Wall clock time and date at job start Tue Mar 31 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 119.99690 * 2 1 4 4 H 1.48509 * 109.47015 * 274.98140 * 3 2 1 5 5 H 1.48497 * 109.47377 * 34.98207 * 3 2 1 6 6 H 1.48501 * 109.47192 * 154.98631 * 3 2 1 7 7 C 1.40046 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99766 * 186.15113 * 7 2 1 9 9 C 1.46371 * 120.00200 * 6.14559 * 7 2 1 10 10 O 1.21684 * 120.00086 * 353.93879 * 9 7 2 11 11 N 1.34780 * 120.00211 * 173.94679 * 9 7 2 12 12 C 1.46497 * 120.00193 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.46956 * 179.97438 * 12 11 9 14 14 C 1.37997 * 119.58741 * 95.00170 * 13 12 11 15 15 C 1.39240 * 119.08860 * 180.02562 * 14 13 12 16 16 O 1.35737 * 120.84470 * 179.97438 * 15 14 13 17 17 C 1.42905 * 117.00254 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47250 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.47148 * 300.00150 * 18 17 16 20 20 F 1.39901 * 109.47193 * 59.99914 * 18 17 16 21 21 C 1.39284 * 118.31182 * 0.25383 * 15 14 13 22 22 C 1.37952 * 119.08959 * 359.49851 * 21 15 14 23 23 N 1.31943 * 119.59180 * 275.01852 * 13 12 11 24 24 H 0.96995 * 119.99963 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99750 * 359.97438 * 11 9 7 26 26 H 1.09003 * 109.47225 * 59.99724 * 12 11 9 27 27 H 1.09001 * 109.46945 * 299.99726 * 12 11 9 28 28 H 1.07999 * 120.45003 * 359.97438 * 14 13 12 29 29 H 1.09001 * 109.47102 * 59.99757 * 17 16 15 30 30 H 1.09002 * 109.46941 * 299.99938 * 17 16 15 31 31 H 1.09001 * 109.47263 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.45801 * 179.72767 * 21 15 14 33 33 H 1.08001 * 119.59155 * 180.27306 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3949 5 1 1.4947 2.6200 0.8027 6 1 3.5870 1.4122 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0997 9 6 1.2815 -2.4768 -0.1368 10 8 0.0647 -2.4827 -0.1387 11 7 1.9612 -3.6341 -0.2601 12 6 1.2351 -4.8991 -0.3970 13 6 2.2201 -6.0331 -0.5179 14 6 2.5849 -6.7417 0.6086 15 6 3.4963 -7.7872 0.4850 16 8 3.8804 -8.5074 1.5695 17 6 4.8199 -9.5614 1.3489 18 6 5.1306 -10.2540 2.6773 19 9 5.6732 -9.3253 3.5718 20 9 3.9523 -10.7844 3.2135 21 6 4.0082 -8.0713 -0.7788 22 6 3.5893 -7.3193 -1.8567 23 7 2.7232 -6.3359 -1.6995 24 1 -0.4850 0.8400 0.0004 25 1 2.9311 -3.6293 -0.2588 26 1 0.6100 -4.8645 -1.2893 27 1 0.6074 -5.0545 0.4805 28 1 2.1699 -6.4883 1.5729 29 1 5.7381 -9.1481 0.9316 30 1 4.3972 -10.2848 0.6517 31 1 5.8469 -11.0582 2.5089 32 1 4.7205 -8.8718 -0.9136 33 1 3.9777 -7.5355 -2.8410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320506472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:48 Heat of formation + Delta-G solvation = -172.530756 kcal Electronic energy + Delta-G solvation = -21312.199949 eV Core-core repulsion = 17393.841488 eV Total energy + Delta-G solvation = -3918.358461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.92313 -47.98589 -41.78054 -39.78699 -39.08935 -35.52350 -34.51391 -32.99610 -32.35200 -30.92554 -29.02462 -27.02726 -24.69257 -24.42204 -22.65175 -21.75419 -19.84575 -19.08964 -18.51076 -18.40686 -17.93967 -17.48495 -17.03309 -16.77576 -16.62594 -16.36567 -16.01332 -15.61081 -15.07103 -14.89703 -14.63899 -14.56257 -14.42770 -14.34801 -13.89784 -13.40076 -13.36835 -13.10961 -12.73819 -12.64699 -12.61634 -12.36458 -12.00077 -11.98888 -10.93582 -10.57814 -10.33679 -10.00865 -9.82874 -9.55995 -8.30976 -6.86839 -0.06245 0.26170 1.40702 1.42341 1.58458 1.70518 2.24889 2.45502 2.60774 2.77984 3.14302 3.29152 3.34723 3.47923 3.58831 3.60575 3.77239 3.95962 4.06135 4.12162 4.23954 4.36580 4.46115 4.64509 4.75223 4.85211 4.96212 5.31528 5.43011 5.84004 6.04469 6.11169 6.22790 6.85261 7.00556 7.47064 8.44898 8.65203 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023690 B = 0.003038 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.647166 B = 9214.827961 C = 9674.108351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.540 3.460 10 O -0.630 6.630 11 N -0.746 5.746 12 C 0.185 3.815 13 C 0.149 3.851 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.322 6.322 17 C -0.011 4.011 18 C 0.263 3.737 19 F -0.220 7.220 20 F -0.220 7.220 21 C -0.242 4.242 22 C 0.134 3.866 23 N -0.524 5.524 24 H 0.276 0.724 25 H 0.392 0.608 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.191 0.809 32 H 0.187 0.813 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.851 -23.254 0.345 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.609 4.609 8 H 0.105 0.895 9 C 0.344 3.656 10 O -0.517 6.517 11 N -0.401 5.401 12 C 0.060 3.940 13 C 0.013 3.987 14 C -0.221 4.221 15 C 0.113 3.887 16 O -0.234 6.234 17 C -0.085 4.085 18 C 0.210 3.790 19 F -0.202 7.202 20 F -0.201 7.201 21 C -0.263 4.263 22 C -0.023 4.023 23 N -0.237 5.237 24 H 0.086 0.914 25 H 0.225 0.775 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.153 0.847 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.208 0.792 32 H 0.204 0.796 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 15.458 -22.710 -0.087 27.472 hybrid contribution 0.395 0.258 0.857 0.978 sum 15.853 -22.453 0.769 27.496 Atomic orbital electron populations 1.70188 1.09572 1.29099 1.36126 1.27015 0.95569 1.05014 0.91127 0.84953 0.78842 0.74894 0.79232 1.18698 1.19534 1.17194 1.21389 0.95173 0.90108 1.54238 0.89541 1.18640 0.86803 0.83940 0.76181 1.90550 1.16068 1.87330 1.57773 1.45753 1.09064 1.04847 1.80400 1.19649 0.92145 0.81641 1.00527 1.20727 0.94953 0.94562 0.88444 1.21310 1.02117 0.98074 1.00593 1.19206 0.92298 0.90139 0.87012 1.86115 1.59984 1.45538 1.31782 1.24616 0.95244 0.90289 0.98399 1.22832 0.83265 0.89418 0.83460 1.92998 1.86045 1.69477 1.71668 1.92994 1.51983 1.86982 1.88181 1.22594 1.06293 1.06114 0.91270 1.23259 0.90276 0.88175 1.00632 1.67543 1.12204 1.18425 1.25534 0.91417 0.77508 0.93311 0.92312 0.84701 0.85777 0.85603 0.79238 0.79566 0.78728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.41 11.85 21.84 0.26 -51.16 16 2 C 0.03 1.60 5.49 85.30 0.47 2.07 16 3 Si 1.00 41.93 29.56 68.60 2.03 43.96 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 7 C -0.57 -33.70 9.53 24.83 0.24 -33.46 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 9 C 0.54 32.88 7.74 86.36 0.67 33.55 16 10 O -0.63 -43.83 15.05 -4.30 -0.06 -43.89 16 11 N -0.75 -36.52 5.54 -471.15 -2.61 -39.13 16 12 C 0.19 8.04 5.98 85.63 0.51 8.55 16 13 C 0.15 5.12 6.14 42.48 0.26 5.38 16 14 C -0.20 -6.00 9.68 22.45 0.22 -5.78 16 15 C 0.17 3.82 6.74 22.76 0.15 3.98 16 16 O -0.32 -6.69 10.04 -90.61 -0.91 -7.60 16 17 C -0.01 -0.09 4.99 71.98 0.36 0.27 16 18 C 0.26 2.38 5.63 71.98 0.41 2.78 16 19 F -0.22 -3.82 17.28 44.97 0.78 -3.04 16 20 F -0.22 -3.70 17.28 44.97 0.78 -2.93 16 21 C -0.24 -3.93 9.11 22.45 0.20 -3.73 16 22 C 0.13 2.76 11.17 84.60 0.95 3.71 16 23 N -0.52 -16.48 10.27 -184.12 -1.89 -18.37 16 24 H 0.28 15.56 8.29 -92.71 -0.77 14.79 16 25 H 0.39 17.23 8.44 -92.71 -0.78 16.45 16 26 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.59 8.04 -2.39 -0.02 2.58 16 28 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 29 H 0.12 0.37 7.70 -2.39 -0.02 0.36 16 30 H 0.13 0.32 7.72 -2.39 -0.02 0.30 16 31 H 0.19 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.19 1.06 6.47 -2.91 -0.02 1.04 16 33 H 0.20 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -88.50 307.33 3.18 -85.32 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.39 Total: 19.52 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 4.43 Total: 17.32 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -4.24 Total: -108.66 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.97 Total: -51.49 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 1.55 Total: -5.97 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -88.50 3.18 -85.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320506472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.210 kcal (2) G-P(sol) polarization free energy of solvation -88.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds