Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.55295 * 2 1 4 4 C 1.52997 * 117.49797 * 214.28425 * 2 1 3 5 5 H 1.09002 * 117.49884 * 0.02562 * 4 2 1 6 6 C 1.50702 * 117.49669 * 145.02483 * 4 2 1 7 7 O 1.20824 * 120.00231 * 0.02562 * 6 4 2 8 8 O 1.34229 * 120.00145 * 180.02562 * 6 4 2 9 9 C 1.45205 * 117.00182 * 179.97438 * 8 6 4 10 10 H 1.08993 * 109.46995 * 330.00535 * 9 8 6 11 11 C 1.50696 * 109.46591 * 90.00056 * 9 8 6 12 12 H 1.07996 * 119.99965 * 239.99783 * 11 9 8 13 13 C 1.37887 * 119.99951 * 60.00289 * 11 9 8 14 14 N 1.31511 * 119.99688 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99685 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47133 * 90.00262 * 15 13 11 17 17 H 1.48504 * 109.46779 * 209.99697 * 15 13 11 18 18 H 1.48498 * 109.47382 * 329.99902 * 15 13 11 19 19 C 1.50693 * 109.47065 * 210.00290 * 9 8 6 20 20 C 1.34519 * 125.78945 * 145.00628 * 19 9 8 21 21 C 1.41387 * 106.84026 * 179.97438 * 20 19 9 22 22 C 1.34512 * 106.83861 * 0.02562 * 21 20 19 23 23 O 1.34302 * 108.42417 * 359.73047 * 22 21 20 24 24 C 1.53000 * 60.00347 * 252.51337 * 4 2 1 25 25 F 1.39894 * 117.49876 * 252.51230 * 24 4 2 26 26 F 1.39897 * 117.49410 * 107.48833 * 24 4 2 27 27 H 1.08998 * 109.47358 * 325.72884 * 1 2 3 28 28 H 1.09002 * 109.46900 * 85.72531 * 1 2 3 29 29 H 1.09004 * 109.47569 * 205.72145 * 1 2 3 30 30 H 0.97004 * 119.99665 * 179.97438 * 14 13 11 31 31 H 1.07994 * 126.57703 * 0.03046 * 20 19 9 32 32 H 1.07997 * 126.57586 * 179.97438 * 21 20 19 33 33 H 1.08001 * 125.78400 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7645 5 1 1.6111 -1.8588 -1.2678 6 6 3.5293 -0.7818 -1.4604 7 8 3.9704 0.3415 -1.4011 8 8 4.1908 -1.7272 -2.1461 9 6 5.4289 -1.3286 -2.7917 10 1 5.3717 -0.2761 -3.0687 11 6 6.5800 -1.5361 -1.8415 12 1 7.1931 -0.6979 -1.5448 13 6 6.8507 -2.7960 -1.3510 14 7 6.1038 -3.8165 -1.7120 15 14 8.2780 -3.0532 -0.1737 16 1 7.8045 -2.8819 1.2232 17 1 8.8220 -4.4241 -0.3474 18 1 9.3423 -2.0582 -0.4612 19 6 5.6417 -2.1628 -4.0285 20 6 6.2037 -1.7403 -5.1752 21 6 6.2034 -2.8418 -6.0617 22 6 5.6407 -3.8712 -5.4038 23 8 5.3075 -3.4558 -4.1709 24 6 2.2364 -1.1207 0.7655 25 9 3.4365 -0.8050 1.4113 26 9 1.4338 -2.0670 1.4117 27 1 -0.3634 0.8492 0.5787 28 1 -0.3633 0.0766 -1.0248 29 1 -0.3634 -0.9258 0.4460 30 1 6.2944 -4.7030 -1.3672 31 1 6.5833 -0.7501 -5.3793 32 1 6.5815 -2.8539 -7.0732 33 1 5.4875 -4.8649 -5.7984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660263.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = -132.383532 kcal Electronic energy + Delta-G solvation = -23070.235447 eV Core-core repulsion = 19121.325150 eV Total energy + Delta-G solvation = -3948.910298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.52086 -47.17064 -41.34772 -39.51082 -36.75294 -35.19838 -32.98955 -31.86608 -29.98734 -28.87263 -26.60209 -24.50050 -22.80658 -21.20029 -20.66689 -19.78455 -19.48249 -17.88827 -17.07984 -16.80031 -16.52080 -16.04152 -15.83915 -15.02485 -14.87941 -14.49358 -14.30666 -13.83471 -13.62577 -13.45818 -13.20178 -13.03251 -12.88362 -12.56131 -12.00419 -11.81830 -11.76568 -11.60145 -11.35212 -11.11766 -11.00476 -10.63858 -10.40658 -9.97042 -9.88310 -9.63240 -9.15696 -8.85732 -8.78388 -7.37709 -6.25461 -4.47689 2.51791 2.85298 2.99453 3.20046 3.27337 3.30893 3.37255 3.63933 3.76722 4.22622 4.25223 4.26892 4.59949 4.74696 5.06232 5.07630 5.39646 5.48249 5.54459 5.73573 5.79945 5.87273 5.94774 6.07735 6.29856 6.39879 6.77407 6.85550 7.16450 7.43586 7.57608 7.65682 7.76113 8.37124 8.52072 8.83756 9.26379 10.73618 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.006597 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.144058 B = 4243.237811 C = 5241.229895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 H 0.143 0.857 4 C -0.161 4.161 5 H 0.152 0.848 6 C 0.491 3.509 7 O -0.516 6.516 8 O -0.326 6.326 9 C 0.278 3.722 10 H 0.073 0.927 11 C -0.548 4.548 12 H 0.076 0.924 13 C 0.080 3.920 14 N -0.825 5.825 15 Si 0.898 3.102 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.080 3.920 20 C -0.263 4.263 21 C -0.221 4.221 22 C -0.081 4.081 23 O -0.117 6.117 24 C 0.226 3.774 25 F -0.147 7.147 26 F -0.156 7.156 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.268 0.732 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.274 2.699 -0.405 9.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 H 0.161 0.839 4 C -0.181 4.181 5 H 0.170 0.830 6 C 0.333 3.667 7 O -0.407 6.407 8 O -0.241 6.241 9 C 0.227 3.773 10 H 0.091 0.909 11 C -0.584 4.584 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.457 5.457 15 Si 0.724 3.276 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.193 1.193 19 C 0.027 3.973 20 C -0.282 4.282 21 C -0.240 4.240 22 C -0.150 4.150 23 O -0.009 6.009 24 C 0.189 3.811 25 F -0.127 7.127 26 F -0.136 7.136 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.259 2.579 -0.151 9.613 hybrid contribution 1.274 -0.489 0.514 1.459 sum -7.985 2.090 0.363 8.262 Atomic orbital electron populations 1.21424 0.90170 1.03484 1.03419 1.23822 0.97359 0.96355 0.96430 0.83933 1.23393 0.98194 1.03824 0.92700 0.83000 1.21563 0.83666 0.83676 0.77825 1.90564 1.67519 1.22992 1.59577 1.86737 1.37489 1.40233 1.59605 1.18870 0.80998 0.91371 0.86089 0.90898 1.21254 1.13649 0.95116 1.28369 0.90618 1.25176 0.96319 0.95826 0.95748 1.70039 1.36250 0.99848 1.39570 0.86485 0.82095 0.77813 0.81226 1.19998 1.20729 1.19312 1.22759 0.97938 0.82003 0.94628 1.21164 1.12352 1.00630 0.94074 1.21495 1.07785 0.94044 1.00687 1.23799 1.06294 0.99872 0.85051 1.84418 1.62491 1.24978 1.28980 1.19819 0.81333 0.93381 0.86540 1.93102 1.44317 1.92338 1.82940 1.93003 1.71921 1.65605 1.83073 0.90775 0.90483 0.91172 0.92171 0.84873 0.85111 0.79986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 10.16 37.16 0.38 -0.83 16 2 C -0.12 -1.63 5.90 -90.62 -0.54 -2.16 16 3 H 0.14 1.96 7.67 -51.93 -0.40 1.56 16 4 C -0.16 -2.72 6.01 -91.77 -0.55 -3.27 16 5 H 0.15 2.19 8.14 -51.93 -0.42 1.77 16 6 C 0.49 10.84 7.34 36.01 0.26 11.10 16 7 O -0.52 -12.12 15.48 -18.75 -0.29 -12.41 16 8 O -0.33 -8.21 9.25 -42.01 -0.39 -8.59 16 9 C 0.28 7.17 2.58 -29.04 -0.07 7.10 16 10 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 11 C -0.55 -15.13 8.90 -34.44 -0.31 -15.43 16 12 H 0.08 2.08 7.81 -52.49 -0.41 1.67 16 13 C 0.08 2.19 5.24 -17.82 -0.09 2.10 16 14 N -0.82 -22.86 10.62 55.43 0.59 -22.27 16 15 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 19 C 0.08 1.98 5.59 -35.63 -0.20 1.78 16 20 C -0.26 -5.76 10.81 -39.70 -0.43 -6.19 16 21 C -0.22 -4.31 10.91 -39.70 -0.43 -4.75 16 22 C -0.08 -1.63 12.09 29.42 0.36 -1.27 16 23 O -0.12 -2.88 8.87 2.19 0.02 -2.86 16 24 C 0.23 3.80 5.14 -26.73 -0.14 3.66 16 25 F -0.15 -2.94 17.13 2.25 0.04 -2.90 16 26 F -0.16 -2.46 16.50 2.25 0.04 -2.42 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.65 7.10 -51.93 -0.37 0.29 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 32 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.18 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 306.02 15.07 4.61 4.61 Total: -1.00 -31.33 306.02 -5.39 -36.72 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.22 Total: 2.14 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.76 Total: -8.17 kcal Atomic # 7 Polarization: -22.86 SS G_CDS: 0.59 Total: -22.27 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.66 Total: -23.87 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.08 Total: -5.32 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.33 -5.39 -36.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660263.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.665 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds