Wall clock time and date at job start Tue Mar 31 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00142 * 2 1 4 4 H 1.48508 * 109.46690 * 269.99682 * 3 2 1 5 5 H 1.48501 * 109.47572 * 29.99477 * 3 2 1 6 6 H 1.48499 * 109.47449 * 149.99872 * 3 2 1 7 7 C 1.37879 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00244 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46814 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47050 * 180.02562 * 11 10 9 13 13 C 1.38437 * 119.90959 * 270.27635 * 12 11 10 14 14 C 1.38380 * 120.34481 * 180.23898 * 13 12 11 15 15 C 1.37914 * 120.17182 * 359.47977 * 14 13 12 16 16 C 1.39828 * 119.82356 * 0.26395 * 15 14 13 17 17 C 1.47168 * 120.17116 * 179.97438 * 16 15 14 18 18 O 1.21251 * 120.00499 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99720 * 359.97438 * 17 16 15 20 20 F 1.39905 * 109.47011 * 180.02562 * 19 17 16 21 21 F 1.39895 * 109.47272 * 300.00322 * 19 17 16 22 22 F 1.39900 * 109.47331 * 60.00540 * 19 17 16 23 23 C 1.37865 * 119.91716 * 89.99801 * 12 11 10 24 24 H 0.97002 * 119.99964 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47114 * 59.99772 * 9 7 2 26 26 H 1.09000 * 109.47128 * 299.99879 * 9 7 2 27 27 H 1.08992 * 109.47098 * 60.00364 * 10 9 7 28 28 H 1.09000 * 109.47226 * 299.99904 * 10 9 7 29 29 H 1.09004 * 109.47215 * 59.99818 * 11 10 9 30 30 H 1.09000 * 109.47063 * 299.99903 * 11 10 9 31 31 H 1.07991 * 119.82663 * 359.97438 * 13 12 11 32 32 H 1.08002 * 119.91533 * 179.76681 * 14 13 12 33 33 H 1.07999 * 120.08530 * 180.23581 * 15 14 13 34 34 H 1.08000 * 120.08355 * 0.04307 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4594 -6.1326 0.0005 13 6 2.9132 -6.6534 -1.1992 14 6 3.8086 -7.7085 -1.2091 15 6 4.2641 -8.2422 -0.0218 16 6 3.8145 -7.7182 1.1941 17 6 4.2951 -8.2823 2.4655 18 8 3.9036 -7.8252 3.5181 19 6 5.2740 -9.4281 2.4592 20 9 5.5792 -9.7879 3.7763 21 9 4.7070 -10.5222 1.7969 22 9 6.4440 -9.0383 1.7988 23 6 2.9053 -6.6553 1.1958 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.8537 -5.0446 -0.8903 30 1 0.8532 -5.0451 0.8897 31 1 2.5633 -6.2370 -2.1321 32 1 4.1552 -8.1119 -2.1491 33 1 4.9659 -9.0631 -0.0312 34 1 2.5532 -6.2453 2.1308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:54 Heat of formation + Delta-G solvation = -178.627887 kcal Electronic energy + Delta-G solvation = -21521.998786 eV Core-core repulsion = 17583.455972 eV Total energy + Delta-G solvation = -3938.542814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.65544 -48.14399 -48.13347 -40.46235 -38.85797 -34.97312 -32.86541 -31.67495 -30.65260 -28.49055 -26.82954 -24.18813 -23.69043 -21.89083 -21.01205 -20.16308 -19.06862 -19.06084 -18.15983 -16.87908 -16.26209 -16.02166 -15.48078 -15.30958 -14.86783 -14.65328 -14.54237 -14.52616 -14.38577 -14.26359 -14.23393 -13.82348 -13.62482 -13.33968 -13.09463 -12.30658 -12.00932 -11.86204 -11.44418 -11.21671 -10.83301 -10.76211 -10.60478 -10.47252 -9.75448 -9.48346 -9.24685 -9.17837 -8.71127 -8.36999 -6.02140 -4.04578 0.03095 1.19136 1.63046 1.84556 2.96092 3.30645 3.37137 3.40644 3.47777 3.48608 3.83063 4.12846 4.44350 4.61124 4.66322 4.93513 5.12755 5.17896 5.33803 5.46567 5.68620 5.77547 5.92240 5.95850 6.15304 6.25043 6.34524 6.42443 6.67925 6.72683 6.79875 7.06512 7.64426 7.77853 7.97567 8.40125 9.02517 9.59776 11.09121 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.026687 B = 0.003052 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.946216 B = 9172.945690 C = 9564.858057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.104 4.104 11 C -0.087 4.087 12 C -0.076 4.076 13 C -0.069 4.069 14 C -0.127 4.127 15 C -0.077 4.077 16 C -0.178 4.178 17 C 0.371 3.629 18 O -0.381 6.381 19 C 0.426 3.574 20 F -0.164 7.164 21 F -0.165 7.165 22 F -0.164 7.164 23 C -0.043 4.043 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 -21.219 -0.035 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.142 4.142 11 C -0.124 4.124 12 C -0.076 4.076 13 C -0.087 4.087 14 C -0.145 4.145 15 C -0.095 4.095 16 C -0.179 4.179 17 C 0.242 3.758 18 O -0.250 6.250 19 C 0.370 3.630 20 F -0.145 7.145 21 F -0.147 7.147 22 F -0.146 7.146 23 C -0.061 4.061 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.468 -20.876 0.569 22.536 hybrid contribution 0.761 0.638 -0.023 0.994 sum 9.229 -20.238 0.546 22.250 Atomic orbital electron populations 1.69961 1.06051 1.26624 1.50869 1.25023 0.94850 0.99267 0.95313 0.86604 0.79888 0.83480 0.78104 1.20660 1.21202 1.19867 1.21255 0.93045 0.91097 1.50579 0.92721 1.19121 0.93968 0.91268 0.97307 1.21660 0.99077 0.92814 1.00654 1.20871 0.95995 0.92406 1.03168 1.20261 0.98130 0.96989 0.92173 1.21551 0.94548 0.94145 0.98497 1.21102 0.98266 0.97203 0.97917 1.21402 0.97882 0.98591 0.91673 1.19714 1.04389 1.01815 0.91948 1.22923 0.79976 0.81923 0.90968 1.90683 1.47599 1.53253 1.33423 1.20958 0.82331 0.85006 0.74677 1.93258 1.93500 1.92485 1.35237 1.93248 1.84542 1.56275 1.80613 1.93258 1.49930 1.90715 1.80661 1.21308 0.93055 0.92374 0.99355 0.92989 0.96533 0.96503 0.93199 0.93169 0.90790 0.90907 0.84807 0.84918 0.85379 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.03 5.14 -26.73 -0.14 -2.17 16 11 C -0.09 -1.34 5.34 -27.88 -0.15 -1.49 16 12 C -0.08 -0.99 5.13 -104.69 -0.54 -1.53 16 13 C -0.07 -0.77 9.69 -39.46 -0.38 -1.15 16 14 C -0.13 -1.20 10.03 -39.65 -0.40 -1.60 16 15 C -0.08 -0.76 8.94 -39.11 -0.35 -1.11 16 16 C -0.18 -2.08 5.86 -105.07 -0.62 -2.69 16 17 C 0.37 4.36 6.67 -30.68 -0.20 4.16 16 18 O -0.38 -5.33 16.61 5.58 0.09 -5.24 16 19 C 0.43 4.37 2.80 36.01 0.10 4.47 16 20 F -0.16 -1.83 16.92 2.25 0.04 -1.79 16 21 F -0.17 -1.56 16.15 2.25 0.04 -1.52 16 22 F -0.16 -1.61 16.15 2.25 0.04 -1.58 16 23 C -0.04 -0.56 9.24 -39.11 -0.36 -0.92 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 30 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.02 5.90 -52.49 -0.31 0.71 16 34 H 0.14 1.82 7.65 -52.49 -0.40 1.42 16 LS Contribution 312.81 15.07 4.71 4.71 Total: -1.00 -30.14 312.81 -6.58 -36.72 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: -3.63 Total: -4.80 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -3.58 Total: -17.07 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: 0.09 Total: -5.24 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.11 Total: -4.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.14 -6.58 -36.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.905 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds