Wall clock time and date at job start Tue Mar 31 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 115.56264 * 2 1 4 4 C 1.53001 * 117.49922 * 214.31394 * 2 1 3 5 5 H 1.09000 * 117.49766 * 0.02562 * 4 2 1 6 6 C 1.50701 * 117.49839 * 145.01507 * 4 2 1 7 7 O 1.20825 * 119.99804 * 0.02562 * 6 4 2 8 8 O 1.34225 * 119.99820 * 179.97438 * 6 4 2 9 9 C 1.45200 * 116.99985 * 180.02562 * 8 6 4 10 10 H 1.09006 * 109.47047 * 30.00629 * 9 8 6 11 11 C 1.50697 * 109.47541 * 270.00604 * 9 8 6 12 12 H 1.07991 * 120.00449 * 119.72153 * 11 9 8 13 13 C 1.37885 * 119.99686 * 299.99985 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 9 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 C 1.50707 * 109.47338 * 150.00076 * 9 8 6 20 20 C 1.34507 * 125.79145 * 219.71572 * 19 9 8 21 21 C 1.41384 * 106.83966 * 179.89181 * 20 19 9 22 22 C 1.34506 * 106.84126 * 0.37077 * 21 20 19 23 23 O 1.34302 * 125.78328 * 40.02893 * 19 9 8 24 24 C 1.52994 * 117.50058 * 145.69111 * 2 1 3 25 25 F 1.39897 * 117.49854 * 0.02562 * 24 2 1 26 26 F 1.39901 * 117.50107 * 214.97794 * 24 2 1 27 27 H 1.08993 * 109.46740 * 205.68695 * 1 2 3 28 28 H 1.08994 * 109.47096 * 325.68585 * 1 2 3 29 29 H 1.09000 * 109.46895 * 85.68885 * 1 2 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 31 31 H 1.07998 * 126.58077 * 0.03407 * 20 19 9 32 32 H 1.08002 * 126.57911 * 180.17547 * 21 20 19 33 33 H 1.08004 * 125.79590 * 179.79175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7651 5 1 1.6113 -1.8582 -1.2687 6 6 3.5293 -0.7810 -1.4610 7 8 3.9702 0.3423 -1.4012 8 8 4.1912 -1.7264 -2.1463 9 6 5.4298 -1.3277 -2.7909 10 1 5.8951 -0.5249 -2.2189 11 6 5.1362 -0.8443 -4.1877 12 1 5.3859 0.1669 -4.4728 13 6 4.5436 -1.6914 -5.1001 14 7 4.2395 -2.9229 -4.7529 15 14 4.1727 -1.0898 -6.8292 16 1 4.6082 0.3232 -6.9658 17 1 4.9017 -1.9302 -7.8127 18 1 2.7126 -1.1841 -7.0835 19 6 6.3657 -2.5073 -2.8538 20 6 7.6946 -2.4688 -2.6497 21 6 8.1710 -3.7911 -2.8027 22 6 7.1059 -4.5572 -3.0993 23 8 6.0150 -3.7742 -3.1290 24 6 2.2365 -1.1210 0.7649 25 9 1.4341 -2.0678 1.4104 26 9 3.4367 -0.8055 1.4109 27 1 -0.3632 -0.9261 0.4454 28 1 -0.3633 0.8488 0.5793 29 1 -0.3633 0.0773 -1.0248 30 1 3.8229 -3.5189 -5.3948 31 1 8.2843 -1.5958 -2.4120 32 1 9.1943 -4.1221 -2.7039 33 1 7.1245 -5.6214 -3.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:51 Heat of formation + Delta-G solvation = -131.981634 kcal Electronic energy + Delta-G solvation = -22977.833021 eV Core-core repulsion = 19028.940151 eV Total energy + Delta-G solvation = -3948.892870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.63721 -47.29838 -41.33105 -39.52425 -36.77477 -35.20934 -33.01026 -31.85768 -29.98718 -28.87694 -26.61388 -24.53558 -22.80744 -21.26321 -20.65392 -19.81075 -19.48000 -17.96766 -17.01376 -16.91645 -16.59417 -16.08820 -15.70028 -15.22159 -14.97751 -14.46743 -14.21379 -13.94120 -13.66830 -13.54945 -13.26762 -13.07070 -12.88149 -12.60843 -11.94745 -11.83203 -11.76427 -11.61566 -11.35872 -11.15582 -11.05887 -10.64071 -10.40991 -10.03681 -9.89223 -9.66401 -9.13766 -8.87969 -8.79735 -7.38237 -6.28477 -4.50934 2.47392 2.84246 2.95680 3.14696 3.23615 3.28694 3.35374 3.65129 3.69601 4.20506 4.24049 4.25341 4.55384 4.69866 5.03642 5.06587 5.42008 5.48211 5.57667 5.70919 5.82117 5.87893 5.95578 6.08046 6.29557 6.40020 6.78125 6.85679 7.17191 7.43554 7.55871 7.64078 7.74535 8.38939 8.49967 8.82473 9.22803 10.70373 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.006385 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.379381 B = 4384.119476 C = 5470.378306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 H 0.143 0.857 4 C -0.158 4.158 5 H 0.155 0.845 6 C 0.491 3.509 7 O -0.515 6.515 8 O -0.326 6.326 9 C 0.278 3.722 10 H 0.073 0.927 11 C -0.548 4.548 12 H 0.076 0.924 13 C 0.079 3.921 14 N -0.823 5.823 15 Si 0.899 3.101 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.078 3.922 20 C -0.263 4.263 21 C -0.222 4.222 22 C -0.081 4.081 23 O -0.112 6.112 24 C 0.220 3.780 25 F -0.155 7.155 26 F -0.152 7.152 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.268 0.732 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 0.463 7.016 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.136 4.136 3 H 0.161 0.839 4 C -0.178 4.178 5 H 0.173 0.827 6 C 0.333 3.667 7 O -0.406 6.406 8 O -0.241 6.241 9 C 0.226 3.774 10 H 0.091 0.909 11 C -0.584 4.584 12 H 0.094 0.906 13 C -0.132 4.132 14 N -0.456 5.456 15 Si 0.725 3.275 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.205 1.205 19 C 0.024 3.976 20 C -0.283 4.283 21 C -0.241 4.241 22 C -0.150 4.150 23 O -0.003 6.003 24 C 0.183 3.817 25 F -0.135 7.135 26 F -0.133 7.133 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.899 0.447 6.928 8.497 hybrid contribution 0.349 -0.040 -0.975 1.036 sum -4.550 0.407 5.954 7.504 Atomic orbital electron populations 1.21430 0.90110 1.03415 1.03619 1.23815 0.97507 0.96323 0.95999 0.83890 1.23425 0.98423 1.04050 0.91924 0.82734 1.21543 0.84352 0.84105 0.76689 1.90567 1.67365 1.22563 1.60094 1.86733 1.38112 1.40599 1.58633 1.18869 0.78276 0.86811 0.93434 0.90909 1.21316 1.43051 0.99656 0.94365 0.90557 1.25197 0.94146 0.94599 0.99292 1.70055 1.35770 1.04725 1.35028 0.86416 0.78268 0.79469 0.83342 1.19215 1.20504 1.20463 1.22723 0.93982 0.83799 0.97104 1.21193 0.94210 0.97876 1.14980 1.21493 0.99079 0.93747 1.09786 1.23829 0.85830 0.96905 1.08469 1.84472 1.32983 1.17073 1.65793 1.19924 0.81365 0.93826 0.86572 1.93008 1.71907 1.65498 1.83102 1.93065 1.44607 1.92479 1.83110 0.91182 0.90775 0.90310 0.92203 0.84890 0.85113 0.79985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 10.16 37.16 0.38 -0.89 16 2 C -0.12 -1.58 5.90 -90.62 -0.54 -2.12 16 3 H 0.14 1.96 7.67 -51.93 -0.40 1.56 16 4 C -0.16 -2.66 6.01 -91.77 -0.55 -3.21 16 5 H 0.16 2.35 8.14 -51.93 -0.42 1.93 16 6 C 0.49 10.84 7.34 36.01 0.26 11.10 16 7 O -0.51 -12.11 15.48 -18.75 -0.29 -12.40 16 8 O -0.33 -8.21 9.27 -41.27 -0.38 -8.59 16 9 C 0.28 7.17 2.58 -29.03 -0.07 7.09 16 10 H 0.07 1.84 7.15 -51.93 -0.37 1.47 16 11 C -0.55 -14.85 8.91 -34.44 -0.31 -15.16 16 12 H 0.08 2.06 7.81 -52.49 -0.41 1.65 16 13 C 0.08 2.09 5.25 -17.82 -0.09 1.99 16 14 N -0.82 -22.25 10.44 55.43 0.58 -21.67 16 15 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 19 C 0.08 1.94 5.68 -35.62 -0.20 1.73 16 20 C -0.26 -5.85 10.80 -39.70 -0.43 -6.28 16 21 C -0.22 -4.40 10.91 -39.70 -0.43 -4.83 16 22 C -0.08 -1.66 12.09 29.41 0.36 -1.30 16 23 O -0.11 -2.79 8.61 4.46 0.04 -2.75 16 24 C 0.22 3.43 5.14 -26.74 -0.14 3.29 16 25 F -0.15 -2.26 16.50 2.25 0.04 -2.23 16 26 F -0.15 -2.68 17.13 2.25 0.04 -2.64 16 27 H 0.07 0.66 7.10 -51.93 -0.37 0.29 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.13 2.67 8.06 -52.49 -0.42 2.24 16 32 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 33 H 0.18 2.93 8.06 -52.48 -0.42 2.50 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -30.50 305.68 -5.38 -35.88 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -3.22 Total: 2.98 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -1.77 Total: -8.57 kcal Atomic # 7 Polarization: -22.25 SS G_CDS: 0.58 Total: -21.67 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.63 Total: -23.74 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.08 Total: -4.87 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.50 -5.38 -35.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.103 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds