Wall clock time and date at job start Tue Mar 31 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86800 * 120.00399 * 2 1 4 4 H 1.48497 * 109.47040 * 239.99868 * 3 2 1 5 5 H 1.48499 * 109.46810 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47308 * 119.99819 * 3 2 1 7 7 C 1.40037 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00178 * 192.28202 * 7 2 1 9 9 C 1.41543 * 119.99625 * 12.28103 * 7 2 1 10 10 C 1.41183 * 120.99315 * 201.60034 * 9 7 2 11 11 C 1.37579 * 119.02017 * 180.02562 * 10 9 7 12 12 N 1.32081 * 121.11360 * 0.02562 * 11 10 9 13 13 C 1.32482 * 122.23027 * 0.02562 * 12 11 10 14 14 N 1.39378 * 119.58394 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99950 * 6.18203 * 14 13 12 16 16 O 1.21543 * 119.99923 * 354.23310 * 15 14 13 17 17 C 1.47894 * 119.99594 * 174.51587 * 15 14 13 18 18 C 1.40002 * 120.11444 * 179.72141 * 17 15 14 19 19 C 1.38413 * 117.96692 * 179.73705 * 18 17 15 20 20 C 1.39353 * 118.03590 * 0.52449 * 19 18 17 21 21 O 1.35513 * 120.02520 * 179.75191 * 20 19 18 22 22 N 1.32673 * 119.94588 * 359.73087 * 20 19 18 23 23 N 1.28356 * 122.20183 * 359.97438 * 22 20 19 24 24 C 1.38624 * 120.83403 * 0.25078 * 13 12 11 25 25 H 0.97001 * 119.99832 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.48896 * 0.02562 * 10 9 7 27 27 H 1.08006 * 119.44697 * 180.02562 * 11 10 9 28 28 H 0.97007 * 119.99403 * 186.17726 * 14 13 12 29 29 H 1.07998 * 121.01589 * 359.97438 * 18 17 15 30 30 H 1.08001 * 120.98173 * 180.27835 * 19 18 17 31 31 H 0.96697 * 113.99888 * 269.98045 * 21 20 19 32 32 H 1.07995 * 120.60547 * 179.74531 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6962 -1.2125 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6963 1.2124 7 6 2.0075 -1.2128 0.0005 8 1 3.0690 -1.2235 0.1995 9 6 1.3240 -2.4246 -0.2597 10 6 1.8541 -3.6633 0.1620 11 6 1.1559 -4.8164 -0.1130 12 7 0.0058 -4.7797 -0.7614 13 6 -0.5339 -3.6442 -1.1792 14 7 -1.7503 -3.6696 -1.8591 15 6 -2.4311 -4.8265 -1.9792 16 8 -1.9371 -5.8658 -1.5877 17 6 -3.7766 -4.8324 -2.5931 18 6 -4.4836 -6.0336 -2.7244 19 6 -5.7413 -5.9869 -3.3003 20 6 -6.2221 -4.7495 -3.7241 21 8 -7.4463 -4.6581 -4.2980 22 7 -5.4806 -3.6610 -3.5649 23 7 -4.3162 -3.6994 -3.0261 24 6 0.0988 -2.4316 -0.9536 25 1 -0.4850 0.8401 -0.0004 26 1 2.7939 -3.7051 0.6925 27 1 1.5549 -5.7678 0.2067 28 1 -2.1069 -2.8545 -2.2457 29 1 -4.0620 -6.9676 -2.3832 30 1 -6.3310 -6.8836 -3.4214 31 1 -7.4389 -4.7626 -5.2593 32 1 -0.3424 -1.5085 -1.2993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323958183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:38 Heat of formation + Delta-G solvation = 30.214847 kcal Electronic energy + Delta-G solvation = -20908.638918 eV Core-core repulsion = 17449.761352 eV Total energy + Delta-G solvation = -3458.877565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44643 -39.56583 -38.10036 -37.55514 -34.50661 -33.87768 -33.36640 -31.81405 -30.53369 -28.62160 -26.04924 -25.49116 -24.68189 -22.19985 -21.87209 -20.19435 -19.46358 -18.25002 -17.93355 -17.44465 -16.43367 -15.76286 -15.32592 -15.14796 -14.81330 -14.34063 -14.20493 -13.92968 -13.84195 -13.57625 -12.85578 -12.63358 -12.61251 -12.35206 -11.99336 -11.44949 -11.18958 -10.91770 -10.61307 -10.35279 -10.20589 -9.96718 -9.85586 -9.81441 -9.69510 -9.41742 -8.03550 -7.83390 -7.07575 -6.78466 -4.65070 0.17001 0.46449 2.37979 2.78757 2.85125 3.01544 3.03750 3.07674 3.25457 3.28534 3.70188 3.83858 3.88658 4.33257 4.44444 4.65817 4.66764 4.77993 5.32890 5.51411 5.65922 5.69080 5.94624 6.52310 6.61301 6.76921 6.91242 6.92354 7.11854 7.32819 7.42076 7.67904 7.90140 8.14080 8.27380 8.35490 8.61482 8.72980 8.75370 9.62559 10.05419 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.003915 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.136723 B = 7151.027387 C = 8355.683811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.139 3.861 10 C -0.283 4.283 11 C 0.119 3.881 12 N -0.558 5.558 13 C 0.330 3.670 14 N -0.632 5.632 15 C 0.560 3.440 16 O -0.467 6.467 17 C 0.026 3.974 18 C -0.049 4.049 19 C -0.141 4.141 20 C 0.265 3.735 21 O -0.473 6.473 22 N -0.255 5.255 23 N -0.183 5.183 24 C -0.238 4.238 25 H 0.284 0.716 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.419 0.581 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.408 0.592 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 -6.229 -7.786 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.307 4.307 11 C -0.036 4.036 12 N -0.277 5.277 13 C 0.106 3.894 14 N -0.278 5.278 15 C 0.341 3.659 16 O -0.336 6.336 17 C -0.122 4.122 18 C -0.078 4.078 19 C -0.171 4.171 20 C 0.081 3.919 21 O -0.279 6.279 22 N -0.109 5.109 23 N -0.032 5.032 24 C -0.263 4.263 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.142 0.858 28 H 0.256 0.744 29 H 0.186 0.814 30 H 0.180 0.820 31 H 0.267 0.733 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.639 -5.978 -7.334 14.238 hybrid contribution 0.350 0.420 -0.255 0.603 sum -10.289 -5.558 -7.589 13.941 Atomic orbital electron populations 1.69714 1.07636 1.29558 1.34383 1.25998 0.94868 1.01622 0.91943 0.86236 0.80009 0.79692 0.80068 1.18707 1.20162 1.18883 1.19593 0.96465 0.90196 1.41787 0.89977 1.17584 0.90413 0.92329 0.86613 1.21893 1.03642 0.93955 1.11177 1.21727 0.90277 0.96725 0.94845 1.67163 1.13961 1.27238 1.19336 1.18165 0.85743 0.91088 0.94428 1.43205 1.19896 1.11250 1.53444 1.17520 0.82937 0.85046 0.80443 1.90897 1.66648 1.30712 1.45337 1.23260 0.97933 0.91838 0.99141 1.22449 0.92621 1.00151 0.92588 1.22547 0.96003 0.99174 0.99364 1.21039 0.86217 0.90041 0.94618 1.84739 1.21769 1.94696 1.26716 1.73090 0.99854 1.26422 1.11489 1.73335 1.02618 1.23489 1.03794 1.21817 1.00554 0.95735 1.08197 0.90493 0.87917 0.85793 0.74370 0.81377 0.82035 0.73348 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.38 10.56 55.55 0.59 -18.79 16 2 C 0.07 1.79 5.30 -17.34 -0.09 1.70 16 3 Si 0.92 17.85 29.58 -169.99 -5.03 12.83 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.43 9.15 -37.65 -0.34 -11.78 16 8 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 9 C 0.14 3.63 5.64 -106.55 -0.60 3.03 16 10 C -0.28 -6.84 9.90 -38.70 -0.38 -7.23 16 11 C 0.12 2.80 11.15 -17.69 -0.20 2.60 16 12 N -0.56 -14.03 7.85 -12.54 -0.10 -14.13 16 13 C 0.33 8.04 7.41 -154.77 -1.15 6.90 16 14 N -0.63 -13.04 5.37 -12.34 -0.07 -13.11 16 15 C 0.56 10.80 7.76 -12.31 -0.10 10.70 16 16 O -0.47 -10.24 14.64 5.33 0.08 -10.17 16 17 C 0.03 0.39 6.83 -82.85 -0.57 -0.17 16 18 C -0.05 -0.57 9.72 -38.86 -0.38 -0.95 16 19 C -0.14 -1.28 10.14 -39.10 -0.40 -1.67 16 20 C 0.27 2.88 7.85 -16.77 -0.13 2.75 16 21 O -0.47 -3.90 13.56 -18.23 -0.25 -4.15 16 22 N -0.26 -3.64 11.54 30.54 0.35 -3.29 16 23 N -0.18 -2.86 10.74 33.31 0.36 -2.50 16 24 C -0.24 -6.05 8.65 -38.47 -0.33 -6.39 16 25 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 26 H 0.10 2.27 8.06 -52.48 -0.42 1.84 16 27 H 0.12 2.53 8.06 -52.48 -0.42 2.10 16 28 H 0.42 7.76 8.06 -40.82 -0.33 7.43 16 29 H 0.17 1.71 7.71 -52.49 -0.40 1.30 16 30 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.41 1.11 9.06 45.56 0.41 1.52 16 32 H 0.14 3.57 5.87 -52.49 -0.31 3.26 16 LS Contribution 295.71 15.07 4.46 4.46 Total: -1.00 -32.40 295.71 -5.72 -38.12 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -1.44 Total: 11.23 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -4.66 Total: -0.51 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 1.13 Total: -51.81 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.17 Total: -14.31 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.40 -5.72 -38.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323958183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.330 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds