Wall clock time and date at job start Tue Mar 31 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48501 * 109.47147 * 240.00008 * 3 2 1 5 5 H 1.48498 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46804 * 120.00210 * 3 2 1 7 7 C 1.39932 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99540 * 196.79851 * 7 2 1 9 9 C 1.41407 * 120.00097 * 16.79296 * 7 2 1 10 10 C 1.40774 * 120.20863 * 25.17467 * 9 7 2 11 11 C 1.37649 * 119.88865 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.32417 * 359.73971 * 11 10 9 13 13 C 1.39268 * 120.42346 * 0.51702 * 12 11 10 14 14 N 1.39855 * 119.94599 * 179.76072 * 13 12 11 15 15 C 1.34770 * 120.00077 * 325.51484 * 14 13 12 16 16 O 1.21544 * 120.00138 * 354.89711 * 15 14 13 17 17 C 1.47957 * 120.00117 * 174.89469 * 15 14 13 18 18 N 1.32820 * 119.75113 * 359.97438 * 17 15 14 19 19 C 1.31445 * 121.66465 * 179.70444 * 18 17 15 20 20 C 1.38678 * 120.97612 * 0.58850 * 19 18 17 21 21 C 1.38460 * 119.40155 * 359.44735 * 20 19 18 22 22 C 1.38956 * 118.46592 * 0.25356 * 21 20 19 23 23 F 1.35097 * 120.49926 * 180.02562 * 22 21 20 24 24 C 1.38305 * 120.10252 * 359.48569 * 13 12 11 25 25 H 0.97006 * 120.00116 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.05685 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.83742 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.78678 * 180.25551 * 12 11 10 29 29 H 0.96998 * 120.00011 * 145.51649 * 14 13 12 30 30 H 1.08000 * 119.50805 * 180.31386 * 19 18 17 31 31 H 1.07996 * 120.29377 * 179.73018 * 20 19 18 32 32 H 1.08002 * 120.76044 * 180.27572 * 21 20 19 33 33 H 1.07998 * 120.15904 * 180.22958 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0078 -1.2119 -0.0005 8 1 3.0533 -1.2319 0.2698 9 6 1.3460 -2.4102 -0.3549 10 6 0.2108 -2.3731 -1.1866 11 6 -0.4286 -3.5436 -1.5269 12 6 0.0425 -4.7595 -1.0594 13 6 1.1612 -4.8111 -0.2315 14 7 1.6253 -6.0437 0.2389 15 6 0.7510 -7.0293 0.5225 16 8 -0.4443 -6.8184 0.4586 17 6 1.2461 -8.3682 0.9115 18 7 2.5533 -8.5935 0.9791 19 6 3.0343 -9.7666 1.3261 20 6 2.1889 -10.8245 1.6251 21 6 0.8184 -10.6366 1.5677 22 6 0.3360 -9.3852 1.2041 23 9 -0.9936 -9.1563 1.1354 24 6 1.8173 -3.6459 0.1215 25 1 -0.4850 0.8401 0.0004 26 1 -0.1582 -1.4279 -1.5563 27 1 -1.2997 -3.5142 -2.1647 28 1 -0.4635 -5.6729 -1.3352 29 1 2.5765 -6.1893 0.3610 30 1 4.1036 -9.9099 1.3747 31 1 2.5961 -11.7849 1.9047 32 1 0.1399 -11.4441 1.8005 33 1 2.6871 -3.6852 0.7605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272973085.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:45 Heat of formation + Delta-G solvation = -18.123545 kcal Electronic energy + Delta-G solvation = -20931.251818 eV Core-core repulsion = 17450.358181 eV Total energy + Delta-G solvation = -3480.893637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.03821 -40.60665 -39.19551 -37.12350 -34.47034 -33.28697 -32.67418 -31.30460 -29.81386 -28.23404 -25.29420 -24.97869 -23.75805 -21.78448 -20.92350 -19.94227 -18.15828 -17.80836 -17.54179 -17.10091 -16.09423 -15.66275 -15.47469 -14.98490 -14.82808 -14.34283 -14.30997 -13.86960 -13.51921 -13.43272 -12.95313 -12.89725 -12.63206 -12.21195 -11.66174 -11.20531 -11.13459 -10.88638 -10.55485 -10.35144 -10.29497 -10.08271 -9.60492 -9.47659 -9.25866 -9.19156 -8.93114 -7.44574 -6.91581 -6.69847 -4.33943 0.26532 0.69866 2.52459 2.84699 3.06380 3.09137 3.11423 3.24632 3.30881 3.71254 3.82527 3.95139 3.97270 4.30601 4.47829 4.60574 4.68203 5.02549 5.33627 5.44569 5.52646 5.70845 6.19173 6.31572 6.55838 6.76048 6.95087 7.00907 7.06140 7.27208 7.33405 7.59377 7.69244 7.97883 8.05352 8.14740 8.32576 8.54864 8.69010 8.91548 8.98844 10.23515 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.034117 B = 0.003489 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.508935 B = 8023.915821 C = 8572.855692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.122 3.878 10 C -0.165 4.165 11 C -0.095 4.095 12 C -0.226 4.226 13 C 0.150 3.850 14 N -0.641 5.641 15 C 0.556 3.444 16 O -0.502 6.502 17 C 0.056 3.944 18 N -0.432 5.432 19 C 0.086 3.914 20 C -0.125 4.125 21 C -0.120 4.120 22 C 0.109 3.891 23 F -0.103 7.103 24 C -0.240 4.240 25 H 0.281 0.719 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.410 0.590 30 H 0.171 0.829 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -17.738 2.649 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.119 3.881 10 C -0.185 4.185 11 C -0.114 4.114 12 C -0.247 4.247 13 C 0.058 3.942 14 N -0.285 5.285 15 C 0.340 3.660 16 O -0.376 6.376 17 C -0.084 4.084 18 N -0.143 5.143 19 C -0.074 4.074 20 C -0.145 4.145 21 C -0.146 4.146 22 C 0.086 3.914 23 F -0.081 7.081 24 C -0.261 4.261 25 H 0.092 0.908 26 H 0.138 0.862 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.246 0.754 30 H 0.188 0.812 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.767 -16.714 2.400 17.545 hybrid contribution 0.034 -0.114 0.426 0.442 sum 4.800 -16.828 2.826 17.726 Atomic orbital electron populations 1.69824 1.07543 1.29263 1.35335 1.25889 0.94722 1.01237 0.92284 0.86360 0.80094 0.80279 0.79906 1.18839 1.20389 1.19075 1.19485 0.97700 0.90994 1.41325 0.90461 1.17360 0.91054 0.91278 0.88371 1.21389 0.99114 0.96886 1.01108 1.20579 0.98438 0.92726 0.99647 1.20309 1.00885 0.97375 1.06094 1.17446 0.97257 0.82677 0.96800 1.43231 1.10285 1.11890 1.63061 1.17660 0.86364 0.83044 0.78909 1.90885 1.14744 1.81134 1.50831 1.21610 0.89283 0.95306 1.02193 1.67686 1.12548 1.23902 1.10125 1.22936 1.01219 0.87595 0.95653 1.22292 0.92780 1.01221 0.98213 1.21723 0.97124 0.95910 0.99850 1.18681 0.79180 0.94179 0.99337 1.91642 1.28892 1.94863 1.92743 1.20719 1.05518 0.91301 1.08605 0.90829 0.86231 0.88939 0.88178 0.75391 0.81195 0.83227 0.82825 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.90 10.94 55.55 0.61 -20.29 16 2 C 0.08 1.94 5.16 -17.35 -0.09 1.85 16 3 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.47 -12.42 9.05 -37.74 -0.34 -12.76 16 8 H 0.08 1.96 7.90 -52.48 -0.41 1.55 16 9 C 0.12 3.31 5.57 -106.85 -0.59 2.72 16 10 C -0.17 -4.42 8.69 -38.84 -0.34 -4.76 16 11 C -0.09 -2.37 10.02 -39.69 -0.40 -2.76 16 12 C -0.23 -5.57 8.66 -39.09 -0.34 -5.91 16 13 C 0.15 3.55 6.24 -83.79 -0.52 3.03 16 14 N -0.64 -12.68 5.32 -10.73 -0.06 -12.74 16 15 C 0.56 10.91 7.53 -12.28 -0.09 10.82 16 16 O -0.50 -11.57 13.06 5.33 0.07 -11.50 16 17 C 0.06 0.85 6.75 -82.96 -0.56 0.29 16 18 N -0.43 -5.47 9.55 -9.76 -0.09 -5.56 16 19 C 0.09 0.72 11.18 -17.55 -0.20 0.53 16 20 C -0.13 -0.83 10.11 -39.34 -0.40 -1.23 16 21 C -0.12 -1.04 10.16 -39.23 -0.40 -1.44 16 22 C 0.11 1.47 7.32 -38.82 -0.28 1.19 16 23 F -0.10 -1.64 15.55 2.25 0.04 -1.61 16 24 C -0.24 -5.98 9.70 -38.68 -0.38 -6.36 16 25 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 26 H 0.12 3.26 6.17 -52.49 -0.32 2.93 16 27 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 28 H 0.10 2.44 6.47 -52.49 -0.34 2.10 16 29 H 0.41 6.94 8.15 -40.82 -0.33 6.61 16 30 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 32 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -32.02 298.73 -7.55 -39.57 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -2.66 Total: 8.69 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -4.93 Total: -14.80 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.46 Total: -38.60 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.02 -7.55 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272973085.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.450 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds