Wall clock time and date at job start Tue Mar 31 2020 05:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48501 * 109.47147 * 240.00008 * 3 2 1 5 5 H 1.48498 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46804 * 120.00210 * 3 2 1 7 7 C 1.39932 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99540 * 196.79851 * 7 2 1 9 9 C 1.41407 * 120.00097 * 16.79296 * 7 2 1 10 10 C 1.40774 * 120.20863 * 25.17467 * 9 7 2 11 11 C 1.37649 * 119.88865 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.32417 * 359.73971 * 11 10 9 13 13 C 1.39268 * 120.42346 * 0.51702 * 12 11 10 14 14 N 1.39855 * 119.94599 * 179.76072 * 13 12 11 15 15 C 1.34770 * 120.00077 * 325.51484 * 14 13 12 16 16 O 1.21544 * 120.00138 * 354.89711 * 15 14 13 17 17 C 1.47957 * 120.00117 * 174.89469 * 15 14 13 18 18 N 1.32820 * 119.75113 * 359.97438 * 17 15 14 19 19 C 1.31445 * 121.66465 * 179.70444 * 18 17 15 20 20 C 1.38678 * 120.97612 * 0.58850 * 19 18 17 21 21 C 1.38460 * 119.40155 * 359.44735 * 20 19 18 22 22 C 1.38956 * 118.46592 * 0.25356 * 21 20 19 23 23 F 1.35097 * 120.49926 * 180.02562 * 22 21 20 24 24 C 1.38305 * 120.10252 * 359.48569 * 13 12 11 25 25 H 0.97006 * 120.00116 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.05685 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.83742 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.78678 * 180.25551 * 12 11 10 29 29 H 0.96998 * 120.00011 * 145.51649 * 14 13 12 30 30 H 1.08000 * 119.50805 * 180.31386 * 19 18 17 31 31 H 1.07996 * 120.29377 * 179.73018 * 20 19 18 32 32 H 1.08002 * 120.76044 * 180.27572 * 21 20 19 33 33 H 1.07998 * 120.15904 * 180.22958 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0078 -1.2119 -0.0005 8 1 3.0533 -1.2319 0.2698 9 6 1.3460 -2.4102 -0.3549 10 6 0.2108 -2.3731 -1.1866 11 6 -0.4286 -3.5436 -1.5269 12 6 0.0425 -4.7595 -1.0594 13 6 1.1612 -4.8111 -0.2315 14 7 1.6253 -6.0437 0.2389 15 6 0.7510 -7.0293 0.5225 16 8 -0.4443 -6.8184 0.4586 17 6 1.2461 -8.3682 0.9115 18 7 2.5533 -8.5935 0.9791 19 6 3.0343 -9.7666 1.3261 20 6 2.1889 -10.8245 1.6251 21 6 0.8184 -10.6366 1.5677 22 6 0.3360 -9.3852 1.2041 23 9 -0.9936 -9.1563 1.1354 24 6 1.8173 -3.6459 0.1215 25 1 -0.4850 0.8401 0.0004 26 1 -0.1582 -1.4279 -1.5563 27 1 -1.2997 -3.5142 -2.1647 28 1 -0.4635 -5.6729 -1.3352 29 1 2.5765 -6.1893 0.3610 30 1 4.1036 -9.9099 1.3747 31 1 2.5961 -11.7849 1.9047 32 1 0.1399 -11.4441 1.8005 33 1 2.6871 -3.6852 0.7605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272973085.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:44 Heat of formation + Delta-G solvation = -38.957787 kcal Electronic energy + Delta-G solvation = -20932.155258 eV Core-core repulsion = 17450.358181 eV Total energy + Delta-G solvation = -3481.797077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.09832 -41.75813 -40.53618 -38.96478 -36.25435 -34.98331 -33.66190 -32.24727 -31.80779 -30.00926 -27.23092 -26.11702 -24.60790 -23.31739 -22.82213 -21.60677 -19.58477 -19.25586 -18.63959 -18.17974 -17.40166 -17.20523 -16.75464 -16.68943 -16.45714 -15.95724 -15.44606 -15.01416 -14.92938 -14.65038 -14.38355 -14.19201 -14.08988 -13.59851 -13.49161 -13.02075 -12.94358 -12.71828 -12.34505 -12.00201 -11.50391 -11.40904 -11.13424 -11.03684 -10.89578 -10.64984 -10.17533 -9.46059 -8.83066 -8.62005 -6.38014 -0.66129 -0.03545 0.85001 0.94573 1.40226 1.51057 1.53992 1.71406 1.94003 2.22581 2.60155 2.75070 2.86309 3.02378 3.57867 3.62009 3.68960 3.87422 4.32058 4.39774 4.55404 4.61275 4.79251 4.90309 4.96050 4.97955 5.07067 5.16036 5.30468 5.48275 5.68065 5.78000 6.03577 6.06052 6.20330 6.43200 6.62338 6.65888 6.90176 6.92691 7.10260 8.33767 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.034117 B = 0.003489 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.508935 B = 8023.915821 C = 8572.855692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.097 3.903 10 C -0.191 4.191 11 C -0.095 4.095 12 C -0.240 4.240 13 C 0.158 3.842 14 N -0.638 5.638 15 C 0.553 3.447 16 O -0.548 6.548 17 C 0.020 3.980 18 N -0.453 5.453 19 C 0.090 3.910 20 C -0.089 4.089 21 C -0.110 4.110 22 C 0.085 3.915 23 F -0.129 7.129 24 C -0.253 4.253 25 H 0.289 0.711 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.423 0.577 30 H 0.213 0.787 31 H 0.206 0.794 32 H 0.188 0.812 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.661 -20.060 3.708 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.101 0.899 9 C 0.094 3.906 10 C -0.211 4.211 11 C -0.114 4.114 12 C -0.262 4.262 13 C 0.065 3.935 14 N -0.283 5.283 15 C 0.340 3.660 16 O -0.425 6.425 17 C -0.117 4.117 18 N -0.164 5.164 19 C -0.072 4.072 20 C -0.108 4.108 21 C -0.136 4.136 22 C 0.062 3.938 23 F -0.107 7.107 24 C -0.274 4.274 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.117 0.883 29 H 0.261 0.739 30 H 0.229 0.771 31 H 0.223 0.777 32 H 0.205 0.795 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.091 -19.065 3.462 20.633 hybrid contribution -0.603 0.350 0.168 0.717 sum 6.488 -18.715 3.630 20.137 Atomic orbital electron populations 1.69893 1.09221 1.30779 1.35297 1.26846 0.95491 1.04772 0.91023 0.85167 0.78651 0.75161 0.80188 1.18205 1.19363 1.18218 1.19814 0.98198 0.91940 1.42591 0.89915 1.17744 0.91561 0.92494 0.88784 1.21340 1.00229 0.96871 1.02672 1.20801 0.98763 0.92396 0.99469 1.20422 1.01643 0.97194 1.06897 1.17512 0.96366 0.84100 0.95515 1.43159 1.11169 1.10822 1.63109 1.18414 0.85714 0.84517 0.77353 1.90836 1.16624 1.82360 1.52696 1.20881 0.91013 0.93356 1.06461 1.67607 1.11043 1.26525 1.11252 1.23803 1.03506 0.86442 0.93429 1.22944 0.91308 1.02655 0.93882 1.22185 0.98867 0.94354 0.98223 1.19137 0.77989 0.95889 1.00820 1.91572 1.30682 1.95235 1.93203 1.20872 1.06266 0.91187 1.09110 0.90025 0.87416 0.87027 0.88301 0.73855 0.77071 0.77665 0.79482 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.51 10.94 21.82 0.24 -44.27 16 2 C 0.03 1.73 5.16 85.25 0.44 2.17 16 3 Si 0.99 38.44 29.59 68.60 2.03 40.47 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 7 C -0.50 -27.16 9.05 23.46 0.21 -26.95 16 8 H 0.08 4.27 7.90 -2.91 -0.02 4.25 16 9 C 0.10 5.47 5.57 -21.31 -0.12 5.35 16 10 C -0.19 -10.71 8.69 22.75 0.20 -10.51 16 11 C -0.10 -4.97 10.02 22.20 0.22 -4.75 16 12 C -0.24 -12.42 8.66 22.59 0.20 -12.22 16 13 C 0.16 7.79 6.24 38.12 0.24 8.03 16 14 N -0.64 -26.11 5.32 -306.16 -1.63 -27.73 16 15 C 0.55 22.62 7.53 86.82 0.65 23.28 16 16 O -0.55 -26.75 13.06 -3.85 -0.05 -26.80 16 17 C 0.02 0.60 6.75 41.89 0.28 0.88 16 18 N -0.45 -10.67 9.55 -184.80 -1.76 -12.44 16 19 C 0.09 1.09 11.18 84.86 0.95 2.04 16 20 C -0.09 -0.65 10.11 22.43 0.23 -0.42 16 21 C -0.11 -1.50 10.16 22.49 0.23 -1.27 16 22 C 0.08 2.23 7.32 22.76 0.17 2.40 16 23 F -0.13 -4.24 15.55 44.97 0.70 -3.54 16 24 C -0.25 -13.06 9.70 22.86 0.22 -12.84 16 25 H 0.29 14.07 8.30 -92.70 -0.77 13.30 16 26 H 0.11 6.18 6.17 -2.91 -0.02 6.16 16 27 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 28 H 0.10 5.08 6.47 -2.91 -0.02 5.06 16 29 H 0.42 14.63 8.15 -92.71 -0.76 13.87 16 30 H 0.21 0.75 8.06 -2.91 -0.02 0.72 16 31 H 0.21 -0.64 8.06 -2.91 -0.02 -0.66 16 32 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -76.10 298.73 4.06 -72.04 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.42 Total: 27.10 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 4.12 Total: -24.82 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -3.15 Total: -84.44 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.70 Total: -3.54 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -76.10 4.06 -72.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272973085.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.077 kcal (2) G-P(sol) polarization free energy of solvation -76.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds