024 0.976 14 C 0.000 4.000 15 N -0.954 5.954 16 Si 0.958 3.042 17 H -0.261 1.261 18 H -0.285 1.285 19 H -0.244 1.244 20 C 0.054 3.946 21 F -0.146 7.146 22 C -0.065 4.065 23 H 0.152 0.848 24 H 0.157 0.843 25 H 0.159 0.841 26 H 0.175 0.825 27 H 0.166 0.834 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.020 0.980 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.660 1.604 -17.423 30.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.774 4.774 2 S 2.694 3.306 3 O -0.976 6.976 4 O -0.966 6.966 5 C -0.728 4.728 6 C -0.050 4.050 7 C -0.130 4.130 8 C -0.068 4.068 9 C -0.122 4.122 10 C -0.128 4.128 11 C -0.047 4.047 12 C -0.577 4.577 13 H 0.042 0.958 14 C -0.197 4.197 15 N -0.595 5.595 16 Si 0.780 3.220 17 H -0.186 1.186 18 H -0.211 1.211 19 H -0.167 1.167 20 C 0.034 3.966 21 F -0.125 7.125 22 C -0.085 4.085 23 H 0.170 0.830 24 H 0.175 0.825 25 H 0.177 0.823 26 H 0.193 0.807 27 H 0.184 0.816 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.903 1.863 -17.882 29.910 hybrid contribution 0.376 -0.041 1.833 1.871 sum -23.527 1.822 -16.050 28.538 Atomic orbital electron populations 1.30010 1.18528 1.14671 1.14168 1.04885 0.80292 0.72927 0.72514 1.93546 1.79978 1.38076 1.85998 1.93549 1.79852 1.62183 1.61031 1.30744 1.17738 1.02760 1.21599 1.21369 0.91968 0.93484 0.98193 1.21477 0.98834 1.01421 0.91256 1.20567 0.95849 0.92043 0.98317 1.20757 0.96007 1.03134 0.92257 1.21289 0.94050 0.99647 0.97797 1.19527 0.93921 0.96741 0.94483 1.21526 0.94251 1.39709 1.02192 0.95774 1.26134 0.96284 0.96106 1.01149 1.70085 1.12883 1.49384 1.27144 0.85547 0.79845 0.79401 0.77173 1.18592 1.21087 1.16714 1.17949 1.05444 0.87901 0.85329 1.91495 1.93327 1.70517 1.57138 1.21005 0.96007 1.01536 0.89927 0.82982 0.82535 0.82279 0.80722 0.81606 0.90485 0.87834 0.92994 0.94696 0.96166 0.95220 0.92433 0.82059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -1.20 10.80 113.37 1.22 0.02 16 2 S 2.51 34.52 5.80 -56.49 -0.33 34.19 16 3 O -0.98 -21.62 17.12 -127.65 -2.19 -23.81 16 4 O -0.97 -19.38 17.13 -127.65 -2.19 -21.57 16 5 C -0.64 -11.64 5.66 22.26 0.13 -11.51 16 6 C -0.03 -0.54 9.47 22.27 0.21 -0.33 16 7 C -0.11 -2.24 9.67 22.26 0.22 -2.02 16 8 C -0.07 -1.76 5.14 -19.82 -0.10 -1.86 16 9 C -0.08 -2.48 5.07 29.85 0.15 -2.33 16 10 C -0.09 -3.60 5.13 30.59 0.16 -3.44 16 11 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 12 C -0.54 -32.15 9.66 25.60 0.25 -31.90 16 13 H 0.02 1.60 7.99 -2.91 -0.02 1.58 16 14 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 15 N -0.95 -61.40 13.96 21.45 0.30 -61.11 16 16 Si 0.96 44.44 27.47 68.60 1.88 46.32 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 20 C 0.05 1.49 7.24 22.37 0.16 1.65 16 21 F -0.15 -4.69 16.67 44.97 0.75 -3.94 16 22 C -0.07 -1.47 9.45 22.31 0.21 -1.26 16 23 H 0.15 -0.10 8.14 -2.39 -0.02 -0.12 16 24 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H 0.16 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.18 1.94 7.57 -2.91 -0.02 1.92 16 27 H 0.17 2.48 8.04 -2.91 -0.02 2.45 16 28 H 0.08 2.26 7.95 -2.39 -0.02 2.24 16 29 H 0.10 2.51 8.00 -2.39 -0.02 2.49 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 33 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 34 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 35 H 0.16 3.12 7.57 -2.91 -0.02 3.10 16 Total: -1.00 -84.06 316.60 2.45 -81.60 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.03 Total: 1.16 kcal Atomic # 6 Polarization: -56.04 SS G_CDS: 3.19 Total: -52.85 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.30 Total: -61.11 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -4.37 Total: -45.38 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.75 Total: -3.94 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: 34.52 SS G_CDS: -0.33 Total: 34.19 kcal Total: -84.06 2.45 -81.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065086.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.698 kcal (2) G-P(sol) polarization free energy of solvation -84.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds