Wall clock time and date at job start Tue Mar 31 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86795 * 119.99901 * 2 1 4 4 H 1.48507 * 109.47363 * 275.18614 * 3 2 1 5 5 H 1.48499 * 109.47128 * 35.18436 * 3 2 1 6 6 H 1.48498 * 109.47046 * 155.18611 * 3 2 1 7 7 C 1.40027 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99805 * 342.95822 * 7 2 1 9 9 C 1.41541 * 120.00378 * 162.96353 * 7 2 1 10 10 C 1.41176 * 121.00093 * 154.42372 * 9 7 2 11 11 C 1.37583 * 119.02256 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.11248 * 0.02562 * 11 10 9 13 13 C 1.32487 * 122.22805 * 359.67627 * 12 11 10 14 14 N 1.39380 * 119.57852 * 180.29565 * 13 12 11 15 15 C 1.34776 * 120.00336 * 3.47722 * 14 13 12 16 16 O 1.21513 * 120.00227 * 4.85873 * 15 14 13 17 17 C 1.48110 * 119.99546 * 184.86071 * 15 14 13 18 18 C 1.39911 * 121.13065 * 359.71827 * 17 15 14 19 19 N 1.31762 * 119.78488 * 179.71228 * 18 17 15 20 20 N 1.28268 * 122.42031 * 0.58481 * 19 18 17 21 21 C 1.32283 * 122.44517 * 359.70222 * 20 19 18 22 22 O 1.35702 * 120.08154 * 180.02562 * 21 20 19 23 23 C 1.39229 * 119.83680 * 359.97438 * 21 20 19 24 24 C 1.38614 * 120.83523 * 0.59423 * 13 12 11 25 25 H 0.96995 * 120.00231 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.48611 * 0.03993 * 10 9 7 27 27 H 1.08008 * 119.44431 * 179.97438 * 11 10 9 28 28 H 0.97010 * 119.99459 * 183.47428 * 14 13 12 29 29 H 1.08002 * 120.10295 * 359.97438 * 18 17 15 30 30 H 0.96696 * 113.99824 * 269.97258 * 22 21 20 31 31 H 1.07997 * 121.11975 * 179.97438 * 23 21 20 32 32 H 1.08006 * 120.60486 * 179.72671 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3793 2.1097 -1.3944 5 1 1.4979 2.6185 0.8067 6 1 3.5894 1.4110 0.5876 7 6 2.0076 -1.2127 -0.0005 8 1 1.5032 -2.1276 0.2732 9 6 3.3764 -1.2395 -0.3597 10 6 4.2329 -2.2565 0.1148 11 6 5.5567 -2.2429 -0.2595 12 7 6.0327 -1.2980 -1.0501 13 6 5.2702 -0.3251 -1.5268 14 7 5.8291 0.6406 -2.3621 15 6 7.1200 0.5422 -2.7367 16 8 7.7720 -0.4329 -2.4195 17 6 7.7438 1.6227 -3.5349 18 6 7.0134 2.7529 -3.9179 19 7 7.5965 3.7010 -4.6231 20 7 8.8233 3.6287 -4.9907 21 6 9.5965 2.6000 -4.6845 22 8 10.8887 2.5735 -5.0982 23 6 9.0816 1.5451 -3.9359 24 6 3.9250 -0.2520 -1.2004 25 1 -0.4850 0.8400 0.0004 26 1 3.8543 -3.0340 0.7619 27 1 6.2181 -3.0175 0.0998 28 1 5.2888 1.3836 -2.6738 29 1 5.9763 2.8499 -3.6327 30 1 11.0166 2.1586 -5.9622 31 1 9.6942 0.6949 -3.6746 32 1 3.3077 0.5452 -1.5876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294624498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:23 Heat of formation + Delta-G solvation = 33.691742 kcal Electronic energy + Delta-G solvation = -21089.011025 eV Core-core repulsion = 17630.284229 eV Total energy + Delta-G solvation = -3458.726796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63342 -39.95458 -38.26513 -37.89916 -34.77548 -34.06630 -33.48473 -31.76089 -31.44670 -29.20713 -26.25249 -25.70789 -24.81289 -22.58046 -22.17535 -20.41140 -19.36227 -18.46802 -18.06053 -17.45765 -16.76066 -16.26207 -15.84390 -15.62631 -15.18892 -14.71763 -14.37265 -14.20494 -14.14011 -13.75478 -13.21786 -13.04676 -12.82411 -12.61912 -11.78058 -11.72578 -11.08407 -10.99359 -10.85430 -10.57353 -10.49093 -10.21977 -10.15057 -9.96743 -9.71080 -9.52024 -8.38974 -8.08569 -7.45707 -7.20525 -4.86920 -0.03226 0.36584 2.11873 2.49217 2.67110 2.83622 2.90831 3.01982 3.08757 3.14128 3.41032 3.75680 3.83275 4.02290 4.29131 4.42959 4.46746 4.61468 5.15096 5.27955 5.41622 5.54149 5.59342 6.09338 6.13934 6.26376 6.42787 6.79646 6.88559 6.94754 7.04627 7.32866 7.52341 7.81467 8.04076 8.18496 8.22321 8.35470 8.51437 9.26671 9.80250 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024090 B = 0.004370 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.027990 B = 6406.184625 C = 7431.551009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.084 3.916 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.430 4.430 8 H 0.097 0.903 9 C 0.126 3.874 10 C -0.269 4.269 11 C 0.129 3.871 12 N -0.560 5.560 13 C 0.366 3.634 14 N -0.651 5.651 15 C 0.547 3.453 16 O -0.454 6.454 17 C -0.105 4.105 18 C 0.057 3.943 19 N -0.212 5.212 20 N -0.247 5.247 21 C 0.257 3.743 22 O -0.470 6.470 23 C -0.077 4.077 24 C -0.319 4.319 25 H 0.290 0.710 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.409 0.591 29 H 0.181 0.819 30 H 0.408 0.592 31 H 0.170 0.830 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.943 4.977 -7.642 14.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.460 4.460 8 H 0.115 0.885 9 C 0.117 3.883 10 C -0.292 4.292 11 C -0.022 4.022 12 N -0.280 5.280 13 C 0.139 3.861 14 N -0.297 5.297 15 C 0.329 3.671 16 O -0.323 6.323 17 C -0.120 4.120 18 C -0.109 4.109 19 N -0.056 5.056 20 N -0.100 5.100 21 C 0.071 3.929 22 O -0.276 6.276 23 C -0.108 4.108 24 C -0.344 4.344 25 H 0.101 0.899 26 H 0.129 0.871 27 H 0.149 0.851 28 H 0.245 0.755 29 H 0.198 0.802 30 H 0.267 0.733 31 H 0.188 0.812 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.168 6.023 -7.865 15.691 hybrid contribution -1.010 -0.429 0.338 1.149 sum 11.158 5.594 -7.527 14.575 Atomic orbital electron populations 1.69631 1.08201 1.30845 1.32843 1.26256 0.94812 1.02099 0.90592 0.86234 0.81375 0.79297 0.78718 1.19591 1.21646 1.16616 1.19564 0.92246 0.96255 1.37924 0.88531 1.17656 0.93065 0.89707 0.87846 1.21892 0.94501 1.04412 1.08432 1.21872 0.93250 0.94391 0.92678 1.67247 1.37416 1.05474 1.17816 1.17859 0.88593 0.88916 0.90690 1.43298 1.11162 1.27008 1.48245 1.17912 0.82398 0.85977 0.80769 1.90901 1.61046 1.29528 1.50803 1.21462 0.95001 0.96569 0.98958 1.24651 1.02218 0.89969 0.94018 1.73066 1.01666 1.22816 1.08040 1.72786 0.99388 1.21372 1.16431 1.20763 0.86203 0.90782 0.95128 1.84817 1.18253 1.83128 1.41377 1.22792 0.94465 0.99096 0.94430 1.21138 0.93639 1.07529 1.12130 0.89940 0.87053 0.85090 0.75529 0.80246 0.73339 0.81233 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.48 13.92 55.55 0.77 -18.70 16 2 C 0.08 2.03 5.45 -17.34 -0.09 1.94 16 3 Si 0.92 18.93 24.41 -169.99 -4.15 14.78 16 4 H -0.27 -5.12 6.69 56.52 0.38 -4.74 16 5 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.24 -5.23 6.64 56.52 0.38 -4.86 16 7 C -0.43 -10.78 9.66 -37.65 -0.36 -11.15 16 8 H 0.10 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.13 2.99 5.24 -106.55 -0.56 2.43 16 10 C -0.27 -5.93 9.90 -38.71 -0.38 -6.31 16 11 C 0.13 2.75 11.15 -17.68 -0.20 2.56 16 12 N -0.56 -12.68 7.86 -12.54 -0.10 -12.78 16 13 C 0.37 7.82 7.41 -154.77 -1.15 6.67 16 14 N -0.65 -10.95 5.34 -12.28 -0.07 -11.02 16 15 C 0.55 8.89 7.75 -12.21 -0.09 8.79 16 16 O -0.45 -9.00 14.76 5.35 0.08 -8.92 16 17 C -0.11 -1.32 5.92 -104.60 -0.62 -1.94 16 18 C 0.06 0.64 10.84 -16.96 -0.18 0.45 16 19 N -0.21 -2.71 11.48 30.79 0.35 -2.35 16 20 N -0.25 -3.18 11.50 30.49 0.35 -2.83 16 21 C 0.26 2.82 7.85 -16.99 -0.13 2.68 16 22 O -0.47 -4.03 13.57 -18.81 -0.26 -4.29 16 23 C -0.08 -0.86 9.72 -38.60 -0.38 -1.24 16 24 C -0.32 -7.11 7.01 -38.47 -0.27 -7.38 16 25 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 26 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.13 2.38 8.06 -52.48 -0.42 1.96 16 28 H 0.41 5.33 6.86 -40.82 -0.28 5.05 16 29 H 0.18 1.48 6.54 -52.49 -0.34 1.14 16 30 H 0.41 1.25 9.06 45.56 0.41 1.67 16 31 H 0.17 1.74 7.79 -52.49 -0.41 1.33 16 32 H 0.11 2.27 4.17 -52.48 -0.22 2.06 16 LS Contribution 288.08 15.07 4.34 4.34 Total: -1.00 -31.70 288.08 -4.38 -36.08 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -1.29 Total: 8.18 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -4.42 Total: -2.48 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 1.31 Total: -47.68 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.18 Total: -13.21 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.15 Total: 14.78 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.70 -4.38 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294624498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.770 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds