Wall clock time and date at job start Tue Mar 31 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 115.56264 * 2 1 4 4 C 1.53001 * 117.49922 * 214.31394 * 2 1 3 5 5 H 1.09000 * 117.49766 * 0.02562 * 4 2 1 6 6 C 1.50701 * 117.49839 * 145.01507 * 4 2 1 7 7 O 1.20825 * 119.99804 * 0.02562 * 6 4 2 8 8 O 1.34225 * 119.99820 * 179.97438 * 6 4 2 9 9 C 1.45200 * 116.99985 * 180.02562 * 8 6 4 10 10 H 1.09006 * 109.47047 * 30.00629 * 9 8 6 11 11 C 1.50697 * 109.47541 * 270.00604 * 9 8 6 12 12 H 1.07991 * 120.00449 * 119.72153 * 11 9 8 13 13 C 1.37885 * 119.99686 * 299.99985 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 9 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 C 1.50707 * 109.47338 * 150.00076 * 9 8 6 20 20 C 1.34507 * 125.79145 * 219.71572 * 19 9 8 21 21 C 1.41384 * 106.83966 * 179.89181 * 20 19 9 22 22 C 1.34506 * 106.84126 * 0.37077 * 21 20 19 23 23 O 1.34302 * 125.78328 * 40.02893 * 19 9 8 24 24 C 1.52994 * 117.50058 * 145.69111 * 2 1 3 25 25 F 1.39897 * 117.49854 * 0.02562 * 24 2 1 26 26 F 1.39901 * 117.50107 * 214.97794 * 24 2 1 27 27 H 1.08993 * 109.46740 * 205.68695 * 1 2 3 28 28 H 1.08994 * 109.47096 * 325.68585 * 1 2 3 29 29 H 1.09000 * 109.46895 * 85.68885 * 1 2 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 31 31 H 1.07998 * 126.58077 * 0.03407 * 20 19 9 32 32 H 1.08002 * 126.57911 * 180.17547 * 21 20 19 33 33 H 1.08004 * 125.79590 * 179.79175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7651 5 1 1.6113 -1.8582 -1.2687 6 6 3.5293 -0.7810 -1.4610 7 8 3.9702 0.3423 -1.4012 8 8 4.1912 -1.7264 -2.1463 9 6 5.4298 -1.3277 -2.7909 10 1 5.8951 -0.5249 -2.2189 11 6 5.1362 -0.8443 -4.1877 12 1 5.3859 0.1669 -4.4728 13 6 4.5436 -1.6914 -5.1001 14 7 4.2395 -2.9229 -4.7529 15 14 4.1727 -1.0898 -6.8292 16 1 4.6082 0.3232 -6.9658 17 1 4.9017 -1.9302 -7.8127 18 1 2.7126 -1.1841 -7.0835 19 6 6.3657 -2.5073 -2.8538 20 6 7.6946 -2.4688 -2.6497 21 6 8.1710 -3.7911 -2.8027 22 6 7.1059 -4.5572 -3.0993 23 8 6.0150 -3.7742 -3.1290 24 6 2.2365 -1.1210 0.7649 25 9 1.4341 -2.0678 1.4104 26 9 3.4367 -0.8055 1.4109 27 1 -0.3632 -0.9261 0.4454 28 1 -0.3633 0.8488 0.5793 29 1 -0.3633 0.0773 -1.0248 30 1 3.8229 -3.5189 -5.3948 31 1 8.2843 -1.5958 -2.4120 32 1 9.1943 -4.1221 -2.7039 33 1 7.1245 -5.6214 -3.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:51 Heat of formation + Delta-G solvation = -148.382160 kcal Electronic energy + Delta-G solvation = -22978.544201 eV Core-core repulsion = 19028.940151 eV Total energy + Delta-G solvation = -3949.604050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.91253 -48.58426 -43.06473 -41.26011 -38.24269 -36.89981 -34.97790 -33.59390 -31.78179 -29.91517 -28.44272 -26.14939 -24.53981 -22.56278 -22.24017 -21.33915 -21.23144 -19.49820 -18.83406 -18.35846 -18.28112 -17.49487 -17.18699 -17.01658 -16.72902 -16.26403 -15.87346 -15.23933 -15.18627 -14.82663 -14.68244 -14.48258 -14.03142 -13.90283 -13.58318 -13.49554 -13.37757 -13.11672 -13.01673 -12.85063 -12.72235 -12.23097 -11.93073 -11.76848 -11.60495 -11.15218 -10.99801 -10.82178 -10.51584 -9.12035 -8.25198 -6.56679 0.93101 1.12626 1.36677 1.38304 1.50043 1.68576 1.82381 2.01248 2.20755 2.32317 2.57733 2.97550 3.02348 3.35095 3.40295 3.87462 4.07165 4.28267 4.36916 4.40624 4.42438 4.47447 4.62039 4.84744 4.97391 5.10744 5.19576 5.27082 5.40429 5.54018 5.73922 5.80846 5.90037 6.47421 6.67666 6.97561 7.21038 8.72821 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.006385 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.379381 B = 4384.119476 C = 5470.378306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 H 0.141 0.859 4 C -0.178 4.178 5 H 0.170 0.830 6 C 0.481 3.519 7 O -0.538 6.538 8 O -0.344 6.344 9 C 0.276 3.724 10 H 0.060 0.940 11 C -0.576 4.576 12 H 0.063 0.937 13 C 0.040 3.960 14 N -0.843 5.843 15 Si 0.960 3.040 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.270 1.270 19 C 0.036 3.964 20 C -0.265 4.265 21 C -0.218 4.218 22 C -0.083 4.083 23 O -0.141 6.141 24 C 0.217 3.783 25 F -0.146 7.146 26 F -0.168 7.168 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.270 0.730 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -0.070 6.932 8.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.103 4.103 3 H 0.159 0.841 4 C -0.198 4.198 5 H 0.187 0.813 6 C 0.325 3.675 7 O -0.430 6.430 8 O -0.259 6.259 9 C 0.224 3.776 10 H 0.077 0.923 11 C -0.612 4.612 12 H 0.081 0.919 13 C -0.169 4.169 14 N -0.476 5.476 15 Si 0.784 3.216 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.195 1.195 19 C -0.017 4.017 20 C -0.284 4.284 21 C -0.237 4.237 22 C -0.151 4.151 23 O -0.034 6.034 24 C 0.180 3.820 25 F -0.127 7.127 26 F -0.149 7.149 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.164 0.836 32 H 0.188 0.812 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.647 -0.086 6.861 8.886 hybrid contribution 0.645 0.086 -0.852 1.072 sum -5.002 0.000 6.010 7.819 Atomic orbital electron populations 1.21554 0.86674 1.05028 1.04925 1.24013 0.99709 0.94805 0.91771 0.84078 1.23505 0.96486 1.07179 0.92615 0.81271 1.22454 0.85476 0.83439 0.76133 1.90531 1.68367 1.23270 1.60848 1.86698 1.38215 1.41627 1.59399 1.18718 0.78610 0.87447 0.92798 0.92254 1.21431 1.44617 0.99472 0.95685 0.91859 1.25852 0.93742 0.94689 1.02571 1.70164 1.35996 1.05365 1.36028 0.85486 0.78441 0.78771 0.78946 1.19370 1.19904 1.19472 1.22696 0.94756 0.84086 1.00125 1.21596 0.93525 0.99724 1.13538 1.21904 1.00875 0.92216 1.08727 1.24762 0.84894 0.98483 1.06951 1.84406 1.35090 1.17373 1.66552 1.20067 0.81379 0.95136 0.85371 1.93024 1.71400 1.65468 1.82773 1.93032 1.45909 1.92635 1.83291 0.90436 0.88157 0.89227 0.92052 0.83585 0.81151 0.75869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 10.16 71.98 0.73 -1.33 16 2 C -0.08 -2.13 5.90 -10.79 -0.06 -2.20 16 3 H 0.14 3.71 7.67 -2.39 -0.02 3.69 16 4 C -0.18 -5.97 6.01 -11.54 -0.07 -6.04 16 5 H 0.17 5.08 8.14 -2.39 -0.02 5.06 16 6 C 0.48 21.95 7.34 71.24 0.52 22.48 16 7 O -0.54 -26.29 15.48 21.97 0.34 -25.95 16 8 O -0.34 -18.06 9.27 -49.43 -0.46 -18.52 16 9 C 0.28 14.91 2.58 29.10 0.08 14.99 16 10 H 0.06 3.21 7.15 -2.38 -0.02 3.19 16 11 C -0.58 -32.37 8.91 25.60 0.23 -32.14 16 12 H 0.06 3.57 7.81 -2.92 -0.02 3.55 16 13 C 0.04 2.17 5.25 84.66 0.44 2.61 16 14 N -0.84 -46.19 10.44 21.45 0.22 -45.97 16 15 Si 0.96 42.20 29.54 68.60 2.03 44.22 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 C 0.04 1.85 5.68 24.83 0.14 1.99 16 20 C -0.26 -11.73 10.80 22.19 0.24 -11.49 16 21 C -0.22 -8.21 10.91 22.19 0.24 -7.97 16 22 C -0.08 -3.24 12.09 66.97 0.81 -2.43 16 23 O -0.14 -7.10 8.61 -1.37 -0.01 -7.11 16 24 C 0.22 6.61 5.14 30.59 0.16 6.77 16 25 F -0.15 -4.06 16.50 44.97 0.74 -3.32 16 26 F -0.17 -5.97 17.13 44.97 0.77 -5.20 16 27 H 0.08 1.21 7.10 -2.39 -0.02 1.19 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.15 5.87 8.06 -2.91 -0.02 5.85 16 32 H 0.17 4.92 8.06 -2.91 -0.02 4.90 16 33 H 0.22 6.48 8.06 -2.91 -0.02 6.46 16 Total: -1.00 -68.03 305.68 8.24 -59.79 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.15 Total: 16.83 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 3.46 Total: -14.77 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.22 Total: -45.97 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.13 Total: -51.59 kcal Atomic # 9 Polarization: -10.03 SS G_CDS: 1.51 Total: -8.52 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -68.03 8.24 -59.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.593 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds