Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47074 * 287.45745 * 3 2 1 5 5 C 1.36914 * 120.00210 * 279.06877 * 4 3 2 6 6 H 1.08000 * 119.99769 * 39.17944 * 5 4 3 7 7 C 1.38997 * 120.00242 * 219.17663 * 5 4 3 8 8 N 1.31389 * 120.00131 * 18.64448 * 7 5 4 9 9 Si 1.86800 * 119.99767 * 198.64216 * 7 5 4 10 10 H 1.48500 * 109.47601 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47054 * 120.00216 * 9 7 5 12 12 H 1.48498 * 109.47170 * 239.99945 * 9 7 5 13 13 C 1.34779 * 119.99923 * 99.08008 * 4 3 2 14 14 O 1.21636 * 120.00187 * 186.75266 * 13 4 3 15 15 C 1.47436 * 119.99820 * 6.74609 * 13 4 3 16 16 C 1.46409 * 120.26146 * 332.40877 * 15 13 4 17 17 C 1.35584 * 119.10318 * 180.02562 * 16 15 13 18 18 C 1.41173 * 119.49907 * 0.26002 * 17 16 15 19 19 N 1.32070 * 132.77800 * 179.74237 * 18 17 16 20 20 N 1.28600 * 109.72075 * 180.02562 * 19 18 17 21 21 C 1.31112 * 110.34686 * 359.47469 * 20 19 18 22 22 O 1.35676 * 126.33664 * 179.97438 * 21 20 19 23 23 N 1.36544 * 107.32396 * 0.59595 * 21 20 19 24 24 C 1.36027 * 133.09560 * 179.34243 * 23 21 20 25 25 H 4.40634 * 5.51521 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46582 * 167.45842 * 3 2 1 27 27 H 1.09006 * 109.46930 * 47.46148 * 3 2 1 28 28 H 0.97004 * 120.00276 * 184.91286 * 8 7 5 29 29 H 1.08006 * 120.45464 * 0.02562 * 16 15 13 30 30 H 1.08005 * 120.25167 * 179.97438 * 17 16 15 31 31 H 0.96703 * 114.00132 * 270.79391 * 22 21 20 32 32 H 1.07994 * 119.80108 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.4135 1.3176 5 6 3.1861 0.4912 2.3440 6 1 2.3930 1.2138 2.4672 7 6 4.2592 0.4795 3.2274 8 7 5.3791 -0.1207 2.8929 9 14 4.1091 1.3174 4.8902 10 1 2.7561 1.9149 5.0232 11 1 4.3163 0.3177 5.9687 12 1 5.1353 2.3850 5.0010 13 6 3.5334 -1.6850 1.5193 14 8 3.8221 -2.0614 2.6393 15 6 3.6196 -2.6197 0.3824 16 6 2.7614 -2.4370 -0.7897 17 6 2.8598 -3.3108 -1.8217 18 6 3.7803 -4.3783 -1.7434 19 7 4.0853 -5.3621 -2.5700 20 7 5.0019 -6.0984 -2.0488 21 6 5.3471 -5.6324 -0.8729 22 8 6.2826 -6.1584 -0.0428 23 7 4.5812 -4.5279 -0.6323 24 6 4.4997 -3.6636 0.4149 25 1 -1.0499 0.0001 0.0003 26 1 3.0088 1.0040 -0.2232 27 1 3.0097 -0.6940 -0.7573 28 1 6.1024 -0.1909 3.5354 29 1 2.0593 -1.6173 -0.8317 30 1 2.2354 -3.1938 -2.6952 31 1 5.9362 -6.8211 0.5704 32 1 5.1352 -3.8033 1.2768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322588351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = 150.516328 kcal Electronic energy + Delta-G solvation = -21991.607869 eV Core-core repulsion = 18537.946967 eV Total energy + Delta-G solvation = -3453.660902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.39797 -39.43242 -37.73894 -37.11388 -35.38507 -33.63387 -32.80809 -31.61018 -30.72878 -28.85898 -26.96460 -25.58768 -23.77769 -23.35769 -22.38994 -20.25501 -19.30819 -18.34534 -18.15201 -17.13358 -16.70753 -16.38951 -15.89991 -15.10288 -14.89632 -14.77713 -14.49640 -14.22479 -13.77838 -13.06330 -12.85190 -12.57663 -12.27077 -12.02111 -11.83623 -11.58664 -11.24584 -11.07071 -10.95877 -10.72550 -10.43032 -10.39881 -10.15736 -9.85280 -9.21394 -9.11168 -8.56035 -7.98450 -7.55421 -6.40556 -4.13146 0.73611 0.92743 1.98791 2.51821 3.01845 3.06445 3.16510 3.24783 3.28778 3.30211 3.66745 4.04149 4.22210 4.29226 4.44260 4.69769 4.75537 4.92851 4.94633 5.06444 5.24060 5.59369 5.62165 5.72578 5.95452 5.98328 6.06957 6.13426 6.24939 6.35280 6.64425 7.26298 7.36783 7.88684 7.92916 8.47765 8.67543 8.80353 9.28389 9.86755 10.67036 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.005776 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.546931 B = 4846.637069 C = 6089.098726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C 0.166 3.834 4 N -0.429 5.429 5 C -0.337 4.337 6 H 0.088 0.912 7 C 0.067 3.933 8 N -0.823 5.823 9 Si 0.916 3.084 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.515 3.485 14 O -0.525 6.525 15 C -0.111 4.111 16 C -0.090 4.090 17 C -0.096 4.096 18 C 0.211 3.789 19 N -0.284 5.284 20 N -0.245 5.245 21 C 0.308 3.692 22 O -0.428 6.428 23 N -0.394 5.394 24 C 0.102 3.898 25 H 0.214 0.786 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.270 0.730 29 H 0.180 0.820 30 H 0.162 0.838 31 H 0.402 0.598 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 -3.686 -6.103 8.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C 0.043 3.957 4 N -0.148 5.148 5 C -0.463 4.463 6 H 0.105 0.895 7 C -0.145 4.145 8 N -0.456 5.456 9 Si 0.742 3.258 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.303 3.697 14 O -0.404 6.404 15 C -0.119 4.119 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.039 4.039 19 N -0.132 5.132 20 N -0.096 5.096 21 C 0.008 3.992 22 O -0.227 6.227 23 N -0.085 5.085 24 C -0.022 4.022 25 H 0.231 0.769 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.196 0.804 30 H 0.179 0.821 31 H 0.259 0.741 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.740 -4.592 -6.919 9.108 hybrid contribution -0.246 0.837 2.322 2.481 sum -3.986 -3.756 -4.597 7.150 Atomic orbital electron populations 1.24831 0.95783 1.01572 1.00551 1.23891 0.95167 0.99647 1.00016 1.19608 0.83329 1.03054 0.89665 1.43082 1.56976 1.07137 1.07600 1.19187 1.05608 1.14380 1.07130 0.89451 1.25220 0.93235 0.96152 0.99849 1.69848 1.02897 1.38540 1.34340 0.86079 0.78320 0.78586 0.82778 1.19331 1.20415 1.20922 1.17086 0.84968 0.81178 0.86483 1.90654 1.50864 1.75316 1.23530 1.21268 0.96819 0.96887 0.96888 1.23561 0.98369 0.98186 0.91226 1.20206 0.98158 0.91737 1.01647 1.22093 0.96180 1.00099 0.85535 1.74867 1.11459 1.03872 1.23029 1.74428 1.09376 1.21279 1.04522 1.21750 0.95174 0.89063 0.93227 1.85008 1.28351 1.59027 1.50286 1.43939 1.27293 1.21564 1.15693 1.21711 1.00072 0.89738 0.90649 0.76938 0.88682 0.87103 0.92004 0.80354 0.82094 0.74074 0.80258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.89 19.25 29.55 0.57 -2.32 16 2 C -0.19 -2.98 11.71 -37.12 -0.43 -3.42 16 3 C 0.17 2.90 5.40 -6.83 -0.04 2.86 16 4 N -0.43 -9.76 2.53 -119.16 -0.30 -10.06 16 5 C -0.34 -8.51 9.19 -15.00 -0.14 -8.65 16 6 H 0.09 2.15 7.90 -52.49 -0.41 1.73 16 7 C 0.07 1.74 4.38 -17.46 -0.08 1.66 16 8 N -0.82 -22.44 11.50 55.50 0.64 -21.81 16 9 Si 0.92 20.42 29.60 -169.99 -5.03 15.39 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 C 0.52 12.02 6.61 -12.51 -0.08 11.94 16 14 O -0.53 -14.24 14.30 5.25 0.08 -14.16 16 15 C -0.11 -2.08 5.72 -103.46 -0.59 -2.67 16 16 C -0.09 -1.34 7.72 -37.24 -0.29 -1.63 16 17 C -0.10 -1.32 10.09 -39.42 -0.40 -1.72 16 18 C 0.21 3.46 7.90 -155.70 -1.23 2.23 16 19 N -0.28 -4.99 12.28 31.26 0.38 -4.61 16 20 N -0.25 -4.32 12.20 29.73 0.36 -3.96 16 21 C 0.31 5.00 9.39 -88.48 -0.83 4.17 16 22 O -0.43 -5.64 13.65 -18.73 -0.26 -5.89 16 23 N -0.39 -6.62 2.95 -63.65 -0.19 -6.81 16 24 C 0.10 1.81 10.53 -16.29 -0.17 1.63 16 25 H 0.21 2.09 7.80 -54.10 -0.42 1.67 16 26 H 0.10 1.59 8.11 -51.93 -0.42 1.17 16 27 H 0.11 1.69 3.72 -57.48 -0.21 1.47 16 28 H 0.27 7.07 8.32 -40.82 -0.34 6.73 16 29 H 0.18 2.47 3.16 -52.48 -0.17 2.30 16 30 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.40 3.03 9.06 45.56 0.41 3.45 16 32 H 0.18 3.20 7.82 -52.49 -0.41 2.79 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -33.25 292.15 -4.82 -38.07 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -1.19 Total: 5.36 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -3.71 Total: 4.08 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.90 Total: -47.24 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.18 Total: -20.06 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.25 -4.82 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322588351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.583 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds