Wall clock time and date at job start Tue Mar 31 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42100 * 110.54086 * 2 1 4 4 O 1.42098 * 110.54465 * 223.24927 * 2 1 3 5 5 C 1.76200 * 104.44880 * 111.62153 * 2 1 3 6 6 C 1.38226 * 120.00681 * 114.99989 * 5 2 1 7 7 C 1.38225 * 120.02224 * 180.02562 * 6 5 2 8 8 C 1.50703 * 119.97318 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46946 * 90.00140 * 8 7 6 10 10 C 1.52997 * 109.46947 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 C 1.38266 * 120.05219 * 0.25319 * 7 6 5 20 20 C 1.38181 * 120.02284 * 359.45157 * 19 7 6 21 21 C 1.38435 * 120.01630 * 295.02501 * 5 2 1 22 22 F 1.35095 * 120.02626 * 0.02562 * 21 5 2 23 23 H 1.09000 * 109.46930 * 308.37505 * 1 2 3 24 24 H 1.08999 * 109.46829 * 68.37470 * 1 2 3 25 25 H 1.08991 * 109.46786 * 188.37678 * 1 2 3 26 26 H 1.07991 * 119.98813 * 0.02562 * 6 5 2 27 27 H 1.08992 * 109.46894 * 329.99859 * 8 7 6 28 28 H 1.08996 * 109.46805 * 210.00009 * 8 7 6 29 29 H 1.09001 * 109.47372 * 60.00128 * 9 8 7 30 30 H 1.09004 * 109.47108 * 299.99872 * 9 8 7 31 31 H 1.09001 * 109.46832 * 59.99979 * 10 9 8 32 32 H 1.09000 * 109.47611 * 300.00276 * 10 9 8 33 33 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 34 34 H 1.07996 * 119.98928 * 179.72516 * 19 7 6 35 35 H 1.08007 * 120.00959 * 180.27624 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3128 -0.9692 -0.9117 5 6 2.2537 -0.6287 1.5862 6 6 2.9161 -1.8374 1.6914 7 6 3.2606 -2.3311 2.9357 8 6 3.9823 -3.6493 3.0491 9 6 5.4927 -3.4089 3.0093 10 6 6.2253 -4.7470 3.1252 11 6 7.7131 -4.5103 3.0853 12 1 8.0976 -3.5059 2.9876 13 6 8.5833 -5.5761 3.1736 14 7 8.1150 -6.7993 3.2921 15 14 10.4275 -5.2826 3.1249 16 1 10.6938 -3.8282 2.9868 17 1 11.0415 -5.7815 4.3816 18 1 11.0132 -6.0047 1.9671 19 6 2.9387 -1.6194 4.0765 20 6 2.2820 -0.4080 3.9734 21 6 1.9355 0.0873 2.7275 22 9 1.2872 1.2682 2.6258 23 1 -0.3633 0.6380 0.8057 24 1 -0.3633 0.3787 -0.9553 25 1 -0.3632 -1.0166 0.1497 26 1 3.1644 -2.3961 0.8013 27 1 3.6948 -4.2935 2.2183 28 1 3.7155 -4.1296 3.9905 29 1 5.7801 -2.7646 3.8402 30 1 5.7594 -2.9285 2.0679 31 1 5.9379 -5.3916 2.2945 32 1 5.9585 -5.2271 4.0667 33 1 8.7273 -7.5491 3.3546 34 1 3.2044 -2.0083 5.0483 35 1 2.0345 0.1499 4.8645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:21 Heat of formation + Delta-G solvation = -106.015554 kcal Electronic energy + Delta-G solvation = -19882.508804 eV Core-core repulsion = 16500.955083 eV Total energy + Delta-G solvation = -3381.553720 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.40998 -39.43387 -37.24542 -36.13515 -34.82948 -32.66890 -31.64885 -30.33245 -29.80677 -26.77661 -23.85523 -23.74678 -21.83283 -20.22811 -19.09480 -18.19249 -17.08946 -17.00679 -16.49079 -16.22562 -15.90510 -15.60113 -14.76369 -14.46877 -14.25929 -14.09589 -13.65855 -13.57984 -13.33618 -13.08770 -12.68263 -12.35398 -12.23213 -12.13236 -11.91665 -11.62398 -11.40387 -11.27511 -10.91266 -10.75338 -10.71398 -10.49371 -9.77342 -9.64598 -9.44280 -9.14123 -8.62724 -8.36292 -6.01361 -4.03573 -0.21135 0.52486 0.96451 2.57173 3.14948 3.31046 3.38745 3.43420 3.59764 3.75963 3.96441 4.38089 4.43804 4.45741 4.64539 4.80873 4.94735 5.10385 5.27956 5.28957 5.34940 5.57933 5.70918 5.77419 5.86607 5.94494 6.21872 6.27446 6.61014 6.69502 6.79545 7.06631 7.65358 7.78206 7.98423 8.41125 9.03687 9.60950 11.09930 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.003444 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.716766 B = 8128.089701 C = 8529.629868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.502 3.498 3 O -0.929 6.929 4 O -0.931 6.931 5 C -0.693 4.693 6 C 0.003 3.997 7 C -0.090 4.090 8 C -0.087 4.087 9 C -0.107 4.107 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.039 4.039 20 C -0.167 4.167 21 C 0.168 3.832 22 F -0.130 7.130 23 H 0.132 0.868 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.156 0.844 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.142 0.858 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.321 12.698 -1.921 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.680 3.320 3 O -0.927 6.927 4 O -0.928 6.928 5 C -0.779 4.779 6 C -0.016 4.016 7 C -0.091 4.091 8 C -0.124 4.124 9 C -0.144 4.144 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.057 4.057 20 C -0.186 4.186 21 C 0.147 3.853 22 F -0.109 7.109 23 H 0.150 0.850 24 H 0.152 0.848 25 H 0.152 0.848 26 H 0.174 0.826 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.725 12.821 -2.538 22.835 hybrid contribution 0.472 0.039 0.828 0.954 sum -18.253 12.860 -1.710 22.394 Atomic orbital electron populations 1.30224 1.25628 1.12190 1.11994 1.05208 0.77957 0.74782 0.74088 1.93617 1.77085 1.36211 1.85751 1.93599 1.77350 1.61572 1.60273 1.30496 1.19054 1.08421 1.19905 1.20900 0.90186 0.91207 0.99307 1.20474 0.97556 0.98615 0.92443 1.20877 0.96930 0.91380 1.03225 1.21688 0.90543 1.01370 1.00828 1.19126 0.94510 0.90765 0.97275 1.21296 0.91564 0.93129 1.49902 0.92642 1.25019 0.98934 0.95194 0.95305 1.69974 1.34611 0.98373 1.50576 0.86547 0.85604 0.78349 0.77585 1.19725 1.21033 1.20973 1.21337 0.92465 0.92321 0.99558 1.21205 1.02972 0.98233 0.96191 1.16992 0.93394 0.80990 0.93886 1.91552 1.78337 1.44024 1.96938 0.84979 0.84799 0.84769 0.82624 0.90599 0.90738 0.93177 0.92996 0.96413 0.96530 0.93062 0.83987 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.74 10.79 101.05 1.09 -2.65 16 2 S 2.50 26.48 5.45 -107.50 -0.59 25.89 16 3 O -0.93 -13.03 17.36 -57.54 -1.00 -14.03 16 4 O -0.93 -12.45 16.74 -57.54 -0.96 -13.41 16 5 C -0.69 -8.28 5.58 -39.51 -0.22 -8.50 16 6 C 0.00 0.04 9.15 -39.59 -0.36 -0.33 16 7 C -0.09 -1.20 5.13 -104.61 -0.54 -1.74 16 8 C -0.09 -1.32 5.34 -27.88 -0.15 -1.47 16 9 C -0.11 -2.10 5.13 -26.73 -0.14 -2.24 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.04 -0.44 9.70 -39.59 -0.38 -0.83 16 20 C -0.17 -1.77 10.03 -39.51 -0.40 -2.17 16 21 C 0.17 1.95 7.19 -39.42 -0.28 1.67 16 22 F -0.13 -1.45 15.74 2.25 0.04 -1.41 16 23 H 0.13 0.65 7.59 -51.92 -0.39 0.26 16 24 H 0.13 0.52 8.14 -51.92 -0.42 0.09 16 25 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.16 1.97 7.21 -52.49 -0.38 1.59 16 27 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 28 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -35.02 319.01 -8.45 -43.48 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -4.54 Total: -4.63 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: -1.93 Total: -31.37 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.96 Total: -27.44 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 26.48 SS G_CDS: -0.59 Total: 25.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.02 -8.45 -43.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.538 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds