Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.55295 * 2 1 4 4 C 1.52997 * 117.49797 * 214.28425 * 2 1 3 5 5 H 1.09002 * 117.49884 * 0.02562 * 4 2 1 6 6 C 1.50702 * 117.49669 * 145.02483 * 4 2 1 7 7 O 1.20824 * 120.00231 * 0.02562 * 6 4 2 8 8 O 1.34229 * 120.00145 * 180.02562 * 6 4 2 9 9 C 1.45205 * 117.00182 * 179.97438 * 8 6 4 10 10 H 1.08993 * 109.46995 * 330.00535 * 9 8 6 11 11 C 1.50696 * 109.46591 * 90.00056 * 9 8 6 12 12 H 1.07996 * 119.99965 * 239.99783 * 11 9 8 13 13 C 1.37887 * 119.99951 * 60.00289 * 11 9 8 14 14 N 1.31511 * 119.99688 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99685 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47133 * 90.00262 * 15 13 11 17 17 H 1.48504 * 109.46779 * 209.99697 * 15 13 11 18 18 H 1.48498 * 109.47382 * 329.99902 * 15 13 11 19 19 C 1.50693 * 109.47065 * 210.00290 * 9 8 6 20 20 C 1.34519 * 125.78945 * 145.00628 * 19 9 8 21 21 C 1.41387 * 106.84026 * 179.97438 * 20 19 9 22 22 C 1.34512 * 106.83861 * 0.02562 * 21 20 19 23 23 O 1.34302 * 108.42417 * 359.73047 * 22 21 20 24 24 C 1.53000 * 60.00347 * 252.51337 * 4 2 1 25 25 F 1.39894 * 117.49876 * 252.51230 * 24 4 2 26 26 F 1.39897 * 117.49410 * 107.48833 * 24 4 2 27 27 H 1.08998 * 109.47358 * 325.72884 * 1 2 3 28 28 H 1.09002 * 109.46900 * 85.72531 * 1 2 3 29 29 H 1.09004 * 109.47569 * 205.72145 * 1 2 3 30 30 H 0.97004 * 119.99665 * 179.97438 * 14 13 11 31 31 H 1.07994 * 126.57703 * 0.03046 * 20 19 9 32 32 H 1.07997 * 126.57586 * 179.97438 * 21 20 19 33 33 H 1.08001 * 125.78400 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7645 5 1 1.6111 -1.8588 -1.2678 6 6 3.5293 -0.7818 -1.4604 7 8 3.9704 0.3415 -1.4011 8 8 4.1908 -1.7272 -2.1461 9 6 5.4289 -1.3286 -2.7917 10 1 5.3717 -0.2761 -3.0687 11 6 6.5800 -1.5361 -1.8415 12 1 7.1931 -0.6979 -1.5448 13 6 6.8507 -2.7960 -1.3510 14 7 6.1038 -3.8165 -1.7120 15 14 8.2780 -3.0532 -0.1737 16 1 7.8045 -2.8819 1.2232 17 1 8.8220 -4.4241 -0.3474 18 1 9.3423 -2.0582 -0.4612 19 6 5.6417 -2.1628 -4.0285 20 6 6.2037 -1.7403 -5.1752 21 6 6.2034 -2.8418 -6.0617 22 6 5.6407 -3.8712 -5.4038 23 8 5.3075 -3.4558 -4.1709 24 6 2.2364 -1.1207 0.7655 25 9 3.4365 -0.8050 1.4113 26 9 1.4338 -2.0670 1.4117 27 1 -0.3634 0.8492 0.5787 28 1 -0.3633 0.0766 -1.0248 29 1 -0.3634 -0.9258 0.4460 30 1 6.2944 -4.7030 -1.3672 31 1 6.5833 -0.7501 -5.3793 32 1 6.5815 -2.8539 -7.0732 33 1 5.4875 -4.8649 -5.7984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660263.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = -149.703324 kcal Electronic energy + Delta-G solvation = -23070.986490 eV Core-core repulsion = 19121.325150 eV Total energy + Delta-G solvation = -3949.661340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.87953 -48.55969 -43.05587 -41.25435 -38.23582 -36.89567 -34.99529 -33.57888 -31.78234 -29.89547 -28.43715 -26.14057 -24.55992 -22.54065 -22.21827 -21.31928 -21.22051 -19.46252 -18.88479 -18.42579 -18.08762 -17.66584 -17.22852 -16.98184 -16.46340 -16.27680 -16.08927 -15.21879 -15.10356 -14.81816 -14.63009 -14.56854 -13.99140 -13.87781 -13.58708 -13.49299 -13.36705 -13.08751 -13.03447 -12.89600 -12.70788 -12.27641 -11.90968 -11.78494 -11.59676 -11.09334 -11.06067 -10.83169 -10.50015 -9.09640 -8.27899 -6.58119 0.93944 1.14793 1.32492 1.36208 1.43720 1.69263 1.84457 2.00662 2.26524 2.30314 2.58025 2.98609 3.01880 3.37131 3.42193 3.84359 4.07308 4.30025 4.38473 4.41523 4.44424 4.49044 4.63384 4.86672 4.98473 5.12766 5.22130 5.28585 5.41093 5.52421 5.73978 5.80653 5.91542 6.45435 6.68291 6.97869 7.19744 8.69549 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.006597 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.144058 B = 4243.237811 C = 5241.229895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 H 0.141 0.859 4 C -0.175 4.175 5 H 0.177 0.823 6 C 0.480 3.520 7 O -0.538 6.538 8 O -0.343 6.343 9 C 0.278 3.722 10 H 0.064 0.936 11 C -0.576 4.576 12 H 0.062 0.938 13 C 0.041 3.959 14 N -0.844 5.844 15 Si 0.952 3.048 16 H -0.277 1.277 17 H -0.270 1.270 18 H -0.265 1.265 19 C 0.039 3.961 20 C -0.262 4.262 21 C -0.217 4.217 22 C -0.081 4.081 23 O -0.147 6.147 24 C 0.205 3.795 25 F -0.173 7.173 26 F -0.149 7.149 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.269 0.731 31 H 0.147 0.853 32 H 0.171 0.829 33 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 2.323 -1.097 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 H 0.159 0.841 4 C -0.195 4.195 5 H 0.194 0.806 6 C 0.324 3.676 7 O -0.430 6.430 8 O -0.258 6.258 9 C 0.225 3.775 10 H 0.082 0.918 11 C -0.612 4.612 12 H 0.080 0.920 13 C -0.167 4.167 14 N -0.476 5.476 15 Si 0.776 3.224 16 H -0.202 1.202 17 H -0.195 1.195 18 H -0.189 1.189 19 C -0.013 4.013 20 C -0.281 4.281 21 C -0.236 4.236 22 C -0.149 4.149 23 O -0.040 6.040 24 C 0.168 3.832 25 F -0.154 7.154 26 F -0.130 7.130 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.165 0.835 32 H 0.188 0.812 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.292 2.211 -0.847 10.561 hybrid contribution 1.539 -0.348 0.649 1.706 sum -8.753 1.863 -0.198 8.951 Atomic orbital electron populations 1.21566 0.86311 1.04924 1.05251 1.24019 0.99761 0.94568 0.91372 0.84127 1.23532 0.96345 1.07062 0.92556 0.80567 1.22483 0.84867 0.83060 0.77183 1.90530 1.68575 1.23735 1.60178 1.86699 1.37474 1.41327 1.60341 1.18717 0.80800 0.91428 0.86512 0.91813 1.21410 1.14730 0.95163 1.29904 0.91991 1.25806 0.98461 0.95492 0.96988 1.70143 1.37278 0.99908 1.40315 0.85649 0.79537 0.78183 0.79023 1.20244 1.19503 1.18939 1.22654 1.00742 0.82629 0.95293 1.21561 1.10756 1.02026 0.93762 1.21904 1.07139 0.92596 1.01996 1.24730 1.04882 1.01759 0.83576 1.84352 1.63419 1.24985 1.31234 1.20227 0.81390 0.95588 0.85950 1.93041 1.46278 1.92630 1.83404 1.93009 1.71381 1.65699 1.82865 0.88283 0.88506 0.90638 0.92186 0.83548 0.81155 0.75881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 10.16 71.98 0.73 -1.17 16 2 C -0.08 -1.98 5.90 -10.79 -0.06 -2.04 16 3 H 0.14 3.68 7.67 -2.39 -0.02 3.67 16 4 C -0.18 -5.84 6.01 -11.54 -0.07 -5.91 16 5 H 0.18 4.87 8.14 -2.39 -0.02 4.85 16 6 C 0.48 21.81 7.34 71.24 0.52 22.34 16 7 O -0.54 -26.19 15.48 21.97 0.34 -25.85 16 8 O -0.34 -17.92 9.25 -48.77 -0.45 -18.37 16 9 C 0.28 14.88 2.58 29.10 0.07 14.96 16 10 H 0.06 3.37 7.16 -2.39 -0.02 3.36 16 11 C -0.58 -33.01 8.90 25.60 0.23 -32.78 16 12 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 13 C 0.04 2.30 5.24 84.66 0.44 2.75 16 14 N -0.84 -47.62 10.62 21.45 0.23 -47.39 16 15 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 C 0.04 1.98 5.59 24.83 0.14 2.12 16 20 C -0.26 -11.34 10.81 22.19 0.24 -11.10 16 21 C -0.22 -7.96 10.91 22.19 0.24 -7.72 16 22 C -0.08 -3.12 12.09 66.97 0.81 -2.31 16 23 O -0.15 -7.24 8.87 0.88 0.01 -7.24 16 24 C 0.21 6.81 5.14 30.60 0.16 6.96 16 25 F -0.17 -7.10 17.13 44.97 0.77 -6.33 16 26 F -0.15 -4.54 16.50 44.97 0.74 -3.80 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.14 7.10 -2.38 -0.02 1.12 16 30 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.15 5.74 8.06 -2.91 -0.02 5.72 16 32 H 0.17 4.77 8.06 -2.91 -0.02 4.74 16 33 H 0.22 6.28 8.06 -2.91 -0.02 6.26 16 Total: -1.00 -70.47 306.02 8.26 -62.21 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.15 Total: 14.54 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 3.46 Total: -13.91 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.23 Total: -47.39 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.10 Total: -51.46 kcal Atomic # 9 Polarization: -11.65 SS G_CDS: 1.51 Total: -10.13 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -70.47 8.26 -62.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660263.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.493 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds