Wall clock time and date at job start Tue Mar 31 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42100 * 110.54086 * 2 1 4 4 O 1.42098 * 110.54465 * 223.24927 * 2 1 3 5 5 C 1.76200 * 104.44880 * 111.62153 * 2 1 3 6 6 C 1.38226 * 120.00681 * 114.99989 * 5 2 1 7 7 C 1.38225 * 120.02224 * 180.02562 * 6 5 2 8 8 C 1.50703 * 119.97318 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46946 * 90.00140 * 8 7 6 10 10 C 1.52997 * 109.46947 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 C 1.38266 * 120.05219 * 0.25319 * 7 6 5 20 20 C 1.38181 * 120.02284 * 359.45157 * 19 7 6 21 21 C 1.38435 * 120.01630 * 295.02501 * 5 2 1 22 22 F 1.35095 * 120.02626 * 0.02562 * 21 5 2 23 23 H 1.09000 * 109.46930 * 308.37505 * 1 2 3 24 24 H 1.08999 * 109.46829 * 68.37470 * 1 2 3 25 25 H 1.08991 * 109.46786 * 188.37678 * 1 2 3 26 26 H 1.07991 * 119.98813 * 0.02562 * 6 5 2 27 27 H 1.08992 * 109.46894 * 329.99859 * 8 7 6 28 28 H 1.08996 * 109.46805 * 210.00009 * 8 7 6 29 29 H 1.09001 * 109.47372 * 60.00128 * 9 8 7 30 30 H 1.09004 * 109.47108 * 299.99872 * 9 8 7 31 31 H 1.09001 * 109.46832 * 59.99979 * 10 9 8 32 32 H 1.09000 * 109.47611 * 300.00276 * 10 9 8 33 33 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 34 34 H 1.07996 * 119.98928 * 179.72516 * 19 7 6 35 35 H 1.08007 * 120.00959 * 180.27624 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3128 -0.9692 -0.9117 5 6 2.2537 -0.6287 1.5862 6 6 2.9161 -1.8374 1.6914 7 6 3.2606 -2.3311 2.9357 8 6 3.9823 -3.6493 3.0491 9 6 5.4927 -3.4089 3.0093 10 6 6.2253 -4.7470 3.1252 11 6 7.7131 -4.5103 3.0853 12 1 8.0976 -3.5059 2.9876 13 6 8.5833 -5.5761 3.1736 14 7 8.1150 -6.7993 3.2921 15 14 10.4275 -5.2826 3.1249 16 1 10.6938 -3.8282 2.9868 17 1 11.0415 -5.7815 4.3816 18 1 11.0132 -6.0047 1.9671 19 6 2.9387 -1.6194 4.0765 20 6 2.2820 -0.4080 3.9734 21 6 1.9355 0.0873 2.7275 22 9 1.2872 1.2682 2.6258 23 1 -0.3633 0.6380 0.8057 24 1 -0.3633 0.3787 -0.9553 25 1 -0.3632 -1.0166 0.1497 26 1 3.1644 -2.3961 0.8013 27 1 3.6948 -4.2935 2.2183 28 1 3.7155 -4.1296 3.9905 29 1 5.7801 -2.7646 3.8402 30 1 5.7594 -2.9285 2.0679 31 1 5.9379 -5.3916 2.2945 32 1 5.9585 -5.2271 4.0667 33 1 8.7273 -7.5491 3.3546 34 1 3.2044 -2.0083 5.0483 35 1 2.0345 0.1499 4.8645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:20 Heat of formation + Delta-G solvation = -129.218819 kcal Electronic energy + Delta-G solvation = -19883.514973 eV Core-core repulsion = 16500.955083 eV Total energy + Delta-G solvation = -3382.559889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.28756 -40.39102 -38.17210 -37.06478 -36.44821 -34.51296 -32.54427 -31.81320 -30.37794 -28.39881 -25.46110 -24.69373 -23.06306 -21.86480 -19.98872 -19.09452 -18.48703 -18.00091 -17.80028 -17.32017 -16.76712 -16.54546 -16.48498 -15.76955 -15.45636 -15.14090 -14.59158 -14.48068 -14.29650 -14.07884 -13.96923 -13.52428 -13.35635 -13.19860 -13.12571 -13.10082 -12.89220 -12.61679 -12.41609 -12.33122 -12.06895 -11.73417 -11.43921 -11.32881 -11.15997 -10.55872 -10.51592 -9.70425 -8.20466 -6.30885 -0.96919 -0.39353 0.03077 1.38866 1.39919 1.52734 1.76466 2.22641 2.40960 2.81320 2.89495 3.12804 3.16899 3.59312 3.71359 4.03200 4.06493 4.08742 4.17812 4.31367 4.50029 4.53870 4.66923 4.70856 4.87706 4.94438 4.96668 4.99382 5.23054 5.25142 5.42483 5.53482 5.68611 5.77822 5.87445 6.26334 6.86303 7.38348 8.91155 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.003444 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.716766 B = 8128.089701 C = 8529.629868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.620 4.620 2 S 2.496 3.504 3 O -0.973 6.973 4 O -0.970 6.970 5 C -0.697 4.697 6 C -0.012 4.012 7 C -0.105 4.105 8 C -0.077 4.077 9 C -0.095 4.095 10 C 0.023 3.977 11 C -0.545 4.545 12 H 0.055 0.945 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.961 3.039 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.278 1.278 19 C -0.037 4.037 20 C -0.161 4.161 21 C 0.164 3.836 22 F -0.126 7.126 23 H 0.149 0.851 24 H 0.162 0.838 25 H 0.159 0.841 26 H 0.149 0.851 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.042 0.958 31 H -0.006 1.006 32 H 0.000 1.000 33 H 0.264 0.736 34 H 0.163 0.837 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 14.024 -1.174 24.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.774 4.774 2 S 2.679 3.321 3 O -0.970 6.970 4 O -0.967 6.967 5 C -0.782 4.782 6 C -0.031 4.031 7 C -0.106 4.106 8 C -0.114 4.114 9 C -0.133 4.133 10 C -0.015 4.015 11 C -0.583 4.583 12 H 0.073 0.927 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.786 3.214 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.204 1.204 19 C -0.055 4.055 20 C -0.180 4.180 21 C 0.143 3.857 22 F -0.104 7.104 23 H 0.168 0.832 24 H 0.180 0.820 25 H 0.177 0.823 26 H 0.167 0.833 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.012 0.988 32 H 0.018 0.982 33 H 0.073 0.927 34 H 0.181 0.819 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -20.012 14.153 -1.784 24.576 hybrid contribution 0.766 -0.348 0.589 1.027 sum -19.247 13.806 -1.195 23.716 Atomic orbital electron populations 1.30009 1.18448 1.14554 1.14384 1.05204 0.80621 0.73218 0.73107 1.93561 1.79788 1.37631 1.86000 1.93549 1.79891 1.62092 1.61160 1.30576 1.18930 1.07899 1.20818 1.20903 0.91045 0.92003 0.99160 1.20292 0.98814 0.98059 0.93434 1.20657 0.93912 0.92965 1.03853 1.21464 0.93333 0.98058 1.00427 1.19042 0.94030 0.93122 0.95261 1.21751 0.93392 0.93263 1.49884 0.92670 1.25924 1.04018 0.94907 0.94793 1.70089 1.36441 0.99276 1.51345 0.85457 0.79510 0.78547 0.77895 1.18965 1.20109 1.20408 1.21574 0.91834 0.92328 0.99719 1.21541 1.01668 0.97832 0.96917 1.17165 0.93308 0.81008 0.94199 1.91562 1.78178 1.43751 1.96953 0.83237 0.82032 0.82313 0.83335 0.90774 0.89596 0.92787 0.93899 0.98800 0.98199 0.92749 0.81909 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -4.97 10.79 113.37 1.22 -3.75 16 2 S 2.50 51.37 5.45 -56.49 -0.31 51.06 16 3 O -0.97 -27.28 17.36 -127.65 -2.22 -29.50 16 4 O -0.97 -26.51 16.74 -127.65 -2.14 -28.64 16 5 C -0.70 -16.12 5.58 22.31 0.12 -15.99 16 6 C -0.01 -0.33 9.15 22.26 0.20 -0.12 16 7 C -0.10 -2.73 5.13 -19.86 -0.10 -2.83 16 8 C -0.08 -2.34 5.34 29.85 0.16 -2.18 16 9 C -0.10 -3.81 5.13 30.59 0.16 -3.65 16 10 C 0.02 1.17 4.97 29.85 0.15 1.32 16 11 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 12 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 13 C 0.00 0.08 5.46 84.65 0.46 0.54 16 14 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 15 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 C -0.04 -0.76 9.70 22.26 0.22 -0.55 16 20 C -0.16 -2.97 10.03 22.31 0.22 -2.75 16 21 C 0.16 3.48 7.19 22.37 0.16 3.64 16 22 F -0.13 -2.51 15.74 44.97 0.71 -1.81 16 23 H 0.15 0.84 7.59 -2.39 -0.02 0.82 16 24 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.16 0.65 8.14 -2.40 -0.02 0.63 16 26 H 0.15 3.97 7.21 -2.92 -0.02 3.95 16 27 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 28 H 0.09 2.40 8.08 -2.39 -0.02 2.38 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 31 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 35 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -77.35 319.01 2.66 -74.70 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.09 Total: 1.08 kcal Atomic # 6 Polarization: -60.62 SS G_CDS: 3.21 Total: -57.41 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.24 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -4.35 Total: -58.14 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.71 Total: -1.81 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 51.37 SS G_CDS: -0.31 Total: 51.06 kcal Total: -77.35 2.66 -74.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.522 kcal (2) G-P(sol) polarization free energy of solvation -77.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds