Wall clock time and date at job start Tue Mar 31 2020 05:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00101 * 2 1 4 4 N 1.46497 * 109.47522 * 124.99801 * 3 2 1 5 5 C 1.46506 * 119.99780 * 275.00070 * 4 3 2 6 6 C 1.50697 * 109.46791 * 274.99664 * 5 4 3 7 7 H 1.07997 * 120.00458 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99760 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99959 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99941 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.46821 * 89.99683 * 10 8 6 12 12 H 1.48497 * 109.47234 * 209.99732 * 10 8 6 13 13 H 1.48504 * 109.47237 * 329.99961 * 10 8 6 14 14 S 1.65591 * 120.00120 * 94.99842 * 4 3 2 15 15 O 1.42108 * 104.27924 * 333.92985 * 14 4 3 16 16 O 1.42103 * 104.27961 * 206.07333 * 14 4 3 17 17 C 1.81398 * 104.45056 * 90.00084 * 14 4 3 18 18 C 1.50706 * 109.47148 * 179.97438 * 17 14 4 19 19 C 1.35451 * 126.77304 * 90.00113 * 18 17 14 20 20 C 1.41379 * 103.98294 * 179.97438 * 19 18 17 21 21 N 1.30174 * 106.39679 * 0.02562 * 20 19 18 22 22 O 1.20920 * 111.60455 * 359.72499 * 21 20 19 23 23 H 1.08002 * 120.00097 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.00252 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99672 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47184 * 4.99590 * 3 2 1 27 27 H 1.09001 * 109.46959 * 245.00027 * 3 2 1 28 28 H 1.09005 * 109.47168 * 34.99907 * 5 4 3 29 29 H 1.08997 * 109.47042 * 154.99858 * 5 4 3 30 30 H 0.97005 * 119.99592 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.46753 * 60.00582 * 17 14 4 32 32 H 1.09000 * 109.47055 * 299.99917 * 17 14 4 33 33 H 1.08007 * 128.00627 * 359.97438 * 19 18 17 34 34 H 1.08005 * 126.79746 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5284 1.7622 2.4523 6 6 2.5991 3.2647 2.5448 7 1 2.9554 3.8414 1.7041 8 6 2.2088 3.9032 3.7029 9 7 2.2700 5.2144 3.7835 10 14 1.5931 2.9057 5.1573 11 1 2.7380 2.5501 6.0338 12 1 0.6105 3.7091 5.9281 13 1 0.9415 1.6649 4.6663 14 16 4.5712 0.8760 0.9174 15 8 4.5315 -0.0150 -0.1890 16 8 4.9847 0.4308 2.2019 17 6 5.4290 2.4101 0.4687 18 6 6.8913 2.1213 0.2460 19 6 7.4797 1.7703 -0.9224 20 6 8.8446 1.6199 -0.5859 21 7 8.9404 1.8808 0.6858 22 8 7.8670 2.1661 1.1639 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 1.4982 1.4372 2.5982 29 1 3.1612 1.3206 3.2221 30 1 1.9957 5.6635 4.5984 31 1 5.3210 3.1357 1.2749 32 1 4.9949 2.8151 -0.4454 33 1 7.0140 1.6362 -1.8876 34 1 9.6484 1.3426 -1.2519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309530114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:52 Heat of formation + Delta-G solvation = 22.733435 kcal Electronic energy + Delta-G solvation = -20978.347752 eV Core-core repulsion = 17622.296968 eV Total energy + Delta-G solvation = -3356.050784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.99618 -36.88111 -36.58557 -35.58372 -34.19607 -33.32588 -33.22912 -32.08836 -28.21441 -28.14494 -25.10427 -23.56076 -22.15962 -21.53062 -19.83769 -18.57138 -17.76510 -17.62445 -16.98976 -16.86034 -16.08935 -15.86137 -15.05716 -14.92730 -14.29052 -14.05207 -13.69842 -13.42532 -13.17452 -12.77223 -12.54497 -12.28182 -12.05539 -11.78337 -11.58504 -11.44608 -11.41052 -11.30047 -11.03606 -10.78073 -10.55980 -10.49280 -10.25704 -9.73245 -9.35891 -9.18800 -8.72829 -8.26118 -6.25025 -4.27689 0.39555 1.44695 2.18742 2.45403 2.82280 3.19119 3.25254 3.31595 3.34466 4.05544 4.24883 4.29345 4.30297 4.55833 4.93470 5.00202 5.11387 5.17097 5.20416 5.31091 5.49126 5.54645 5.72896 5.92199 5.98919 6.13973 6.25496 6.79757 6.86580 6.87620 7.04249 7.24790 7.44042 8.12850 8.28416 8.73729 9.35494 10.86853 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.006839 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.236089 B = 4093.422607 C = 5318.544690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.154 3.846 4 N -0.969 5.969 5 C 0.210 3.790 6 C -0.554 4.554 7 H 0.081 0.919 8 C 0.080 3.920 9 N -0.891 5.891 10 Si 0.868 3.132 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.261 1.261 14 S 2.613 3.387 15 O -0.959 6.959 16 O -0.942 6.942 17 C -0.560 4.560 18 C -0.021 4.021 19 C -0.221 4.221 20 C -0.011 4.011 21 N -0.360 5.360 22 O 0.111 5.889 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.267 0.733 31 H 0.171 0.829 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -6.485 -10.445 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.181 4.181 3 C 0.028 3.972 4 N -0.807 5.807 5 C 0.087 3.913 6 C -0.593 4.593 7 H 0.099 0.901 8 C -0.125 4.125 9 N -0.528 5.528 10 Si 0.695 3.305 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.186 1.186 14 S 2.702 3.298 15 O -0.949 6.949 16 O -0.932 6.932 17 C -0.684 4.684 18 C -0.086 4.086 19 C -0.244 4.244 20 C -0.189 4.189 21 N -0.062 5.062 22 O 0.042 5.958 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.127 0.873 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.189 0.811 32 H 0.175 0.825 33 H 0.198 0.802 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.764 -7.126 -9.330 12.670 hybrid contribution -0.821 0.466 -0.083 0.948 sum 3.943 -6.660 -9.414 12.187 Atomic orbital electron populations 1.23820 0.95822 1.01708 1.01203 1.23434 0.96277 0.99326 0.99092 1.20290 0.93244 0.95883 0.87786 1.57230 1.23794 1.82518 1.17156 1.19703 0.96973 0.96129 0.78495 1.21442 1.46265 0.89807 1.01759 0.90143 1.24838 0.94521 0.94764 0.98359 1.69881 1.46977 1.07781 1.28138 0.86949 0.79625 0.80746 0.83206 1.19502 1.20943 1.18591 1.05068 0.74202 0.76062 0.74419 1.93557 1.86120 1.59567 1.55637 1.93588 1.81854 1.78349 1.39426 1.29624 0.95836 1.27483 1.15453 1.23340 0.92041 1.03824 0.89399 1.22729 0.93853 1.07716 1.00116 1.25091 0.97904 1.03264 0.92649 1.73912 1.03446 1.16281 1.12520 1.84912 1.11186 1.63954 1.35712 0.88821 0.88270 0.87297 0.88994 0.90341 0.93885 0.93330 0.92292 0.81109 0.82495 0.80228 0.78725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 14.32 29.01 0.42 -2.01 16 2 C -0.16 -2.37 9.84 -36.03 -0.35 -2.72 16 3 C 0.15 2.35 5.69 -5.20 -0.03 2.32 16 4 N -0.97 -17.70 2.68 -116.95 -0.31 -18.01 16 5 C 0.21 4.59 4.48 -5.19 -0.02 4.57 16 6 C -0.55 -13.77 9.94 -34.44 -0.34 -14.12 16 7 H 0.08 2.05 8.06 -52.49 -0.42 1.63 16 8 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.89 -25.16 13.96 55.43 0.77 -24.38 16 10 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 14 S 2.61 46.07 5.35 -107.50 -0.58 45.49 16 15 O -0.96 -16.96 16.99 -57.54 -0.98 -17.93 16 16 O -0.94 -20.07 16.53 -57.54 -0.95 -21.02 16 17 C -0.56 -8.24 6.74 36.01 0.24 -8.00 16 18 C -0.02 -0.32 6.75 -35.30 -0.24 -0.55 16 19 C -0.22 -2.77 11.09 -39.38 -0.44 -3.20 16 20 C -0.01 -0.14 12.17 -17.06 -0.21 -0.34 16 21 N -0.36 -5.67 12.07 30.35 0.37 -5.30 16 22 O 0.11 1.88 11.20 17.18 0.19 2.07 16 23 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 24 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 25 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.09 1.40 7.76 -51.93 -0.40 0.99 16 27 H 0.08 0.99 7.61 -51.93 -0.40 0.60 16 28 H 0.04 0.93 7.17 -51.93 -0.37 0.56 16 29 H 0.05 1.11 6.24 -51.93 -0.32 0.79 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.17 2.68 8.14 -51.92 -0.42 2.26 16 32 H 0.16 1.76 8.14 -51.92 -0.42 1.33 16 33 H 0.18 1.65 8.06 -52.48 -0.42 1.23 16 34 H 0.20 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -31.86 315.00 -6.51 -38.37 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.03 Total: 2.53 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -1.07 Total: -22.05 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.83 Total: -47.69 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.74 Total: -36.88 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Atomic # 16 Polarization: 46.07 SS G_CDS: -0.58 Total: 45.49 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.86 -6.51 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309530114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.104 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds