Wall clock time and date at job start Tue Mar 31 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00142 * 2 1 4 4 H 1.48508 * 109.46690 * 269.99682 * 3 2 1 5 5 H 1.48501 * 109.47572 * 29.99477 * 3 2 1 6 6 H 1.48499 * 109.47449 * 149.99872 * 3 2 1 7 7 C 1.37879 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00244 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46814 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47050 * 180.02562 * 11 10 9 13 13 C 1.38437 * 119.90959 * 270.27635 * 12 11 10 14 14 C 1.38380 * 120.34481 * 180.23898 * 13 12 11 15 15 C 1.37914 * 120.17182 * 359.47977 * 14 13 12 16 16 C 1.39828 * 119.82356 * 0.26395 * 15 14 13 17 17 C 1.47168 * 120.17116 * 179.97438 * 16 15 14 18 18 O 1.21251 * 120.00499 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99720 * 359.97438 * 17 16 15 20 20 F 1.39905 * 109.47011 * 180.02562 * 19 17 16 21 21 F 1.39895 * 109.47272 * 300.00322 * 19 17 16 22 22 F 1.39900 * 109.47331 * 60.00540 * 19 17 16 23 23 C 1.37865 * 119.91716 * 89.99801 * 12 11 10 24 24 H 0.97002 * 119.99964 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47114 * 59.99772 * 9 7 2 26 26 H 1.09000 * 109.47128 * 299.99879 * 9 7 2 27 27 H 1.08992 * 109.47098 * 60.00364 * 10 9 7 28 28 H 1.09000 * 109.47226 * 299.99904 * 10 9 7 29 29 H 1.09004 * 109.47215 * 59.99818 * 11 10 9 30 30 H 1.09000 * 109.47063 * 299.99903 * 11 10 9 31 31 H 1.07991 * 119.82663 * 359.97438 * 13 12 11 32 32 H 1.08002 * 119.91533 * 179.76681 * 14 13 12 33 33 H 1.07999 * 120.08530 * 180.23581 * 15 14 13 34 34 H 1.08000 * 120.08355 * 0.04307 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4594 -6.1326 0.0005 13 6 2.9132 -6.6534 -1.1992 14 6 3.8086 -7.7085 -1.2091 15 6 4.2641 -8.2422 -0.0218 16 6 3.8145 -7.7182 1.1941 17 6 4.2951 -8.2823 2.4655 18 8 3.9036 -7.8252 3.5181 19 6 5.2740 -9.4281 2.4592 20 9 5.5792 -9.7879 3.7763 21 9 4.7070 -10.5222 1.7969 22 9 6.4440 -9.0383 1.7988 23 6 2.9053 -6.6553 1.1958 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 0.8537 -5.0446 -0.8903 30 1 0.8532 -5.0451 0.8897 31 1 2.5633 -6.2370 -2.1321 32 1 4.1552 -8.1119 -2.1491 33 1 4.9659 -9.0631 -0.0312 34 1 2.5532 -6.2453 2.1308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:54 Heat of formation + Delta-G solvation = -193.614015 kcal Electronic energy + Delta-G solvation = -21522.648633 eV Core-core repulsion = 17583.455972 eV Total energy + Delta-G solvation = -3939.192661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.48055 -48.97946 -48.93796 -41.40572 -39.81837 -36.51698 -34.65419 -32.68526 -32.04099 -29.52596 -28.35353 -25.51557 -24.92918 -22.96259 -22.19459 -21.59540 -19.91642 -19.87840 -19.12360 -18.43294 -17.67182 -16.98579 -16.54019 -16.48353 -16.21959 -15.69846 -15.52948 -15.44845 -15.34062 -15.13844 -15.05091 -15.00631 -14.71069 -14.56588 -14.41655 -13.91061 -13.43945 -13.14088 -12.83678 -12.65096 -12.49207 -12.42767 -12.15746 -11.57665 -11.41675 -11.30929 -11.14258 -10.54854 -10.11605 -9.78398 -8.20019 -6.30849 -0.87819 0.30519 0.73867 0.96438 1.39879 1.41016 1.52101 2.11302 2.40826 2.60343 2.63132 3.00229 3.13156 3.26085 3.68874 3.82344 4.03500 4.20968 4.25141 4.42262 4.53175 4.63692 4.77390 4.96853 4.99610 5.06460 5.21467 5.25828 5.33855 5.51313 5.53675 5.55776 5.78056 5.80991 5.88058 6.26153 6.86514 7.38430 8.91520 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.026687 B = 0.003052 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.946216 B = 9172.945690 C = 9564.858057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.091 4.091 11 C -0.077 4.077 12 C -0.092 4.092 13 C -0.068 4.068 14 C -0.117 4.117 15 C -0.066 4.066 16 C -0.188 4.188 17 C 0.375 3.625 18 O -0.412 6.412 19 C 0.437 3.563 20 F -0.169 7.169 21 F -0.156 7.156 22 F -0.158 7.158 23 C -0.057 4.057 24 H 0.263 0.737 25 H -0.003 1.003 26 H -0.010 1.010 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.152 0.848 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.615 -22.287 -1.435 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.015 4.015 10 C -0.128 4.128 11 C -0.114 4.114 12 C -0.092 4.092 13 C -0.086 4.086 14 C -0.135 4.135 15 C -0.084 4.084 16 C -0.189 4.189 17 C 0.248 3.752 18 O -0.283 6.283 19 C 0.382 3.618 20 F -0.150 7.150 21 F -0.138 7.138 22 F -0.139 7.139 23 C -0.076 4.076 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.009 0.991 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.188 0.812 33 H 0.170 0.830 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.287 -21.965 -0.840 24.269 hybrid contribution 0.195 0.913 0.377 1.007 sum 10.482 -21.051 -0.463 23.521 Atomic orbital electron populations 1.70089 1.07720 1.27741 1.51754 1.25960 0.95767 1.03279 0.94795 0.85487 0.78629 0.78608 0.78581 1.19551 1.20793 1.18981 1.21726 0.93496 0.92601 1.50424 0.92427 1.19045 0.94476 0.92950 0.95032 1.21419 0.97882 0.92994 1.00527 1.20641 0.96178 0.91358 1.03260 1.20015 0.98795 0.97149 0.93290 1.21801 0.94324 0.94312 0.98113 1.21498 0.96820 0.95943 0.99221 1.21738 0.97254 0.98462 0.90987 1.19778 1.04574 1.01806 0.92763 1.23128 0.79619 0.81865 0.90601 1.90676 1.48856 1.54380 1.34365 1.20586 0.82065 0.84599 0.74593 1.93252 1.93501 1.92467 1.35791 1.93270 1.84442 1.55712 1.80354 1.93275 1.49500 1.90691 1.80463 1.21260 0.94029 0.93360 0.98931 0.92774 0.98419 0.99124 0.93877 0.92561 0.90033 0.91623 0.83232 0.81206 0.83020 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.09 -3.58 5.14 30.60 0.16 -3.42 16 11 C -0.08 -2.39 5.34 29.85 0.16 -2.23 16 12 C -0.09 -2.36 5.13 -19.91 -0.10 -2.46 16 13 C -0.07 -1.32 9.69 22.35 0.22 -1.11 16 14 C -0.12 -1.75 10.03 22.23 0.22 -1.53 16 15 C -0.07 -1.10 8.94 22.58 0.20 -0.90 16 16 C -0.19 -4.15 5.86 -20.15 -0.12 -4.27 16 17 C 0.38 8.52 6.67 28.03 0.19 8.71 16 18 O -0.41 -11.70 16.61 -2.94 -0.05 -11.75 16 19 C 0.44 8.20 2.80 71.24 0.20 8.40 16 20 F -0.17 -3.59 16.92 44.97 0.76 -2.83 16 21 F -0.16 -2.57 16.15 44.97 0.73 -1.84 16 22 F -0.16 -2.72 16.15 44.97 0.73 -2.00 16 23 C -0.06 -1.49 9.24 22.58 0.21 -1.28 16 24 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 25 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 2.37 8.09 -2.38 -0.02 2.35 16 30 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 31 H 0.15 2.44 8.06 -2.92 -0.02 2.41 16 32 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.15 1.79 5.90 -2.91 -0.02 1.77 16 34 H 0.13 3.48 7.65 -2.91 -0.02 3.46 16 Total: -1.00 -65.82 312.81 7.78 -58.04 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: 1.13 Total: -0.42 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 2.18 Total: -29.11 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.05 Total: -11.75 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 2.21 Total: -6.67 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.82 7.78 -58.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.573 kcal (2) G-P(sol) polarization free energy of solvation -65.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds