Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 119.99690 * 2 1 4 4 H 1.48509 * 109.47015 * 274.98140 * 3 2 1 5 5 H 1.48497 * 109.47377 * 34.98207 * 3 2 1 6 6 H 1.48501 * 109.47192 * 154.98631 * 3 2 1 7 7 C 1.40046 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99766 * 186.15113 * 7 2 1 9 9 C 1.46371 * 120.00200 * 6.14559 * 7 2 1 10 10 O 1.21684 * 120.00086 * 353.93879 * 9 7 2 11 11 N 1.34780 * 120.00211 * 173.94679 * 9 7 2 12 12 C 1.46497 * 120.00193 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.46956 * 179.97438 * 12 11 9 14 14 C 1.37997 * 119.58741 * 95.00170 * 13 12 11 15 15 C 1.39240 * 119.08860 * 180.02562 * 14 13 12 16 16 O 1.35737 * 120.84470 * 179.97438 * 15 14 13 17 17 C 1.42905 * 117.00254 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47250 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.47148 * 300.00150 * 18 17 16 20 20 F 1.39901 * 109.47193 * 59.99914 * 18 17 16 21 21 C 1.39284 * 118.31182 * 0.25383 * 15 14 13 22 22 C 1.37952 * 119.08959 * 359.49851 * 21 15 14 23 23 N 1.31943 * 119.59180 * 275.01852 * 13 12 11 24 24 H 0.96995 * 119.99963 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99750 * 359.97438 * 11 9 7 26 26 H 1.09003 * 109.47225 * 59.99724 * 12 11 9 27 27 H 1.09001 * 109.46945 * 299.99726 * 12 11 9 28 28 H 1.07999 * 120.45003 * 359.97438 * 14 13 12 29 29 H 1.09001 * 109.47102 * 59.99757 * 17 16 15 30 30 H 1.09002 * 109.46941 * 299.99938 * 17 16 15 31 31 H 1.09001 * 109.47263 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.45801 * 179.72767 * 21 15 14 33 33 H 1.08001 * 119.59155 * 180.27306 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3949 5 1 1.4947 2.6200 0.8027 6 1 3.5870 1.4122 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0997 9 6 1.2815 -2.4768 -0.1368 10 8 0.0647 -2.4827 -0.1387 11 7 1.9612 -3.6341 -0.2601 12 6 1.2351 -4.8991 -0.3970 13 6 2.2201 -6.0331 -0.5179 14 6 2.5849 -6.7417 0.6086 15 6 3.4963 -7.7872 0.4850 16 8 3.8804 -8.5074 1.5695 17 6 4.8199 -9.5614 1.3489 18 6 5.1306 -10.2540 2.6773 19 9 5.6732 -9.3253 3.5718 20 9 3.9523 -10.7844 3.2135 21 6 4.0082 -8.0713 -0.7788 22 6 3.5893 -7.3193 -1.8567 23 7 2.7232 -6.3359 -1.6995 24 1 -0.4850 0.8400 0.0004 25 1 2.9311 -3.6293 -0.2588 26 1 0.6100 -4.8645 -1.2893 27 1 0.6074 -5.0545 0.4805 28 1 2.1699 -6.4883 1.5729 29 1 5.7381 -9.1481 0.9316 30 1 4.3972 -10.2848 0.6517 31 1 5.8469 -11.0582 2.5089 32 1 4.7205 -8.8718 -0.9136 33 1 3.9777 -7.5355 -2.8410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320506472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = -143.003690 kcal Electronic energy + Delta-G solvation = -21310.919559 eV Core-core repulsion = 17393.841488 eV Total energy + Delta-G solvation = -3917.078071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.36634 -47.39671 -40.80522 -38.70802 -37.11662 -33.72448 -32.36333 -32.13967 -30.92131 -30.23171 -27.15128 -25.34254 -23.86849 -23.52236 -21.59450 -19.69576 -18.82833 -17.96258 -17.64106 -17.50249 -17.05178 -16.08478 -16.04714 -15.72810 -15.31578 -14.96537 -14.49425 -14.23346 -14.06588 -13.78374 -13.74130 -13.39137 -13.19225 -13.08831 -12.63381 -12.16421 -11.97792 -11.58147 -11.39226 -11.33007 -11.10565 -10.88415 -10.42955 -10.19580 -9.49043 -9.23089 -9.05278 -8.81756 -7.59123 -7.50615 -6.16696 -4.60468 0.98523 1.25397 2.37717 3.17183 3.22840 3.24062 3.27815 3.60201 3.68747 3.88576 4.15214 4.28311 4.30230 4.42584 4.61368 4.62081 4.72763 4.77303 5.05284 5.13304 5.24445 5.56596 5.71846 5.81258 5.89174 6.21823 6.45892 6.49260 6.87959 7.47110 7.92908 8.05925 8.07939 8.35587 9.05537 9.53616 10.61980 10.80036 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023690 B = 0.003038 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.647166 B = 9214.827961 C = 9674.108351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.557 3.443 10 O -0.579 6.579 11 N -0.759 5.759 12 C 0.180 3.820 13 C 0.166 3.834 14 C -0.184 4.184 15 C 0.164 3.836 16 O -0.298 6.298 17 C 0.003 3.997 18 C 0.274 3.726 19 F -0.196 7.196 20 F -0.197 7.197 21 C -0.269 4.269 22 C 0.137 3.863 23 N -0.490 5.490 24 H 0.268 0.732 25 H 0.381 0.619 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.146 0.854 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.320 -21.816 1.079 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.462 6.462 11 N -0.415 5.415 12 C 0.055 3.945 13 C 0.029 3.971 14 C -0.206 4.206 15 C 0.111 3.889 16 O -0.209 6.209 17 C -0.073 4.073 18 C 0.220 3.780 19 F -0.177 7.177 20 F -0.178 7.178 21 C -0.291 4.291 22 C -0.021 4.021 23 N -0.202 5.202 24 H 0.079 0.921 25 H 0.212 0.788 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.878 -21.211 0.641 24.319 hybrid contribution 1.413 0.037 0.622 1.544 sum 13.290 -21.175 1.262 25.032 Atomic orbital electron populations 1.70027 1.07066 1.27275 1.35254 1.25703 0.94612 1.00284 0.92610 0.86345 0.80211 0.81442 0.78664 1.19797 1.20463 1.18906 1.20854 0.94106 0.89403 1.53711 0.91372 1.18237 0.87137 0.82127 0.76370 1.90602 1.14036 1.86146 1.55424 1.46115 1.08634 1.04768 1.81986 1.19775 0.91291 0.81323 1.02114 1.21499 0.93933 0.94556 0.87078 1.21434 1.00760 0.96657 1.01708 1.19231 0.93092 0.90876 0.85668 1.86133 1.58738 1.44344 1.31715 1.24076 0.94953 0.90897 0.97384 1.22018 0.83071 0.88437 0.84449 1.93048 1.85769 1.68254 1.70640 1.93041 1.50291 1.86708 1.87775 1.22139 1.07323 1.06315 0.93290 1.22598 0.91624 0.89468 0.98372 1.67666 1.10504 1.16176 1.25893 0.92100 0.78766 0.91030 0.91357 0.83605 0.88583 0.88630 0.85028 0.84675 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.30 11.85 55.55 0.66 -22.64 16 2 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 3 Si 0.91 20.44 29.56 -169.99 -5.03 15.41 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -15.66 9.53 -35.63 -0.34 -16.00 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.56 16.19 7.74 -12.99 -0.10 16.09 16 10 O -0.58 -19.02 15.05 5.20 0.08 -18.94 16 11 N -0.76 -17.69 5.54 -62.91 -0.35 -18.04 16 12 C 0.18 3.64 5.98 -5.20 -0.03 3.61 16 13 C 0.17 2.76 6.14 -82.63 -0.51 2.26 16 14 C -0.18 -2.73 9.68 -39.30 -0.38 -3.11 16 15 C 0.16 2.05 6.74 -38.82 -0.26 1.79 16 16 O -0.30 -3.42 10.04 -18.92 -0.19 -3.61 16 17 C 0.00 0.02 4.99 37.16 0.19 0.21 16 18 C 0.27 1.67 5.63 37.16 0.21 1.88 16 19 F -0.20 -1.87 17.28 2.25 0.04 -1.83 16 20 F -0.20 -1.83 17.28 2.25 0.04 -1.79 16 21 C -0.27 -2.76 9.11 -39.30 -0.36 -3.12 16 22 C 0.14 1.63 11.17 -17.59 -0.20 1.44 16 23 N -0.49 -7.83 10.27 -9.55 -0.10 -7.93 16 24 H 0.27 7.36 8.29 -40.82 -0.34 7.03 16 25 H 0.38 8.11 8.44 -40.82 -0.34 7.76 16 26 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 28 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.10 0.41 7.70 -51.93 -0.40 0.01 16 30 H 0.10 0.39 7.72 -51.93 -0.40 -0.01 16 31 H 0.13 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.14 0.86 6.47 -52.49 -0.34 0.52 16 33 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 307.33 15.07 4.63 4.63 Total: -1.00 -37.63 307.33 -5.23 -42.86 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -3.14 Total: 4.42 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.88 Total: 7.43 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.21 Total: -48.61 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.11 Total: -22.55 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -37.63 -5.23 -42.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320506472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.139 kcal (2) G-P(sol) polarization free energy of solvation -37.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds