Wall clock time and date at job start Tue Mar 31 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86797 * 120.00379 * 2 1 4 4 H 1.48501 * 109.47173 * 240.00294 * 3 2 1 5 5 H 1.48499 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47250 * 120.00001 * 3 2 1 7 7 C 1.40289 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99927 * 189.06740 * 7 2 1 9 9 C 1.40874 * 119.99823 * 9.06544 * 7 2 1 10 10 C 1.40705 * 120.32980 * 33.33533 * 9 7 2 11 11 C 1.37590 * 119.88386 * 180.29364 * 10 9 7 12 12 C 1.38842 * 120.57349 * 359.70264 * 11 10 9 13 13 C 1.38208 * 120.68188 * 0.02562 * 12 11 10 14 14 C 1.39255 * 120.08434 * 359.97438 * 13 12 11 15 15 C 1.47382 * 120.28246 * 179.97438 * 14 13 12 16 16 O 1.21620 * 119.99905 * 185.56977 * 15 14 13 17 17 N 1.34777 * 120.00072 * 5.56375 * 15 14 13 18 18 C 1.39374 * 120.00052 * 185.03042 * 17 15 14 19 19 C 1.39063 * 119.67154 * 174.69487 * 18 17 15 20 20 C 1.38336 * 119.12589 * 180.02562 * 19 18 17 21 21 C 1.39025 * 118.48042 * 0.25429 * 20 19 18 22 22 F 1.35097 * 120.36800 * 179.72698 * 21 20 19 23 23 C 1.38289 * 119.26468 * 359.52407 * 21 20 19 24 24 N 1.31952 * 120.81209 * 0.48602 * 23 21 20 25 25 H 0.96999 * 119.99499 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.06669 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.71837 * 179.72012 * 11 10 9 28 28 H 1.07999 * 119.66212 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.95624 * 179.97438 * 13 12 11 30 30 H 0.97009 * 119.99815 * 5.04072 * 17 15 14 31 31 H 1.08002 * 120.43538 * 0.02723 * 19 18 17 32 32 H 1.08003 * 120.76600 * 179.97438 * 20 19 18 33 33 H 1.07995 * 119.59309 * 180.23239 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 3.0941 1.6963 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0941 1.6963 1.2125 7 6 2.0077 -1.2150 -0.0005 8 1 3.0775 -1.2209 0.1468 9 6 1.3164 -2.4272 -0.1933 10 6 0.1857 -2.4752 -1.0293 11 6 -0.4862 -3.6628 -1.2063 12 6 -0.0548 -4.8196 -0.5712 13 6 1.0563 -4.8006 0.2506 14 6 1.7572 -3.6138 0.4494 15 6 2.9423 -3.5884 1.3253 16 8 3.4903 -2.5321 1.5763 17 7 3.4186 -4.7357 1.8481 18 6 4.4732 -4.7016 2.7586 19 6 4.8865 -5.8762 3.3777 20 6 5.9341 -5.8293 4.2800 21 6 6.5325 -4.6012 4.5377 22 9 7.5549 -4.5106 5.4161 23 6 6.0724 -3.4741 3.8818 24 7 5.0708 -3.5515 3.0263 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1570 -1.5805 -1.5278 27 1 -1.3565 -3.6956 -1.8449 28 1 -0.5929 -5.7440 -0.7208 29 1 1.3813 -5.7073 0.7391 30 1 3.0274 -5.5852 1.5906 31 1 4.3960 -6.8128 3.1570 32 1 6.2763 -6.7254 4.7763 33 1 6.5359 -2.5180 4.0752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001291777473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:29 Heat of formation + Delta-G solvation = -7.241496 kcal Electronic energy + Delta-G solvation = -21251.319133 eV Core-core repulsion = 17770.897377 eV Total energy + Delta-G solvation = -3480.421756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.79606 -40.40426 -38.62605 -36.80876 -34.38944 -33.63094 -32.38017 -30.41757 -29.83090 -28.79362 -25.58660 -24.17403 -23.37624 -21.96500 -20.94069 -19.67309 -18.19673 -17.49368 -17.19388 -16.88379 -15.86724 -15.69564 -15.29550 -14.55481 -14.49129 -14.29838 -13.99841 -13.68842 -13.51194 -13.15286 -12.89520 -12.75285 -12.44881 -12.29410 -11.66313 -11.15056 -11.11599 -10.76667 -10.60391 -10.22741 -10.12529 -9.90444 -9.79129 -9.43462 -9.30072 -8.31970 -7.92277 -7.66153 -7.44195 -6.87369 -4.47249 1.04580 1.21969 2.28086 2.76483 3.07299 3.13471 3.22649 3.33308 3.69317 3.93918 4.18658 4.20703 4.55270 4.62359 4.74709 4.90622 5.22481 5.54215 5.55362 5.71656 5.87721 5.90433 6.00810 6.21463 6.48023 6.49134 6.86537 6.98672 7.03843 7.15098 7.36613 7.51916 7.61796 7.85073 7.93670 8.10269 8.33269 8.57471 8.73676 8.80584 9.23509 10.06849 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.005162 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.138748 B = 5422.944321 C = 7003.114121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.107 0.893 9 C 0.146 3.854 10 C -0.145 4.145 11 C -0.095 4.095 12 C -0.244 4.244 13 C -0.058 4.058 14 C -0.266 4.266 15 C 0.548 3.452 16 O -0.467 6.467 17 N -0.667 5.667 18 C 0.374 3.626 19 C -0.197 4.197 20 C -0.078 4.078 21 C -0.011 4.011 22 F -0.140 7.140 23 C 0.116 3.884 24 N -0.449 5.449 25 H 0.284 0.716 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.411 0.589 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 -8.863 4.404 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.149 4.149 3 Si 0.742 3.258 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.440 4.440 8 H 0.125 0.875 9 C 0.141 3.859 10 C -0.164 4.164 11 C -0.114 4.114 12 C -0.263 4.263 13 C -0.077 4.077 14 C -0.271 4.271 15 C 0.342 3.658 16 O -0.338 6.338 17 N -0.314 5.314 18 C 0.141 3.859 19 C -0.221 4.221 20 C -0.105 4.105 21 C -0.035 4.035 22 F -0.119 7.119 23 C -0.045 4.045 24 N -0.163 5.163 25 H 0.095 0.905 26 H 0.138 0.862 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.248 0.752 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.996 -7.098 4.099 10.155 hybrid contribution 0.388 -0.641 0.583 0.950 sum 6.384 -7.739 4.682 11.071 Atomic orbital electron populations 1.69703 1.07832 1.29919 1.33812 1.26160 0.94814 1.01960 0.91991 0.86179 0.79997 0.79115 0.80498 1.18664 1.20400 1.18397 1.20237 0.97477 0.89483 1.36839 0.87484 1.17442 0.90162 0.91163 0.87113 1.21391 0.98145 0.96486 1.00348 1.20819 0.98218 0.93531 0.98871 1.20280 1.01363 0.97404 1.07257 1.20628 0.95253 0.94952 0.96845 1.19300 1.01806 0.96453 1.09587 1.18740 0.84561 0.82260 0.80205 1.90796 1.57551 1.28482 1.56925 1.44144 1.32327 1.12091 1.42800 1.18746 0.88491 0.89318 0.89346 1.21382 1.00867 0.98655 1.01197 1.21289 0.95050 0.97004 0.97112 1.18675 0.92001 0.96103 0.96714 1.91467 1.56734 1.96970 1.66726 1.22893 0.92450 0.97790 0.91345 1.67945 1.07705 1.25507 1.15139 0.90480 0.86246 0.88966 0.88981 0.89327 0.75198 0.84009 0.83786 0.81726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.99 11.07 55.57 0.62 -19.37 16 2 C 0.07 1.77 5.26 -17.29 -0.09 1.67 16 3 Si 0.92 19.43 29.57 -169.99 -5.03 14.41 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.41 -11.10 7.73 -37.81 -0.29 -11.39 16 8 H 0.11 2.99 5.84 -52.49 -0.31 2.68 16 9 C 0.15 3.80 5.52 -106.54 -0.59 3.21 16 10 C -0.14 -3.56 8.62 -38.89 -0.34 -3.90 16 11 C -0.10 -2.08 10.01 -39.59 -0.40 -2.47 16 12 C -0.24 -4.95 10.03 -39.37 -0.39 -5.34 16 13 C -0.06 -1.17 9.50 -39.21 -0.37 -1.55 16 14 C -0.27 -6.28 5.92 -104.37 -0.62 -6.90 16 15 C 0.55 12.46 7.68 -12.54 -0.10 12.37 16 16 O -0.47 -12.16 11.82 5.26 0.06 -12.10 16 17 N -0.67 -11.72 5.32 -12.41 -0.07 -11.78 16 18 C 0.37 6.26 7.42 -154.74 -1.15 5.11 16 19 C -0.20 -2.41 9.94 -39.24 -0.39 -2.80 16 20 C -0.08 -0.89 10.15 -39.25 -0.40 -1.29 16 21 C -0.01 -0.15 7.34 -39.27 -0.29 -0.44 16 22 F -0.14 -1.81 17.28 2.25 0.04 -1.77 16 23 C 0.12 1.77 11.16 -17.48 -0.20 1.57 16 24 N -0.45 -8.48 7.88 -12.32 -0.10 -8.57 16 25 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 26 H 0.12 3.01 6.52 -52.49 -0.34 2.67 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 29 H 0.09 1.42 6.47 -52.49 -0.34 1.08 16 30 H 0.41 5.68 6.80 -40.82 -0.28 5.40 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.17 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 294.79 15.07 4.44 4.44 Total: -1.00 -30.37 294.79 -8.15 -38.52 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -2.51 Total: 8.38 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -5.61 Total: -12.15 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.45 Total: -39.73 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.06 Total: -12.10 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.37 -8.15 -38.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001291777473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.278 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds