Wall clock time and date at job start Tue Mar 31 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86797 * 120.00379 * 2 1 4 4 H 1.48501 * 109.47173 * 240.00294 * 3 2 1 5 5 H 1.48499 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47250 * 120.00001 * 3 2 1 7 7 C 1.40289 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99927 * 189.06740 * 7 2 1 9 9 C 1.40874 * 119.99823 * 9.06544 * 7 2 1 10 10 C 1.40705 * 120.32980 * 33.33533 * 9 7 2 11 11 C 1.37590 * 119.88386 * 180.29364 * 10 9 7 12 12 C 1.38842 * 120.57349 * 359.70264 * 11 10 9 13 13 C 1.38208 * 120.68188 * 0.02562 * 12 11 10 14 14 C 1.39255 * 120.08434 * 359.97438 * 13 12 11 15 15 C 1.47382 * 120.28246 * 179.97438 * 14 13 12 16 16 O 1.21620 * 119.99905 * 185.56977 * 15 14 13 17 17 N 1.34777 * 120.00072 * 5.56375 * 15 14 13 18 18 C 1.39374 * 120.00052 * 185.03042 * 17 15 14 19 19 C 1.39063 * 119.67154 * 174.69487 * 18 17 15 20 20 C 1.38336 * 119.12589 * 180.02562 * 19 18 17 21 21 C 1.39025 * 118.48042 * 0.25429 * 20 19 18 22 22 F 1.35097 * 120.36800 * 179.72698 * 21 20 19 23 23 C 1.38289 * 119.26468 * 359.52407 * 21 20 19 24 24 N 1.31952 * 120.81209 * 0.48602 * 23 21 20 25 25 H 0.96999 * 119.99499 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.06669 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.71837 * 179.72012 * 11 10 9 28 28 H 1.07999 * 119.66212 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.95624 * 179.97438 * 13 12 11 30 30 H 0.97009 * 119.99815 * 5.04072 * 17 15 14 31 31 H 1.08002 * 120.43538 * 0.02723 * 19 18 17 32 32 H 1.08003 * 120.76600 * 179.97438 * 20 19 18 33 33 H 1.07995 * 119.59309 * 180.23239 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 3.0941 1.6963 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0941 1.6963 1.2125 7 6 2.0077 -1.2150 -0.0005 8 1 3.0775 -1.2209 0.1468 9 6 1.3164 -2.4272 -0.1933 10 6 0.1857 -2.4752 -1.0293 11 6 -0.4862 -3.6628 -1.2063 12 6 -0.0548 -4.8196 -0.5712 13 6 1.0563 -4.8006 0.2506 14 6 1.7572 -3.6138 0.4494 15 6 2.9423 -3.5884 1.3253 16 8 3.4903 -2.5321 1.5763 17 7 3.4186 -4.7357 1.8481 18 6 4.4732 -4.7016 2.7586 19 6 4.8865 -5.8762 3.3777 20 6 5.9341 -5.8293 4.2800 21 6 6.5325 -4.6012 4.5377 22 9 7.5549 -4.5106 5.4161 23 6 6.0724 -3.4741 3.8818 24 7 5.0708 -3.5515 3.0263 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1570 -1.5805 -1.5278 27 1 -1.3565 -3.6956 -1.8449 28 1 -0.5929 -5.7440 -0.7208 29 1 1.3813 -5.7073 0.7391 30 1 3.0274 -5.5852 1.5906 31 1 4.3960 -6.8128 3.1570 32 1 6.2763 -6.7254 4.7763 33 1 6.5359 -2.5180 4.0752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001291777473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:29 Heat of formation + Delta-G solvation = -25.127911 kcal Electronic energy + Delta-G solvation = -21252.094746 eV Core-core repulsion = 17770.897377 eV Total energy + Delta-G solvation = -3481.197369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.86079 -41.70974 -40.17351 -38.49133 -35.99371 -35.35033 -33.46676 -32.03545 -31.57236 -30.17019 -27.37716 -25.43207 -24.67509 -23.47034 -22.63814 -21.23132 -19.71834 -18.82163 -18.53660 -18.24615 -17.30925 -17.06914 -16.78659 -16.02477 -15.91415 -15.90471 -15.40155 -15.01520 -14.78188 -14.50683 -14.41460 -14.31600 -13.97836 -13.51187 -13.43598 -12.87101 -12.85319 -12.51767 -12.31455 -11.93051 -11.57425 -11.49692 -11.15780 -10.94584 -10.76732 -9.91872 -9.47070 -9.25252 -9.09416 -8.69871 -6.38449 -0.11366 0.19004 0.56503 1.02305 1.32138 1.43230 1.50587 2.02984 2.19495 2.24994 2.71185 2.86720 3.12230 3.43904 3.72511 3.80467 3.90651 4.07113 4.33846 4.38331 4.59522 4.62989 4.79518 4.89415 4.93251 5.09574 5.22883 5.32608 5.36515 5.60620 5.77172 5.82649 6.02649 6.10958 6.30047 6.37378 6.69790 6.85791 6.94500 7.11460 7.61915 8.26484 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.005162 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.138748 B = 5422.944321 C = 7003.114121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.034 3.966 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.258 1.258 6 H -0.276 1.276 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.115 3.885 10 C -0.177 4.177 11 C -0.091 4.091 12 C -0.234 4.234 13 C -0.053 4.053 14 C -0.282 4.282 15 C 0.547 3.453 16 O -0.513 6.513 17 N -0.654 5.654 18 C 0.338 3.662 19 C -0.168 4.168 20 C -0.066 4.066 21 C 0.000 4.000 22 F -0.136 7.136 23 C 0.091 3.909 24 N -0.504 5.504 25 H 0.290 0.710 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.429 0.571 31 H 0.188 0.812 32 H 0.190 0.810 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -12.684 5.315 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.181 4.181 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.182 1.182 6 H -0.201 1.201 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.112 3.888 10 C -0.196 4.196 11 C -0.110 4.110 12 C -0.253 4.253 13 C -0.071 4.071 14 C -0.287 4.287 15 C 0.340 3.660 16 O -0.387 6.387 17 N -0.303 5.303 18 C 0.106 3.894 19 C -0.191 4.191 20 C -0.092 4.092 21 C -0.023 4.023 22 F -0.115 7.115 23 C -0.068 4.068 24 N -0.218 5.218 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.138 0.862 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.270 0.730 31 H 0.205 0.795 32 H 0.207 0.793 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.057 -10.974 5.026 13.504 hybrid contribution 0.449 0.236 0.405 0.649 sum 6.506 -10.737 5.431 13.679 Atomic orbital electron populations 1.69726 1.08528 1.30737 1.35475 1.26760 0.95594 1.04244 0.91543 0.85352 0.78948 0.76315 0.79671 1.18173 1.18158 1.20086 1.20154 0.96595 0.91271 1.40436 0.90062 1.17827 0.91104 0.92095 0.87812 1.21316 0.99255 0.97373 1.01663 1.21213 0.98316 0.92971 0.98492 1.20826 1.00875 0.98293 1.05323 1.21106 0.94389 0.95397 0.96204 1.19701 1.02570 0.97092 1.09383 1.18742 0.84231 0.83056 0.79978 1.90777 1.58829 1.30662 1.58408 1.43622 1.32689 1.11160 1.42788 1.19081 0.89058 0.90560 0.90681 1.21767 0.99915 0.98418 0.98979 1.21777 0.93787 0.97508 0.96171 1.18744 0.91487 0.96376 0.95694 1.91484 1.56546 1.97006 1.66453 1.22953 0.92636 0.99167 0.92053 1.67727 1.09322 1.27941 1.16841 0.89924 0.88117 0.86215 0.84642 0.84311 0.73028 0.79473 0.79295 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.78 11.07 21.88 0.24 -43.54 16 2 C 0.03 1.82 5.26 85.37 0.45 2.27 16 3 Si 0.98 42.36 29.57 68.60 2.03 44.39 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.46 -26.35 7.73 23.41 0.18 -26.16 16 8 H 0.08 4.98 5.84 -2.92 -0.02 4.96 16 9 C 0.12 6.30 5.52 -21.11 -0.12 6.18 16 10 C -0.18 -8.98 8.62 22.72 0.20 -8.78 16 11 C -0.09 -3.84 10.01 22.26 0.22 -3.61 16 12 C -0.23 -8.63 10.03 22.41 0.22 -8.41 16 13 C -0.05 -1.97 9.50 22.51 0.21 -1.76 16 14 C -0.28 -13.42 5.92 -19.70 -0.12 -13.54 16 15 C 0.55 25.41 7.68 86.65 0.67 26.07 16 16 O -0.51 -28.39 11.82 -4.10 -0.05 -28.44 16 17 N -0.65 -22.08 5.32 -311.41 -1.66 -23.73 16 18 C 0.34 10.84 7.42 132.94 0.99 11.83 16 19 C -0.17 -3.38 9.94 22.49 0.22 -3.16 16 20 C -0.07 -1.21 10.15 22.48 0.23 -0.98 16 21 C 0.00 0.01 7.34 22.47 0.16 0.17 16 22 F -0.14 -3.19 17.28 44.97 0.78 -2.41 16 23 C 0.09 2.81 11.16 84.69 0.95 3.75 16 24 N -0.50 -19.44 7.88 -192.88 -1.52 -20.96 16 25 H 0.29 14.04 8.29 -92.71 -0.77 13.27 16 26 H 0.10 5.37 6.52 -2.91 -0.02 5.36 16 27 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.14 3.71 6.47 -2.91 -0.02 3.69 16 30 H 0.43 10.38 6.80 -92.70 -0.63 9.75 16 31 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -73.35 294.79 4.84 -68.51 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.55 Total: 22.29 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 4.47 Total: -16.12 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.94 Total: -88.23 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -73.35 4.84 -68.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001291777473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.387 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds