Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47074 * 287.45745 * 3 2 1 5 5 C 1.36914 * 120.00210 * 279.06877 * 4 3 2 6 6 H 1.08000 * 119.99769 * 39.17944 * 5 4 3 7 7 C 1.38997 * 120.00242 * 219.17663 * 5 4 3 8 8 N 1.31389 * 120.00131 * 18.64448 * 7 5 4 9 9 Si 1.86800 * 119.99767 * 198.64216 * 7 5 4 10 10 H 1.48500 * 109.47601 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47054 * 120.00216 * 9 7 5 12 12 H 1.48498 * 109.47170 * 239.99945 * 9 7 5 13 13 C 1.34779 * 119.99923 * 99.08008 * 4 3 2 14 14 O 1.21636 * 120.00187 * 186.75266 * 13 4 3 15 15 C 1.47436 * 119.99820 * 6.74609 * 13 4 3 16 16 C 1.46409 * 120.26146 * 332.40877 * 15 13 4 17 17 C 1.35584 * 119.10318 * 180.02562 * 16 15 13 18 18 C 1.41173 * 119.49907 * 0.26002 * 17 16 15 19 19 N 1.32070 * 132.77800 * 179.74237 * 18 17 16 20 20 N 1.28600 * 109.72075 * 180.02562 * 19 18 17 21 21 C 1.31112 * 110.34686 * 359.47469 * 20 19 18 22 22 O 1.35676 * 126.33664 * 179.97438 * 21 20 19 23 23 N 1.36544 * 107.32396 * 0.59595 * 21 20 19 24 24 C 1.36027 * 133.09560 * 179.34243 * 23 21 20 25 25 H 4.40634 * 5.51521 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46582 * 167.45842 * 3 2 1 27 27 H 1.09006 * 109.46930 * 47.46148 * 3 2 1 28 28 H 0.97004 * 120.00276 * 184.91286 * 8 7 5 29 29 H 1.08006 * 120.45464 * 0.02562 * 16 15 13 30 30 H 1.08005 * 120.25167 * 179.97438 * 17 16 15 31 31 H 0.96703 * 114.00132 * 270.79391 * 22 21 20 32 32 H 1.07994 * 119.80108 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.4135 1.3176 5 6 3.1861 0.4912 2.3440 6 1 2.3930 1.2138 2.4672 7 6 4.2592 0.4795 3.2274 8 7 5.3791 -0.1207 2.8929 9 14 4.1091 1.3174 4.8902 10 1 2.7561 1.9149 5.0232 11 1 4.3163 0.3177 5.9687 12 1 5.1353 2.3850 5.0010 13 6 3.5334 -1.6850 1.5193 14 8 3.8221 -2.0614 2.6393 15 6 3.6196 -2.6197 0.3824 16 6 2.7614 -2.4370 -0.7897 17 6 2.8598 -3.3108 -1.8217 18 6 3.7803 -4.3783 -1.7434 19 7 4.0853 -5.3621 -2.5700 20 7 5.0019 -6.0984 -2.0488 21 6 5.3471 -5.6324 -0.8729 22 8 6.2826 -6.1584 -0.0428 23 7 4.5812 -4.5279 -0.6323 24 6 4.4997 -3.6636 0.4149 25 1 -1.0499 0.0001 0.0003 26 1 3.0088 1.0040 -0.2232 27 1 3.0097 -0.6940 -0.7573 28 1 6.1024 -0.1909 3.5354 29 1 2.0593 -1.6173 -0.8317 30 1 2.2354 -3.1938 -2.6952 31 1 5.9362 -6.8211 0.5704 32 1 5.1352 -3.8033 1.2768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322588351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = 126.123615 kcal Electronic energy + Delta-G solvation = -21992.665616 eV Core-core repulsion = 18537.946967 eV Total energy + Delta-G solvation = -3454.718649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.70134 -41.00421 -38.90470 -38.52499 -36.99152 -35.09658 -34.29108 -33.09531 -32.18932 -30.16536 -28.46591 -27.19119 -25.29477 -24.69358 -23.65849 -21.85435 -20.60034 -19.66885 -19.44289 -18.44319 -18.31179 -17.77729 -17.40345 -16.56376 -16.51509 -16.00961 -15.85640 -15.63879 -15.40704 -14.59843 -14.32671 -13.73006 -13.65259 -13.50626 -13.44341 -13.12140 -12.85856 -12.80513 -12.44902 -12.15396 -11.98956 -11.68458 -11.47554 -11.09593 -10.92986 -10.64517 -10.29687 -9.42370 -9.24691 -8.32456 -6.08055 -0.58154 -0.32659 0.70132 1.19752 1.39465 1.45391 1.53939 1.81932 1.86593 1.96935 2.28574 2.46979 2.63836 2.98599 2.99057 3.18185 3.45075 3.48826 3.65458 3.66564 3.86291 4.28405 4.40219 4.43432 4.69940 4.72062 4.78440 4.89224 5.14401 5.18637 5.39736 5.44305 6.05540 6.25093 6.76537 6.84779 6.99405 7.16987 7.46519 8.08758 8.75028 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.005776 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.546931 B = 4846.637069 C = 6089.098726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.238 4.238 3 C 0.167 3.833 4 N -0.443 5.443 5 C -0.352 4.352 6 H 0.088 0.912 7 C 0.021 3.979 8 N -0.860 5.860 9 Si 0.971 3.029 10 H -0.257 1.257 11 H -0.292 1.292 12 H -0.274 1.274 13 C 0.509 3.491 14 O -0.577 6.577 15 C -0.123 4.123 16 C -0.089 4.089 17 C -0.070 4.070 18 C 0.204 3.796 19 N -0.295 5.295 20 N -0.265 5.265 21 C 0.318 3.682 22 O -0.430 6.430 23 N -0.400 5.400 24 C 0.108 3.892 25 H 0.253 0.747 26 H 0.094 0.906 27 H 0.134 0.866 28 H 0.264 0.736 29 H 0.195 0.805 30 H 0.206 0.794 31 H 0.428 0.572 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 -3.682 -7.568 10.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.239 4.239 3 C 0.046 3.954 4 N -0.162 5.162 5 C -0.479 4.479 6 H 0.106 0.894 7 C -0.187 4.187 8 N -0.495 5.495 9 Si 0.796 3.204 10 H -0.181 1.181 11 H -0.219 1.219 12 H -0.200 1.200 13 C 0.298 3.702 14 O -0.459 6.459 15 C -0.130 4.130 16 C -0.112 4.112 17 C -0.091 4.091 18 C -0.046 4.046 19 N -0.143 5.143 20 N -0.115 5.115 21 C 0.017 3.983 22 O -0.233 6.233 23 N -0.091 5.091 24 C -0.016 4.016 25 H 0.270 0.730 26 H 0.112 0.888 27 H 0.151 0.849 28 H 0.074 0.926 29 H 0.212 0.788 30 H 0.223 0.777 31 H 0.289 0.711 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.644 -4.589 -8.424 11.130 hybrid contribution 0.280 0.707 2.696 2.801 sum -5.365 -3.882 -5.728 8.755 Atomic orbital electron populations 1.25742 0.96527 0.98781 0.97471 1.23692 0.95212 1.02248 1.02739 1.19685 0.84708 1.03568 0.87463 1.43267 1.56939 1.06735 1.09221 1.19384 1.05354 1.14522 1.08614 0.89415 1.25998 0.93116 0.96834 1.02715 1.69935 1.03546 1.41069 1.34953 0.85238 0.78942 0.77484 0.78756 1.18052 1.21896 1.19989 1.17708 0.83534 0.81853 0.87080 1.90603 1.52778 1.76576 1.25911 1.20940 0.98611 0.96355 0.97133 1.23506 0.98269 0.99342 0.90105 1.20676 0.96773 0.89449 1.02164 1.22617 0.96431 1.00480 0.85089 1.74818 1.11781 1.04257 1.23410 1.74409 1.10101 1.21877 1.05113 1.21920 0.94493 0.88620 0.93261 1.84964 1.27983 1.59823 1.50487 1.43996 1.27836 1.21657 1.15640 1.21476 0.99801 0.89678 0.90637 0.73042 0.88755 0.84939 0.92640 0.78827 0.77690 0.71060 0.81215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 19.25 74.32 1.43 -2.57 16 2 C -0.24 -7.11 11.71 31.13 0.36 -6.74 16 3 C 0.17 5.69 5.40 84.58 0.46 6.15 16 4 N -0.44 -20.40 2.53 -649.14 -1.64 -22.04 16 5 C -0.35 -18.09 9.19 84.08 0.77 -17.32 16 6 H 0.09 4.36 7.90 -2.91 -0.02 4.33 16 7 C 0.02 1.10 4.38 84.94 0.37 1.47 16 8 N -0.86 -48.69 11.50 21.67 0.25 -48.44 16 9 Si 0.97 42.82 29.60 68.60 2.03 44.85 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.51 24.26 6.61 86.67 0.57 24.83 16 14 O -0.58 -32.51 14.30 -4.14 -0.06 -32.57 16 15 C -0.12 -4.56 5.72 -19.11 -0.11 -4.67 16 16 C -0.09 -2.45 7.72 23.78 0.18 -2.26 16 17 C -0.07 -1.68 10.09 22.38 0.23 -1.45 16 18 C 0.20 6.22 7.90 134.08 1.06 7.28 16 19 N -0.30 -9.77 12.28 -55.01 -0.68 -10.45 16 20 N -0.26 -8.94 12.20 -173.28 -2.11 -11.05 16 21 C 0.32 9.92 9.39 179.60 1.69 11.60 16 22 O -0.43 -10.78 13.65 -89.94 -1.23 -12.00 16 23 N -0.40 -12.96 2.95 -465.88 -1.38 -14.34 16 24 C 0.11 3.82 10.53 83.66 0.88 4.70 16 25 H 0.25 3.60 7.80 -4.42 -0.03 3.57 16 26 H 0.09 3.14 8.11 -2.39 -0.02 3.12 16 27 H 0.13 3.83 3.72 -7.60 -0.03 3.80 16 28 H 0.26 14.49 8.32 -92.71 -0.77 13.71 16 29 H 0.20 4.83 3.16 -2.91 -0.01 4.82 16 30 H 0.21 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.43 5.77 9.06 -74.06 -0.67 5.10 16 32 H 0.17 6.28 7.82 -2.91 -0.02 6.26 16 Total: -1.00 -74.36 292.15 3.60 -70.76 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.52 Total: 14.26 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 7.90 Total: 21.02 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -5.56 Total: -106.32 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -1.29 Total: -44.57 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -74.36 3.60 -70.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322588351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.887 kcal (2) G-P(sol) polarization free energy of solvation -74.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds