Wall clock time and date at job start Tue Mar 31 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86795 * 119.99901 * 2 1 4 4 H 1.48507 * 109.47363 * 275.18614 * 3 2 1 5 5 H 1.48499 * 109.47128 * 35.18436 * 3 2 1 6 6 H 1.48498 * 109.47046 * 155.18611 * 3 2 1 7 7 C 1.40027 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99805 * 342.95822 * 7 2 1 9 9 C 1.41541 * 120.00378 * 162.96353 * 7 2 1 10 10 C 1.41176 * 121.00093 * 154.42372 * 9 7 2 11 11 C 1.37583 * 119.02256 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.11248 * 0.02562 * 11 10 9 13 13 C 1.32487 * 122.22805 * 359.67627 * 12 11 10 14 14 N 1.39380 * 119.57852 * 180.29565 * 13 12 11 15 15 C 1.34776 * 120.00336 * 3.47722 * 14 13 12 16 16 O 1.21513 * 120.00227 * 4.85873 * 15 14 13 17 17 C 1.48110 * 119.99546 * 184.86071 * 15 14 13 18 18 C 1.39911 * 121.13065 * 359.71827 * 17 15 14 19 19 N 1.31762 * 119.78488 * 179.71228 * 18 17 15 20 20 N 1.28268 * 122.42031 * 0.58481 * 19 18 17 21 21 C 1.32283 * 122.44517 * 359.70222 * 20 19 18 22 22 O 1.35702 * 120.08154 * 180.02562 * 21 20 19 23 23 C 1.39229 * 119.83680 * 359.97438 * 21 20 19 24 24 C 1.38614 * 120.83523 * 0.59423 * 13 12 11 25 25 H 0.96995 * 120.00231 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.48611 * 0.03993 * 10 9 7 27 27 H 1.08008 * 119.44431 * 179.97438 * 11 10 9 28 28 H 0.97010 * 119.99459 * 183.47428 * 14 13 12 29 29 H 1.08002 * 120.10295 * 359.97438 * 18 17 15 30 30 H 0.96696 * 113.99824 * 269.97258 * 22 21 20 31 31 H 1.07997 * 121.11975 * 179.97438 * 23 21 20 32 32 H 1.08006 * 120.60486 * 179.72671 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3793 2.1097 -1.3944 5 1 1.4979 2.6185 0.8067 6 1 3.5894 1.4110 0.5876 7 6 2.0076 -1.2127 -0.0005 8 1 1.5032 -2.1276 0.2732 9 6 3.3764 -1.2395 -0.3597 10 6 4.2329 -2.2565 0.1148 11 6 5.5567 -2.2429 -0.2595 12 7 6.0327 -1.2980 -1.0501 13 6 5.2702 -0.3251 -1.5268 14 7 5.8291 0.6406 -2.3621 15 6 7.1200 0.5422 -2.7367 16 8 7.7720 -0.4329 -2.4195 17 6 7.7438 1.6227 -3.5349 18 6 7.0134 2.7529 -3.9179 19 7 7.5965 3.7010 -4.6231 20 7 8.8233 3.6287 -4.9907 21 6 9.5965 2.6000 -4.6845 22 8 10.8887 2.5735 -5.0982 23 6 9.0816 1.5451 -3.9359 24 6 3.9250 -0.2520 -1.2004 25 1 -0.4850 0.8400 0.0004 26 1 3.8543 -3.0340 0.7619 27 1 6.2181 -3.0175 0.0998 28 1 5.2888 1.3836 -2.6738 29 1 5.9763 2.8499 -3.6327 30 1 11.0166 2.1586 -5.9622 31 1 9.6942 0.6949 -3.6746 32 1 3.3077 0.5452 -1.5876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294624498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:23 Heat of formation + Delta-G solvation = 7.323295 kcal Electronic energy + Delta-G solvation = -21090.154446 eV Core-core repulsion = 17630.284229 eV Total energy + Delta-G solvation = -3459.870218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.58928 -41.35918 -39.77716 -38.68720 -36.32095 -35.72930 -34.52766 -33.23254 -32.63592 -30.77728 -27.98954 -26.87685 -25.68982 -24.27495 -23.53665 -21.87038 -20.36390 -19.78783 -19.32350 -18.64178 -17.88717 -17.42953 -17.24503 -16.97221 -16.54066 -16.29764 -15.86068 -15.66427 -15.14782 -14.81350 -14.75756 -14.61969 -14.45456 -13.50533 -13.33216 -12.77176 -12.68910 -12.63448 -12.60142 -11.87254 -11.80268 -11.56317 -11.50499 -11.23256 -10.99428 -10.73235 -10.18095 -9.77633 -9.08264 -8.99661 -6.74436 -1.00324 -0.45774 0.52895 0.75094 1.23314 1.39439 1.49576 1.56332 1.65170 2.08481 2.15610 2.35894 2.66103 2.95277 3.02236 3.28320 3.51638 3.58259 3.85585 3.98729 4.29146 4.45618 4.55315 4.58452 4.59247 4.71993 4.77331 5.09469 5.25404 5.41809 5.64593 5.94203 6.14068 6.29219 6.41522 6.49243 6.66038 6.89066 7.33803 7.59425 8.06375 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024090 B = 0.004370 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.027990 B = 6406.184625 C = 7431.551009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.051 3.949 3 Si 0.964 3.036 4 H -0.237 1.237 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.067 0.933 9 C 0.112 3.888 10 C -0.282 4.282 11 C 0.131 3.869 12 N -0.575 5.575 13 C 0.365 3.635 14 N -0.643 5.643 15 C 0.554 3.446 16 O -0.492 6.492 17 C -0.111 4.111 18 C 0.068 3.932 19 N -0.229 5.229 20 N -0.267 5.267 21 C 0.269 3.731 22 O -0.472 6.472 23 C -0.067 4.067 24 C -0.325 4.325 25 H 0.300 0.700 26 H 0.121 0.879 27 H 0.162 0.838 28 H 0.426 0.574 29 H 0.208 0.792 30 H 0.432 0.568 31 H 0.179 0.821 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.649 6.560 -8.765 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.167 4.167 3 Si 0.787 3.213 4 H -0.161 1.161 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.085 0.915 9 C 0.104 3.896 10 C -0.305 4.305 11 C -0.021 4.021 12 N -0.295 5.295 13 C 0.137 3.863 14 N -0.292 5.292 15 C 0.339 3.661 16 O -0.363 6.363 17 C -0.125 4.125 18 C -0.098 4.098 19 N -0.072 5.072 20 N -0.119 5.119 21 C 0.082 3.918 22 O -0.282 6.282 23 C -0.098 4.098 24 C -0.350 4.350 25 H 0.111 0.889 26 H 0.139 0.861 27 H 0.179 0.821 28 H 0.266 0.734 29 H 0.224 0.776 30 H 0.295 0.705 31 H 0.196 0.804 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.865 7.635 -9.048 18.231 hybrid contribution -1.374 -1.017 0.642 1.825 sum 12.491 6.618 -8.406 16.447 Atomic orbital electron populations 1.69649 1.09307 1.32236 1.34076 1.26939 0.95404 1.04559 0.89843 0.85519 0.79314 0.75950 0.80498 1.16118 1.20631 1.18103 1.19548 0.93278 0.96022 1.40523 0.91530 1.17856 0.92798 0.90851 0.88140 1.22089 0.94948 1.04554 1.08930 1.22347 0.93294 0.94620 0.91789 1.67394 1.37980 1.06007 1.18094 1.18056 0.88439 0.89177 0.90590 1.43242 1.11822 1.26640 1.47456 1.18288 0.81706 0.86121 0.79998 1.90883 1.61774 1.31316 1.52357 1.21077 0.95586 0.96052 0.99786 1.24973 1.03162 0.88796 0.92838 1.73051 1.01889 1.23419 1.08826 1.72722 0.99819 1.22295 1.17076 1.20701 0.86642 0.89939 0.94510 1.84782 1.16732 1.83426 1.43251 1.22933 0.94080 0.99307 0.93500 1.21241 0.94324 1.07536 1.11919 0.88911 0.86142 0.82098 0.73388 0.77552 0.70484 0.80369 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.34 13.92 21.84 0.30 -41.04 16 2 C 0.05 2.48 5.45 85.29 0.47 2.94 16 3 Si 0.96 37.64 24.41 68.60 1.67 39.32 16 4 H -0.24 -7.95 6.69 99.48 0.67 -7.28 16 5 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.26 -10.57 6.64 99.48 0.66 -9.91 16 7 C -0.46 -23.96 9.66 23.52 0.23 -23.73 16 8 H 0.07 3.70 8.06 -2.91 -0.02 3.67 16 9 C 0.11 5.35 5.24 -21.11 -0.11 5.24 16 10 C -0.28 -12.41 9.90 22.84 0.23 -12.19 16 11 C 0.13 5.42 11.15 84.50 0.94 6.36 16 12 N -0.57 -25.19 7.86 -193.58 -1.52 -26.71 16 13 C 0.37 14.97 7.41 132.78 0.98 15.96 16 14 N -0.64 -20.03 5.34 -311.06 -1.66 -21.69 16 15 C 0.55 16.77 7.75 86.86 0.67 17.44 16 16 O -0.49 -18.71 14.76 -3.76 -0.06 -18.76 16 17 C -0.11 -2.47 5.92 -19.85 -0.12 -2.59 16 18 C 0.07 1.32 10.84 85.11 0.92 2.24 16 19 N -0.23 -5.25 11.48 -56.50 -0.65 -5.90 16 20 N -0.27 -6.22 11.50 -170.30 -1.96 -8.18 16 21 C 0.27 5.17 7.85 84.86 0.67 5.84 16 22 O -0.47 -6.73 13.57 -90.22 -1.22 -7.95 16 23 C -0.07 -1.33 9.72 22.91 0.22 -1.11 16 24 C -0.32 -14.08 7.01 22.99 0.16 -13.92 16 25 H 0.30 13.28 8.29 -92.71 -0.77 12.51 16 26 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 27 H 0.16 5.52 8.06 -2.91 -0.02 5.50 16 28 H 0.43 9.70 6.86 -92.70 -0.64 9.06 16 29 H 0.21 2.62 6.54 -2.91 -0.02 2.60 16 30 H 0.43 1.31 9.06 -74.06 -0.67 0.64 16 31 H 0.18 3.22 7.79 -2.91 -0.02 3.20 16 32 H 0.12 4.78 4.17 -2.91 -0.01 4.77 16 Total: -1.00 -68.49 288.08 0.00 -68.49 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.17 Total: 19.96 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.26 Total: 2.47 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -5.49 Total: -103.52 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -1.28 Total: -26.71 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 1.67 Total: 39.32 kcal Total: -68.49 0.00 -68.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294624498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.809 kcal (2) G-P(sol) polarization free energy of solvation -68.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds